Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 8901 cluster # 8901       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8901#0 length = 1324 sequences # 6  
consensus_8901#1 length = 143 sequences # 1  

consensusID : consensus_8901#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1324
fasta sequence
                              [GAAGCAGAACGTGATGCTGGAATCAAGGAAGCAGAATGTGATCGTAGTCGTTTGGACGTTCGTTATTCAGCGGATACACATATTGCTAATTCAAGTCGTGAATTTCAGTTGAGGAAGGCTAGTTTTGATCAAGAGGTTAATACAGCTCGTGCAGAATCTGAATTGGCCTATAAATTACAGGCTGCTAAAGAGAGACAAAAAATTCGAACAGAAGAAGTGAATATTAATATTGTTGAACGTCGTAAACAAATTGAAATTGAAGAAAAAGGCATACTATGTACTGAAAAGAATATGGATGCTACCGTACGACGTCCAGCTGAAGCAGAAGCTTATAGACTACAACAAATAGCTGAGGGTTATAGATCACAGAAAATTCTTTTAGCTCAAGCTGAGGCCGATGGTATTCGTCTTAAAGGTATTGCTAAAGCTGAAGCTATGGAAGCTGTTGGACGGGCAGAAGCGGAGAGAATGCGTTTGAGGGCTGAAGCTTATAGTAAATACGGTGATGCTGCTATTCTAAATCTCATATTGGATACATTACCGCAAATAGCTGCTGAAGTTGCTGCTCCACTGAGCAAAACCAAAGAAATTGTTATAATGAACGGTTCTAATGGTGAACCAGCTACTTTACAAAGTCTCACTAATCTGGGCAAAGATTTTACTACATTAGTTGGGACTGTTCCACATGCTATTCGAGCTCTAACAAACGTTGATCTCAGTCAGACTATTTCCAAGATTCCAGGAGCTAAGGTTGTCCCACCACAAGGGATATGACAATGTGTAAAATGTACGAGTCAACCACTGAATATACTTGTTTCTAAAATCATTTTCATAAAAATGACCCATCCTGGTATATTCTNCTTTAGATACAGCGCATCTCGCCACGGACTTTTTTTCTTGCGAAGTGTTATATGTGATATACAAGATAAATTGACTTTACTGCTTTTCGTTCAATTTCGGCATTTCTACTTTGTTTTTCAACATTAATTTCATCTCTTTTTCCATGACTTATCAGGAACCTTATCTATAATAGTTCCTTTGATAAAACAGTTCTCTGTTTTGCTTTAGTTGCAATTAGTGTTGTATATCTATCAATTTTCTTATAGTAATTCGTATTTATTCTACATAGAGAAGTTGCGTACTTGTAAAACTAATTTTTGAATTGTATGTTTCTGTATTGATAATTTTGGTCTTGAAAACCTGCCGTTGCTTCATTTTGTTACTCTTTTTGTTCTTCTTACTTTGTGAATTCGGTTTAGAACCATTTAAATTGTATGATCTATAATTTTTAGAAAAATTCAGGAAATCAGTCTGCCAAAAAAAA]

[+] EMBL CD159150             [GAAGCAGAACGTGATGCTGGAATCAAGGAAGCAGAATGTGATCGTAGTCGTTTGGACGTTCGTTATTCAGCGGATACACATATTGCTAATTCAAGTCGTGAATTTCAGTTGAGGAAGGCTAGTTTTGATCAAGAGGTTAATACAGCTCGTGCAGAATCTGAATTGGCCTATAAATTACAGGCTGCTAAAGAGAGACAAAAAATTCGAACAGAAGAAGTGAATATTAATATTGTTGAACGTCGTAAACAAATTGAAATTGAAGAAAAAGGCATACTATGTACTGAAAAGAATATGGGTGCTACCGTACGACGTCCAGCTGAAGCAGAAGCTTATAGACTACAACAAATAGCTGAGGGTTATAGATCACAGAAAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD090572             [                                                                                                                                                       CAGAATCTGAATTGGCCTATAAATTACAGGCTGCTAAAGAGAGACAAAAAATTCGAACAGAAGAAGTGAATATTAATATTGTTGAACGTCGTAAACAAATTGAAATTGATTATTAAGGCATACTATGTACTGAAAAGAATATGGATGCTACCGTACGACGTCCAGCTGAAGCAGAAGCTTATAGACTACAACAAATAGCTGAGGGTTATAGATCACAGAAAATTCTTTTAGCTCAAGCTGAGGCCGATGGTATTCGTCTTAAAGGTGTTGCTAAAGCTGAAGCTATGGAAGCTGTTGGACGGACAGAAGCGGAGAGAATGCGTTTGAGGGCTGAAGCTTATAGTAAATACGGTGATGCTGCTATTCTAAATCTCATATTGGATACATTACCGCAAATAGCTGCTGAAGTTGCTGCTCCACTGAGCAAAACCAAAGAAATTGTTATAATGAACGGTTCTAATGGTGAACCAGCTACTTTACAAAGTCTCACTAATCTGGGCANAGATTNTACTACATTANTTGGGACTGTTCCACATGCTATTCGAGCTCT ACAAACGTTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD169595             [                                                                                                                                                                                                        AATTCGAACAGAAGAAGTGAATATTAATATTGTTGAACGTCGTAAACAAATTGAAATTGAAGAAAAAGGCATACTATGTACTGAAAGGAATATGGATGCTACCGTACGACGTCCAGCTGAAGCAGAAGCTTATAGACTACAACAAATAGCTGAGGGTTATAGATCACAGAAAATTCTTTTAGCTCAAGCTGAGGCCGATGGTATTCGTCTTAAAGGTATTGCTAACGCTGAAGCTATGGAAGCTGTTGGACGGGCAGAAGCGGAGAGAATGCGTTTGAGGGCTGAAGCTTATAGTAAATACGGTGATGCTGCTATTCTAAATCTCATATTGGATACATTACCGCAAATAGCTGCTGAAGTTGCTGCTCCACTGAGCAAAACCAAAGAAATTGTTATAATGAACGGTTCTAATGGTGAACCAGCTACTTTACAAAGTCTCACTAATCTGGGCAAAGATTTTACTACATTAGTTGGGACTGTTCCACATGCTATTCGAGCTCTAACAAACGTTGATCTCAGTCAGACTATTTCCAAGATTCCAGGAGCTAAGGTTGTCCCACCACAAGGGATATGANCATGTGTAAAATGTACGAGTCAACCACTGAATATACTTGTTTCTAAAATCATTTTCATAAAAATGACCCATCCTGGTATATTCTNCTTTAGATAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD169295             [                                                                                                                                                                                                        AATTCGAACAGAAGAAGTGAATATTAATATTGTTGAACGTCGTAAACAAATTGAAATTGAAGAAAAAGGCATACTATGTACTGAAAAGAATATGGATGCTACCGTACGACGTCCAGCTGAAGCAGAAGCTTATAGACTACAACAAATAGCTGAGGGTTATAGATCACAGAAAATTCTTTTAGCTCAAGCTGAGGCCGATGGTATTCGTCTTAAAGGTATTGCTAAAGCTGAAGCTATGGAAGCTGTTGGACGGGCAGAAGCGGAGAGAATGCGTTTGAGGGCTGAAGCTTATAGTAAATACGGTGATGCTGCTATTCTAAATCTCATATTGGATACATTACCGCAAATAGCTGCTGAAGTTGCTGCTCCACTGAGCAAAACCAAAGAAATTGTTATAATGAACGGCTCTAATGGTGAACCAGCTACTTTACAAAGTCTCACTAATCTGGGCAAAGATTTTACTACATTAGTTGGGACTGTTCCACATGCTATTCGAGCTCTAACAAACGTTGATCTCAGTCAGACTATTTCCAAGATTCCAGGAGCTAAGGTTGTCCCACCACAAGGGATATGACAATGTGTAAAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CD168982             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TGAGCAAAACCAAAGAAATTGTTATAATGAACGGTTCTAATGGTGAACCAGCTACTTTACAAAGTCTCACTAATCTGGGCAAAGATTTTACTACATTAGTTGGGACTGTTCCACATGCTATTCGAGCTCTAACAAACGTTGATCTCAGTCAGACTATTTCCAAGATTCCAGGAGCTAAGGTTGTCCCACCACAAGGGATATGACAATGTGTAAAATGTACGAGTCAACCACTGAATATACTTGTTTCTAAAATCATTTTCATAAAAATGACCCATCCTGGTATATTCTCCTTTAGATACAGCGCATCTCGCCACGGACTTTTTTTCTTGCGAAGTGTTATATGTGATATACAAGATAAATTGACTTTACTGCTTTTCGTTCAATTTCGGCATTTCTACTTTGTTTTTCAACATTAATTTCATCTCTTTTTCCATGACTTATCAGGAACCTTATCTATAATAGTTCCTTTGATAAAACAGTTCTCTGTTTTGCTTTAGTTGCAATTAGTGTTGTATATCTATCAATTTTCTTATAGTAATTCGTATTTATTCTACATAGAGAAGTTGCGTACTTGTAAAACTAATTTTTGAATTGTATGTTTCTGTATTGATAATTTTGGTCTT                                                                                                                                  ]
[-] EMBL AI394997             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TTATCTATATTAGTTCCTTTGATAAACCGGTTCTCTGTTATGCTTTAGTTGCAATTAATGTTGTATATCTATCAATTTTCTTATAGTAATTCGTATTTATTCTACATAGAGAAGTTGCGTACTTGTAAAACTAATTTTTGAATTGTATGTTTCTGTATTGATAATTTTGGTCTTGAAAACCTGCCGTTGCTTCATTTTGTTACTCTTTTTGTTCTTCTTACTTTGTGAATTCGGTTTAGAACCATTTAAATTGTATGATCTATAATTTTTAGAAAAATTCAGGAAATCAGTCTGCCAAAAAAAA]


>consensus_8901#0 GAAGCAGAACGTGATGCTGGAATCAAGGAAGCAGAATGTGATCGTAGTCGTTTGGACGTT CGTTATTCAGCGGATACACATATTGCTAATTCAAGTCGTGAATTTCAGTTGAGGAAGGCT AGTTTTGATCAAGAGGTTAATACAGCTCGTGCAGAATCTGAATTGGCCTATAAATTACAG GCTGCTAAAGAGAGACAAAAAATTCGAACAGAAGAAGTGAATATTAATATTGTTGAACGT CGTAAACAAATTGAAATTGAAGAAAAAGGCATACTATGTACTGAAAAGAATATGGATGCT ACCGTACGACGTCCAGCTGAAGCAGAAGCTTATAGACTACAACAAATAGCTGAGGGTTAT AGATCACAGAAAATTCTTTTAGCTCAAGCTGAGGCCGATGGTATTCGTCTTAAAGGTATT GCTAAAGCTGAAGCTATGGAAGCTGTTGGACGGGCAGAAGCGGAGAGAATGCGTTTGAGG GCTGAAGCTTATAGTAAATACGGTGATGCTGCTATTCTAAATCTCATATTGGATACATTA CCGCAAATAGCTGCTGAAGTTGCTGCTCCACTGAGCAAAACCAAAGAAATTGTTATAATG AACGGTTCTAATGGTGAACCAGCTACTTTACAAAGTCTCACTAATCTGGGCAAAGATTTT ACTACATTAGTTGGGACTGTTCCACATGCTATTCGAGCTCTAACAAACGTTGATCTCAGT CAGACTATTTCCAAGATTCCAGGAGCTAAGGTTGTCCCACCACAAGGGATATGACAATGT GTAAAATGTACGAGTCAACCACTGAATATACTTGTTTCTAAAATCATTTTCATAAAAATG ACCCATCCTGGTATATTCTNCTTTAGATACAGCGCATCTCGCCACGGACTTTTTTTCTTG CGAAGTGTTATATGTGATATACAAGATAAATTGACTTTACTGCTTTTCGTTCAATTTCGG CATTTCTACTTTGTTTTTCAACATTAATTTCATCTCTTTTTCCATGACTTATCAGGAACC TTATCTATAATAGTTCCTTTGATAAAACAGTTCTCTGTTTTGCTTTAGTTGCAATTAGTG TTGTATATCTATCAATTTTCTTATAGTAATTCGTATTTATTCTACATAGAGAAGTTGCGT ACTTGTAAAACTAATTTTTGAATTGTATGTTTCTGTATTGATAATTTTGGTCTTGAAAAC CTGCCGTTGCTTCATTTTGTTACTCTTTTTGTTCTTCTTACTTTGTGAATTCGGTTTAGA ACCATTTAAATTGTATGATCTATAATTTTTAGAAAAATTCAGGAAATCAGTCTGCCAAAA AAAA



consensusID : consensus_8901#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 143
fasta sequence
                              [ATCGCACGAGGCTTAAATTCCCTTGGACGTGCACAACAGCAAACGTCAAATAGAGATGCTGACATTGGAGTTGCTGAAGCAGAACGTGATGCTGGAATCAAGGAAGCAGAATGTGATCGTATATCGATTTGGACTGTTCTGTT]

[+] EMBL CD083611             [ATCGCACGAGGCTTAAATTCCCTTGGACGTGCACAACAGCAAACGTCAAATAGAGATGCTGACATTGGAGTTGCTGAAGCAGAACGTGATGCTGGAATCAAGGAAGCAGAATGTGATCGTATATCGATTTGGACTGTTCTGTT]


>consensus_8901#1 ATCGCACGAGGCTTAAATTCCCTTGGACGTGCACAACAGCAAACGTCAAATAGAGATGCT GACATTGGAGTTGCTGAAGCAGAACGTGATGCTGGAATCAAGGAAGCAGAATGTGATCGT ATATCGATTTGGACTGTTCTGTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8901#0      GAAGCAGAACGTGATGCTGGAATCAAGGAAGCAGAATGTGATCGTAGTCGTTTGGACGTT 60
consensus_8901#1      ------------------------------------------------------------
                                                                                  

consensus_8901#0      CGTTATTCAGCGGATACACATATTGCTAATTCAAGTCGTGAATTTCAGTTGAGGAAGGCT 120
consensus_8901#1      ------------------------------------------------------------
                                                                                  

consensus_8901#0      AGTTTTGATCAAGAGGTTAATACAGCTCGTGCAGAATCTGAATTGGCCTATAAATTACAG 180
consensus_8901#1      ------------------------------------------------------------
                                                                                  

consensus_8901#0      GCTGCTAAAGAGAGACAAAAAATTCGAACAGAAGAAGTGAATATTAATATTGTTGAACGT 240
consensus_8901#1      ------------------------------------------------------------
                                                                                  

consensus_8901#0      CGTAAACAAATTGAAATTGAAGAAAAAGGCATACTATGTACTGAAAAGAATATGGATGCT 300
consensus_8901#1      ------------------------------------------------------------
                                                                                  

consensus_8901#0      ACCGTACGACGTCCAGCTGAAGCAGAAGCTTATAGACTACAACAAATAGCTGAGGGTTAT 360
consensus_8901#1      ------------------------------------------------------------
                                                                                  

consensus_8901#0      AGATCACAGAAAATTCTTTTAGCTCAAGCTGAGGCCGATGGTATTCGTCTTAAAGGTATT 420
consensus_8901#1      --ATCGCACGAGGCTTAAATTCCCTTGGACGTGCACAACAGCAAACGTCAAATAGAGAT- 57
                        *** **  *   *    *  *    *  * *  * *  * *  ****  * **  ** 

consensus_8901#0      GCTAAAGCTGAAGCTATGGAAGCTGTTGGACGGGCAGAAGCGGAGAGAATGCGTTTGAGG 480
consensus_8901#1      GCTGACATTGGAGTTGCTGAAGCAGAACGTGATGCTGGAATCAAGGAAGC-------AGA 110
                      *** *   ** ** *   ***** *   *    ** * *    **  *         ** 

consensus_8901#0      GCTGAAGCTTATAGTAAATACGGTGATGCTGCTATTCTAAATCTCATATTGGATACATTA 540
consensus_8901#1      ATGTGATCGTATATCGATTTGGACTGTTCTGTT--------------------------- 143
                           * * ****   * *  *    * *** *                           

consensus_8901#0      CCGCAAATAGCTGCTGAAGTTGCTGCTCCACTGAGCAAAACCAAAGAAATTGTTATAATG 600
consensus_8901#1      ------------------------------------------------------------
                                                                                  

consensus_8901#0      AACGGTTCTAATGGTGAACCAGCTACTTTACAAAGTCTCACTAATCTGGGCAAAGATTTT 660
consensus_8901#1      ------------------------------------------------------------
                                                                                  

consensus_8901#0      ACTACATTAGTTGGGACTGTTCCACATGCTATTCGAGCTCTAACAAACGTTGATCTCAGT 720
consensus_8901#1      ------------------------------------------------------------
                                                                                  

consensus_8901#0      CAGACTATTTCCAAGATTCCAGGAGCTAAGGTTGTCCCACCACAAGGGATATGACAATGT 780
consensus_8901#1      ------------------------------------------------------------
                                                                                  

consensus_8901#0      GTAAAATGTACGAGTCAACCACTGAATATACTTGTTTCTAAAATCATTTTCATAAAAATG 840
consensus_8901#1      ------------------------------------------------------------
                                                                                  

consensus_8901#0      ACCCATCCTGGTATATTCTNCTTTAGATACAGCGCATCTCGCCACGGACTTTTTTTCTTG 900
consensus_8901#1      ------------------------------------------------------------
                                                                                  

consensus_8901#0      CGAAGTGTTATATGTGATATACAAGATAAATTGACTTTACTGCTTTTCGTTCAATTTCGG 960
consensus_8901#1      ------------------------------------------------------------
                                                                                  

consensus_8901#0      CATTTCTACTTTGTTTTTCAACATTAATTTCATCTCTTTTTCCATGACTTATCAGGAACC 1020
consensus_8901#1      ------------------------------------------------------------
                                                                                  

consensus_8901#0      TTATCTATAATAGTTCCTTTGATAAAACAGTTCTCTGTTTTGCTTTAGTTGCAATTAGTG 1080
consensus_8901#1      ------------------------------------------------------------
                                                                                  

consensus_8901#0      TTGTATATCTATCAATTTTCTTATAGTAATTCGTATTTATTCTACATAGAGAAGTTGCGT 1140
consensus_8901#1      ------------------------------------------------------------
                                                                                  

consensus_8901#0      ACTTGTAAAACTAATTTTTGAATTGTATGTTTCTGTATTGATAATTTTGGTCTTGAAAAC 1200
consensus_8901#1      ------------------------------------------------------------
                                                                                  

consensus_8901#0      CTGCCGTTGCTTCATTTTGTTACTCTTTTTGTTCTTCTTACTTTGTGAATTCGGTTTAGA 1260
consensus_8901#1      ------------------------------------------------------------
                                                                                  

consensus_8901#0      ACCATTTAAATTGTATGATCTATAATTTTTAGAAAAATTCAGGAAATCAGTCTGCCAAAA 1320
consensus_8901#1      ------------------------------------------------------------
                                                                                  

consensus_8901#0      AAAA 1324
consensus_8901#1      ----
                          




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)