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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8897#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 913 fasta sequence
[CCTCGNAGGCCAANAATTCGGCACGAGGTGAAAACGGTAATTTGATAATCCCCCCGACCCAACGACCCGATGGTACATGGAGAAAAGCCGTTCGTGTTAAAGAGGGATATATTCCTCAAGAAGAAGTTCCACTTTACCGATCTTCTGGTGTACAAATCCTTGAGAAGAAATCGCAGTTCGTCATCCCAGGTTTGACAAAAGAGGATGCGAACAAGCTAAAGCTAGAACGACAAAAACAGTCACAATCTGATACATCAGCATCAAACCCAGTCCTTAAAAAGAAAAAGTCTAATAAATCGAAATGCAAACAAACTGATGTCCAATCTTCAGGAACATCAAAGCAAACAGAACTGGATTCACCAAAGCTTACAAAACCCAGTACAACTTCATCTGATTACTCTGACAAGGTGAACATTGAAATTCCAAGTGATGCAACCGTGACTACCACTGAAAATATTGATCGACAGCTTAGACGTGAACATAAACGATTACTCCAAATAGAAGAGATAGAGAAAAAGAAACAAGCTGGAGAGAATTTAAACAAAGACCAATTGATAAAGTTAGGCCACAAACAAGCTGTTGAACAGCTCATTGAACAGTTGACGTTACTTAAAACTAACTGACGTTTTCTTGCCCTTTTTCAACAGCAGAAATCGATTTCGTTTTTTTACTTTNTCTGTTTACCCCNTNCCGCGTTGTTTCAAGTGTTTTTAAATCG-AAACCACAGAACT-AACTAG-AAAGATT-AG-ATACACTGATGAA-TTATTGAATATTATCACTACCATAGCATATGTTGTAGTTATATACTAATCAACAACGATGTGTATACGCATTGTGCTGGCATATCTGCTTTTTTCTGACGTTCTAACTCATGTATGGGAAAATGACTTGAACTTTACATTGTGTTACGGGATAT]
[+] EMBL CD080089 [CCTCGNAGGCCAANAATTCGGCACGAGGTGAAAACGGTAATTTGATAATCCCCCCGACCCAACGACCCGATGGTACATGGAGAAAAGCCGTTCGTGTTAAAGAGGGATATATTCCTCAAGAAGAAGTTCCACTTTACCGATCTTCTGGTGTACAAATCCTTGAGAAGAAATCGCAGTTCGTCATCCCAGGTTTGACAAAAGAGGATGCGAACAAGCTAAAGCTAGAACGACAAAAACAGTCACAATCTGATACATCAGCATCAAACCCAGTCCTTAAAAAGAAAAAGTCTAATAAATCGAAATGCAAACAAACTGATGTCCAATCTTCAGGAACATCAAAGCAAACAGAACTGGATTCACCAAAGCTTACAAAACCCAGTACAACTTCATCTGATTACTCTGACAAGGTGAACATTGAAATTCCAAGTGATGCAACCGTGACTACCACTGAAAATATTGATCGACAGCTTAGACGTGAACATAAACGATTACTCCAAATAGAAGAGATAGAGAAAAAGAAACAAGCTGGAGAGAATTTAAACAAAGACCAATTGATAAAGTTAGGCCACAAACAAGCTGTTGAACAGCTCATTGAACAGTTGACGTTACTTAAAACTAACTGACGTTTTCTTGCCCTTTTTCAACAGCAGAAATCGATTTCGTTTTTTTACTTTNTCTGTTTACCCCNTNCCGCGTTGTTTCAAGTGTTTTTAAATCG AAACCACAGAACT AACTAG AAAGATT AG ATACACTGATGAA TTATTGAATATTATCACTACCATAGCATATGTTGTAGTTATATACTAATCAACAACGATGTGTATACGCATTGTGCTGGCATATCTGCTTTTTTCTGACGTTCTAACTCATGTATGGGAAAATGACTTGAACTTTACATTGTGTTACGGGATAT]
[+] EMBL CD080069 [ TGAAAACGGTAATTTGATAATCCCCCCGACCCAACGACCCGATGGTACATGGAGAAAAGCCGTTCGTGTTAAAGAGGGATATTTTCCTCAAGAAGAAGTTCCACTTTACCGATCTTCTGGTGTACAAATCCTTGAGAAGAAATCGCAGTTCGTCATCCCAGGTTTGACAAAAGAGGATGCGAACAAGCTAAAGCTAGAACGACAAAAACAGTCACAATCTGATACATCAGCATCAAACCCAGTCCTTAAAAAGAAAAAGTCTAATAAATCGAAATGCAAACAAACTGATGTCCAATCTTCAGGAACATCAAAGCAAACAGAACTGGATTCACCAAAGCTTACAAAACCCAGTACAACTTCATCTGATTACTCTGACAAGGTGAACATTGAAATTCCAAGTGATGCAACCGTGACTACCACTGAAAATATTGATCGACAGCTTAGACGTGAACATAAACGATTACTCCAAATAGAAGAGATAGAGAAAAgg ]
[+] EMBL CD162155 [ GAAGTTCCACTTTACCGATCTTCTGGTGTATAAATCCTTGAGAAGAAATCGCAGTTCGTCATCCCAGGTTTGACAAAAGAGGATGCGAACAAGCTAAAGCTAGAACGACAAAAACGGTCACAATCTGATACATCAGCATCAAACCCAGTCCTTAAAAAGAAAAAGTCTAATAAATCGAAATGCAAACAAACTGATGTCCAATCTTCAG ]
[+] EMBL CD083989 [ GGAACATCAAAGCAAACAGAACTGGATTCACCAAAGCTTACAAAACCCAGTACAACTTCATCTGATTACTCTGACAAGGTGAACATTGAAATTCCAAGTGATGCAACCGTGACTACCACTGAAAATATTGATCGACAGCTTAGACGTGAACATAAACGATTACTCCAAATAGAAGAGATAGAGAAAAAGAAACAAGCTGGAGAGAATTTAAACAAAGACCAATTGATAAAGTTAGGCCACAAACAAGCTGTTGAACAGCTCATTGAACAGTTGACGTTACTTAAAACTAACTGACGTTTTCTTGCCCTTTTTCAACAGCAG AATCGATTTCGTTTTTTTACTTTTTCTGTTTACCCCGCTCCGCGTTGTTTCAAGTGTTTTTAAATCGAAAACAACAGAACTAAACTAGAAAAGATTAAGAATACACTGATGAATTTATTGA ]
consensusID : consensus_8897#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 669 fasta sequence
[TTTCGGCGAAACCANAACAAGCTGTTGAACAGCTCATTGAACAGTTGACGTTACTTAAAACTAACTGACGTTTTCTTGCCCTTTTTCAACAGCAGAATCGATTTCGTTTTTTAACTTTTTCTGTTTACCCGCTCCGCTTGTTTCAAGTGTTTTTAAATCGAAAACAACAGAACTAAACTAGAAAAGATTAAGAATACACTGATGAATTTATTGAATAATTAATCAACTACCAATAAGCATATGTTGTTAGTTAATAATACTAAATCACACAAACGAATGTGGTATAACGGCATTTGTGCATGGTCAATATACATGCTTTTTTTCCATGAGCGTTTTCTAAACTTCAATTGTTATGTGG-AAAATATGGTACTTTGAATATCTTTTACAATATGTTTGTATAATCGATGTAATATAT-AATTATAATCATCATACTTATTTTGTTATAT-AAAAAGTACTATTGTTTGTCGAGAC-AAATTTGAC-AGTGTGTACCTATTTAACTC-AAGCTTAGTTATGATTACAAAACATTTTCAAGAACGAATCCTGTTACAGGATGTAATTATTTTGTGCAAATTTAATTGTTTTTTGGAGAAAAACACACTTCGATTAATAGTTATAGTATTTGGCAACGGTAGGAATATTTAATACACTCTGGCAGGATTAGCATATAGG]
[+] EMBL AI820492 [TTTCGGCGAAACCANAACAAGCTGTTGAACAGCTCATTGAACAGTTGACGTTACTTAAAACTAACTGACGTTTTCTTGCCCTTTTTCAACAGCAGAATCGATTTCGTTTTTTAACTTTTTCTGTTTACCCGCTCCGCTTGTTTCAAGTGTTTTTAAATCGAAAACAACAGAACTAAACTAGAAAAGATTAAGAATACACTGATGAATTTATTGAATAATTAATCAACTACCAATAAGCATATGTTGTTAGTTAATAATACTAAATCACACAAACGAATGTGGTATAACGGCATTTGTGCATGGTCAATATACATGCTTTTTTTCCATGAGCGTTTTCTAAACTTCAATTGTTATGTGG AAAATATGGTACTTTGAATATCTTTTACAATATGTTTGTATAATCGATGTAATATAT AATTATAATCATCATACTTATTTTGTTATAT AAAAAGTACTATTGTTTGTCGAGAC AAATTTGAC AGTGTGTACCTATTTAACTC AAGCTTAGTTATGATTACAAAACATTTTCAAGAACGAATCCTGTTACAGGATGTAATTATTTTGTGCAAATTTAATTGTTTTTTGGAGAAAAACACACTTCGATTAATAGTTATAGTATTTGGCAACGGTAGGAATATTTAATACACTCTGGCAGGATTAGCATATAGG]
[+] EMBL CD191723 [ GTTTTTAAATCGAAAACAACAGAACTAAACTAGAAAAGATTAAGAATACACTGATGAATTTATTGAATAATTAATCAACTACCAATAAGCATATGTTGTTAGTTAATAATACTAAATCAAACAAACGAATGTGGTATAACGGCATTTGTGCATGGTCAATATACATGCTTTTTTTCCATGAGCGTTTTCTAAACTTCAATTGTTATGTGGAAAAATATGGTACTTTGAATATCTTTTACAATATGTTTGTATAATCGATGTAATATATAAATTATAATCATCATACTTATTTTGTTATATAAAAAAGTACTATTGTTTGTCGAGACAAAATTTGACAAGTGTGTACCTGTTTAACTCAAAGCTTAGTTATGATTACAAAAa ]
consensusID : consensus_8897#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 231 fasta sequence
[TCCGGGTACTCATTTATTACTATTAGAAAAAAGTTCATTTTCCTCTTAAAAGTATCTGCTACGGCAGACTATACACTTGGAATTCCTCCTTTCAAAACGGCTTCAAAAATGAATGGATTTGTAAGACAAGGCGTTGTTCGTGATGAAAACGGGAATTTGATAATCCCACCGACCCAACGACCCGATGGTACATGGAGAAAAGCCGTTCGTGTTAAAGAGGGGTATATTCCT]
[+] EMBL CD119369 [TCCGGGTACTCATTTATTACTATTAGAAAAAAGTTCATTTTCCTCTTAAAAGTATCTGCTACGGCAGACTATACACTTGGAATTCCTCCTTTCAAAACGGCTTCAAAAATGAATGGATTTGTAAGACAAGGCGTTGTTCGTGATGAAAACGGGAATTTGATAATCCCACCGACCCAACGACCCGATGGTACATGGAGAAAAGCCGTTCGTGTTAAAGAGGGGTATATTCCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8897#0 CCTCGNAGGCCAANAATTCGGCACGAGGTGAAAACGGTAATTTGATAATCCCCCCGACCC 60
consensus_8897#1 --------------------------------------------------------TTTC 4
consensus_8897#2 ------------------------------------------------------------
consensus_8897#0 AACGACCCGATGGTACATGGAGAAAAGCCGTTCGTGTTAAAGAGGGATATATTCCTCAAG 120
consensus_8897#1 GGCGAAACCANA--ACAAGCTGTTGAACAGCTCAT--TGAACAGTTG-ACGTTACTTAAA 59
consensus_8897#2 ------------------------------------------------------------
consensus_8897#0 AAGAAGTTCCACTTTACCGATCTTCTGGTGTACAAATCCTTGAGAAGAAATCGCAGTTCG 180
consensus_8897#1 ACTAACTGACGTTTTCTTGCCCTTTT------TCAACAGCAGAATCGATTTCGTTTTTTA 113
consensus_8897#2 -----------TCCGGGTACTCATTT-----ATTACTATTAGAAAAAAGTTCATTTTCCT 44
* * * * ** * ** *
consensus_8897#0 TCATCCCAGGTTTGACAAAAGAGGATGCGAACAAGCTAAAGCTAGAACGACAAAAAC--- 237
consensus_8897#1 ACTTTTTCTGTTTACCCGCTCCGCTTGTTT-CAAG-TGTTTTTAAATCGAAAACAAC--- 168
consensus_8897#2 CTTAAAAGTATCTGCTACGGCAGACTATACACTTGGAATTCCTCCTTTCAAAACGGCTTC 104
* * * * * * * * ** *
consensus_8897#0 AGTCACAATCTGATACATCAGCATCAAACCCAGTCC-TTAAAAAGAAAAAGTCTAATAAA 296
consensus_8897#1 AGAACTAAACTAGAA----AAGATTAAGAATA-CAC-TGATGAATTTATTGAATAATTAA 222
consensus_8897#2 AAAAATGAA-TGGATTTGTAAGACAAGGCGTTGTTCGTGATGAAAACGGGAATTTGATAA 163
* * * * * * * * * ** * **
consensus_8897#0 TCGAAATG--CAAACAAACTGATGTCCAATCTTCAGGAACATCAAAGCAAACAGAACTGG 354
consensus_8897#1 TC-AACTA--CCAATAAGCATATGTT-GTTAGTTAATAATACTAAATCACACAAA--CGA 276
consensus_8897#2 TCCCACCGACCCAACGACCCGATGGTACATGGAGAAAAGCCGTTCGTGTTAAAGAGGGGT 223
** * * ** * * *** * * * * * * *
consensus_8897#0 ATTCACCAAAGCTTACAAAACCCAGTACAACTTCA-TCTGATTACTCTGACAAGGTGAAC 413
consensus_8897#1 ATGTGGTATA----ACGGCATTT-GTGCATGGTCAATATACATGCTTTTTTTCCATGAGC 331
consensus_8897#2 ATATTCCT---------------------------------------------------- 231
**
consensus_8897#0 ATTGAAATTCCAAGTGATGCAACCGTGACTACCACTGAAAATATTGATCGACAGCTTAGA 473
consensus_8897#1 GTT----TTCTAAAC--TTCAATTGTTAT----GTGGAAAATAT-GGTACTTTGAATATC 380
consensus_8897#2 ------------------------------------------------------------
consensus_8897#0 CGTGAACATAAACGATTACTCCAAATAGAAGAGATAGAGAAAAAGAAACAAGCTGGAGAG 533
consensus_8897#1 TTTTACAATATGTTTGTATAATCGATGTAATATATA-ATTATAATCATCATACTTATTTT 439
consensus_8897#2 ------------------------------------------------------------
consensus_8897#0 AATTTAAACAAAGACCAATTGATAAAGTTAGGCCACAAACAAGCTGTTGAACAGCTCATT 593
consensus_8897#1 GTTATATAAAAAGTACTATTGTT--TGTCGAG--ACAAATTTGACAGTGTGTA-CCTATT 494
consensus_8897#2 ------------------------------------------------------------
consensus_8897#0 GAACAGTTGACGTTACTTAAAACTAACTGACGTTTTCTTGCCCTTTTTCAACAGCAGAAA 653
consensus_8897#1 TAAC--TCAAGCTTAGTTATGATTACAAAACATTTTCAAGAACGAATCCTGTTACAGGAT 552
consensus_8897#2 ------------------------------------------------------------
consensus_8897#0 TCGATTTCGTTTTTTTACTTTNTCTGTTTACCCCNTNCCGCGTTGTTTCAAGTGTTTTTA 713
consensus_8897#1 GTAATTATTTTGTGCAAATTTAATTGTTTTTTGGAGAAAAACACACTTCGATTAAT---- 608
consensus_8897#2 ------------------------------------------------------------
consensus_8897#0 AATCGAAACCACAGAACTAACTAGAAAGATTAGATACACTGATGAATTATTGA-ATATTA 772
consensus_8897#1 AGTTATAGTATTTGGCAACGGTAGGAATATTTAATACACTCTGGCAGGATTAGCATATAG 668
consensus_8897#2 ------------------------------------------------------------
consensus_8897#0 TCACTACCATAGCATATGTTGTAGTTATATACTAATCAACAACGATGTGTATACGCATTG 832
consensus_8897#1 G----------------------------------------------------------- 669
consensus_8897#2 ------------------------------------------------------------
consensus_8897#0 TGCTGGCATATCTGCTTTTTTCTGACGTTCTAACTCATGTATGGGAAAATGACTTGAACT 892
consensus_8897#1 ------------------------------------------------------------
consensus_8897#2 ------------------------------------------------------------
consensus_8897#0 TTACATTGTGTTACGGGATAT 913
consensus_8897#1 ---------------------
consensus_8897#2 ---------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||