These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8901#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1324 fasta sequence [GAAGCAGAACGTGATGCTGGAATCAAGGAAGCAGAATGTGATCGTAGTCGTTTGGACGTTCGTTATTCAGCGGATACACATATTGCTAATTCAAGTCGTGAATTTCAGTTGAGGAAGGCTAGTTTTGATCAAGAGGTTAATACAGCTCGTGCAGAATCTGAATTGGCCTATAAATTACAGGCTGCTAAAGAGAGACAAAAAATTCGAACAGAAGAAGTGAATATTAATATTGTTGAACGTCGTAAACAAATTGAAATTGAAGAAAAAGGCATACTATGTACTGAAAAGAATATGGATGCTACCGTACGACGTCCAGCTGAAGCAGAAGCTTATAGACTACAACAAATAGCTGAGGGTTATAGATCACAGAAAATTCTTTTAGCTCAAGCTGAGGCCGATGGTATTCGTCTTAAAGGTATTGCTAAAGCTGAAGCTATGGAAGCTGTTGGACGGGCAGAAGCGGAGAGAATGCGTTTGAGGGCTGAAGCTTATAGTAAATACGGTGATGCTGCTATTCTAAATCTCATATTGGATACATTACCGCAAATAGCTGCTGAAGTTGCTGCTCCACTGAGCAAAACCAAAGAAATTGTTATAATGAACGGTTCTAATGGTGAACCAGCTACTTTACAAAGTCTCACTAATCTGGGCAAAGATTTTACTACATTAGTTGGGACTGTTCCACATGCTATTCGAGCTCTAACAAACGTTGATCTCAGTCAGACTATTTCCAAGATTCCAGGAGCTAAGGTTGTCCCACCACAAGGGATATGACAATGTGTAAAATGTACGAGTCAACCACTGAATATACTTGTTTCTAAAATCATTTTCATAAAAATGACCCATCCTGGTATATTCTNCTTTAGATACAGCGCATCTCGCCACGGACTTTTTTTCTTGCGAAGTGTTATATGTGATATACAAGATAAATTGACTTTACTGCTTTTCGTTCAATTTCGGCATTTCTACTTTGTTTTTCAACATTAATTTCATCTCTTTTTCCATGACTTATCAGGAACCTTATCTATAATAGTTCCTTTGATAAAACAGTTCTCTGTTTTGCTTTAGTTGCAATTAGTGTTGTATATCTATCAATTTTCTTATAGTAATTCGTATTTATTCTACATAGAGAAGTTGCGTACTTGTAAAACTAATTTTTGAATTGTATGTTTCTGTATTGATAATTTTGGTCTTGAAAACCTGCCGTTGCTTCATTTTGTTACTCTTTTTGTTCTTCTTACTTTGTGAATTCGGTTTAGAACCATTTAAATTGTATGATCTATAATTTTTAGAAAAATTCAGGAAATCAGTCTGCCAAAAAAAA] [+] EMBL CD159150 [GAAGCAGAACGTGATGCTGGAATCAAGGAAGCAGAATGTGATCGTAGTCGTTTGGACGTTCGTTATTCAGCGGATACACATATTGCTAATTCAAGTCGTGAATTTCAGTTGAGGAAGGCTAGTTTTGATCAAGAGGTTAATACAGCTCGTGCAGAATCTGAATTGGCCTATAAATTACAGGCTGCTAAAGAGAGACAAAAAATTCGAACAGAAGAAGTGAATATTAATATTGTTGAACGTCGTAAACAAATTGAAATTGAAGAAAAAGGCATACTATGTACTGAAAAGAATATGGGTGCTACCGTACGACGTCCAGCTGAAGCAGAAGCTTATAGACTACAACAAATAGCTGAGGGTTATAGATCACAGAAAAT ] [+] EMBL CD090572 [ CAGAATCTGAATTGGCCTATAAATTACAGGCTGCTAAAGAGAGACAAAAAATTCGAACAGAAGAAGTGAATATTAATATTGTTGAACGTCGTAAACAAATTGAAATTGATTATTAAGGCATACTATGTACTGAAAAGAATATGGATGCTACCGTACGACGTCCAGCTGAAGCAGAAGCTTATAGACTACAACAAATAGCTGAGGGTTATAGATCACAGAAAATTCTTTTAGCTCAAGCTGAGGCCGATGGTATTCGTCTTAAAGGTGTTGCTAAAGCTGAAGCTATGGAAGCTGTTGGACGGACAGAAGCGGAGAGAATGCGTTTGAGGGCTGAAGCTTATAGTAAATACGGTGATGCTGCTATTCTAAATCTCATATTGGATACATTACCGCAAATAGCTGCTGAAGTTGCTGCTCCACTGAGCAAAACCAAAGAAATTGTTATAATGAACGGTTCTAATGGTGAACCAGCTACTTTACAAAGTCTCACTAATCTGGGCANAGATTNTACTACATTANTTGGGACTGTTCCACATGCTATTCGAGCTCT ACAAACGTTG ] [+] EMBL CD169595 [ AATTCGAACAGAAGAAGTGAATATTAATATTGTTGAACGTCGTAAACAAATTGAAATTGAAGAAAAAGGCATACTATGTACTGAAAGGAATATGGATGCTACCGTACGACGTCCAGCTGAAGCAGAAGCTTATAGACTACAACAAATAGCTGAGGGTTATAGATCACAGAAAATTCTTTTAGCTCAAGCTGAGGCCGATGGTATTCGTCTTAAAGGTATTGCTAACGCTGAAGCTATGGAAGCTGTTGGACGGGCAGAAGCGGAGAGAATGCGTTTGAGGGCTGAAGCTTATAGTAAATACGGTGATGCTGCTATTCTAAATCTCATATTGGATACATTACCGCAAATAGCTGCTGAAGTTGCTGCTCCACTGAGCAAAACCAAAGAAATTGTTATAATGAACGGTTCTAATGGTGAACCAGCTACTTTACAAAGTCTCACTAATCTGGGCAAAGATTTTACTACATTAGTTGGGACTGTTCCACATGCTATTCGAGCTCTAACAAACGTTGATCTCAGTCAGACTATTTCCAAGATTCCAGGAGCTAAGGTTGTCCCACCACAAGGGATATGANCATGTGTAAAATGTACGAGTCAACCACTGAATATACTTGTTTCTAAAATCATTTTCATAAAAATGACCCATCCTGGTATATTCTNCTTTAGATAC ] [+] EMBL CD169295 [ AATTCGAACAGAAGAAGTGAATATTAATATTGTTGAACGTCGTAAACAAATTGAAATTGAAGAAAAAGGCATACTATGTACTGAAAAGAATATGGATGCTACCGTACGACGTCCAGCTGAAGCAGAAGCTTATAGACTACAACAAATAGCTGAGGGTTATAGATCACAGAAAATTCTTTTAGCTCAAGCTGAGGCCGATGGTATTCGTCTTAAAGGTATTGCTAAAGCTGAAGCTATGGAAGCTGTTGGACGGGCAGAAGCGGAGAGAATGCGTTTGAGGGCTGAAGCTTATAGTAAATACGGTGATGCTGCTATTCTAAATCTCATATTGGATACATTACCGCAAATAGCTGCTGAAGTTGCTGCTCCACTGAGCAAAACCAAAGAAATTGTTATAATGAACGGCTCTAATGGTGAACCAGCTACTTTACAAAGTCTCACTAATCTGGGCAAAGATTTTACTACATTAGTTGGGACTGTTCCACATGCTATTCGAGCTCTAACAAACGTTGATCTCAGTCAGACTATTTCCAAGATTCCAGGAGCTAAGGTTGTCCCACCACAAGGGATATGACAATGTGTAAAAT ] [-] EMBL CD168982 [ TGAGCAAAACCAAAGAAATTGTTATAATGAACGGTTCTAATGGTGAACCAGCTACTTTACAAAGTCTCACTAATCTGGGCAAAGATTTTACTACATTAGTTGGGACTGTTCCACATGCTATTCGAGCTCTAACAAACGTTGATCTCAGTCAGACTATTTCCAAGATTCCAGGAGCTAAGGTTGTCCCACCACAAGGGATATGACAATGTGTAAAATGTACGAGTCAACCACTGAATATACTTGTTTCTAAAATCATTTTCATAAAAATGACCCATCCTGGTATATTCTCCTTTAGATACAGCGCATCTCGCCACGGACTTTTTTTCTTGCGAAGTGTTATATGTGATATACAAGATAAATTGACTTTACTGCTTTTCGTTCAATTTCGGCATTTCTACTTTGTTTTTCAACATTAATTTCATCTCTTTTTCCATGACTTATCAGGAACCTTATCTATAATAGTTCCTTTGATAAAACAGTTCTCTGTTTTGCTTTAGTTGCAATTAGTGTTGTATATCTATCAATTTTCTTATAGTAATTCGTATTTATTCTACATAGAGAAGTTGCGTACTTGTAAAACTAATTTTTGAATTGTATGTTTCTGTATTGATAATTTTGGTCTT ] [-] EMBL AI394997 [ TTATCTATATTAGTTCCTTTGATAAACCGGTTCTCTGTTATGCTTTAGTTGCAATTAATGTTGTATATCTATCAATTTTCTTATAGTAATTCGTATTTATTCTACATAGAGAAGTTGCGTACTTGTAAAACTAATTTTTGAATTGTATGTTTCTGTATTGATAATTTTGGTCTTGAAAACCTGCCGTTGCTTCATTTTGTTACTCTTTTTGTTCTTCTTACTTTGTGAATTCGGTTTAGAACCATTTAAATTGTATGATCTATAATTTTTAGAAAAATTCAGGAAATCAGTCTGCCAAAAAAAA] consensusID : consensus_8901#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 143 fasta sequence [ATCGCACGAGGCTTAAATTCCCTTGGACGTGCACAACAGCAAACGTCAAATAGAGATGCTGACATTGGAGTTGCTGAAGCAGAACGTGATGCTGGAATCAAGGAAGCAGAATGTGATCGTATATCGATTTGGACTGTTCTGTT] [+] EMBL CD083611 [ATCGCACGAGGCTTAAATTCCCTTGGACGTGCACAACAGCAAACGTCAAATAGAGATGCTGACATTGGAGTTGCTGAAGCAGAACGTGATGCTGGAATCAAGGAAGCAGAATGTGATCGTATATCGATTTGGACTGTTCTGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8901#0 GAAGCAGAACGTGATGCTGGAATCAAGGAAGCAGAATGTGATCGTAGTCGTTTGGACGTT 60 consensus_8901#1 ------------------------------------------------------------ consensus_8901#0 CGTTATTCAGCGGATACACATATTGCTAATTCAAGTCGTGAATTTCAGTTGAGGAAGGCT 120 consensus_8901#1 ------------------------------------------------------------ consensus_8901#0 AGTTTTGATCAAGAGGTTAATACAGCTCGTGCAGAATCTGAATTGGCCTATAAATTACAG 180 consensus_8901#1 ------------------------------------------------------------ consensus_8901#0 GCTGCTAAAGAGAGACAAAAAATTCGAACAGAAGAAGTGAATATTAATATTGTTGAACGT 240 consensus_8901#1 ------------------------------------------------------------ consensus_8901#0 CGTAAACAAATTGAAATTGAAGAAAAAGGCATACTATGTACTGAAAAGAATATGGATGCT 300 consensus_8901#1 ------------------------------------------------------------ consensus_8901#0 ACCGTACGACGTCCAGCTGAAGCAGAAGCTTATAGACTACAACAAATAGCTGAGGGTTAT 360 consensus_8901#1 ------------------------------------------------------------ consensus_8901#0 AGATCACAGAAAATTCTTTTAGCTCAAGCTGAGGCCGATGGTATTCGTCTTAAAGGTATT 420 consensus_8901#1 --ATCGCACGAGGCTTAAATTCCCTTGGACGTGCACAACAGCAAACGTCAAATAGAGAT- 57 *** ** * * * * * * * * * * * **** * ** ** consensus_8901#0 GCTAAAGCTGAAGCTATGGAAGCTGTTGGACGGGCAGAAGCGGAGAGAATGCGTTTGAGG 480 consensus_8901#1 GCTGACATTGGAGTTGCTGAAGCAGAACGTGATGCTGGAATCAAGGAAGC-------AGA 110 *** * ** ** * ***** * * ** * * ** * ** consensus_8901#0 GCTGAAGCTTATAGTAAATACGGTGATGCTGCTATTCTAAATCTCATATTGGATACATTA 540 consensus_8901#1 ATGTGATCGTATATCGATTTGGACTGTTCTGTT--------------------------- 143 * * **** * * * * *** * consensus_8901#0 CCGCAAATAGCTGCTGAAGTTGCTGCTCCACTGAGCAAAACCAAAGAAATTGTTATAATG 600 consensus_8901#1 ------------------------------------------------------------ consensus_8901#0 AACGGTTCTAATGGTGAACCAGCTACTTTACAAAGTCTCACTAATCTGGGCAAAGATTTT 660 consensus_8901#1 ------------------------------------------------------------ consensus_8901#0 ACTACATTAGTTGGGACTGTTCCACATGCTATTCGAGCTCTAACAAACGTTGATCTCAGT 720 consensus_8901#1 ------------------------------------------------------------ consensus_8901#0 CAGACTATTTCCAAGATTCCAGGAGCTAAGGTTGTCCCACCACAAGGGATATGACAATGT 780 consensus_8901#1 ------------------------------------------------------------ consensus_8901#0 GTAAAATGTACGAGTCAACCACTGAATATACTTGTTTCTAAAATCATTTTCATAAAAATG 840 consensus_8901#1 ------------------------------------------------------------ consensus_8901#0 ACCCATCCTGGTATATTCTNCTTTAGATACAGCGCATCTCGCCACGGACTTTTTTTCTTG 900 consensus_8901#1 ------------------------------------------------------------ consensus_8901#0 CGAAGTGTTATATGTGATATACAAGATAAATTGACTTTACTGCTTTTCGTTCAATTTCGG 960 consensus_8901#1 ------------------------------------------------------------ consensus_8901#0 CATTTCTACTTTGTTTTTCAACATTAATTTCATCTCTTTTTCCATGACTTATCAGGAACC 1020 consensus_8901#1 ------------------------------------------------------------ consensus_8901#0 TTATCTATAATAGTTCCTTTGATAAAACAGTTCTCTGTTTTGCTTTAGTTGCAATTAGTG 1080 consensus_8901#1 ------------------------------------------------------------ consensus_8901#0 TTGTATATCTATCAATTTTCTTATAGTAATTCGTATTTATTCTACATAGAGAAGTTGCGT 1140 consensus_8901#1 ------------------------------------------------------------ consensus_8901#0 ACTTGTAAAACTAATTTTTGAATTGTATGTTTCTGTATTGATAATTTTGGTCTTGAAAAC 1200 consensus_8901#1 ------------------------------------------------------------ consensus_8901#0 CTGCCGTTGCTTCATTTTGTTACTCTTTTTGTTCTTCTTACTTTGTGAATTCGGTTTAGA 1260 consensus_8901#1 ------------------------------------------------------------ consensus_8901#0 ACCATTTAAATTGTATGATCTATAATTTTTAGAAAAATTCAGGAAATCAGTCTGCCAAAA 1320 consensus_8901#1 ------------------------------------------------------------ consensus_8901#0 AAAA 1324 consensus_8901#1 ---- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||