cluster # 8903

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Schistosoma mansoni
cluster # 8903 cluster # 8903 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8903#0 length = 754 sequences # 5

consensus_8903#1 length = 396 sequences # 1
consensus_8903#2 length = 351 sequences # 1

consensusID : consensus_8903#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 754
fasta sequence

                              [TTAATTGACTGAAATCACGTCGAGCTCCAATATTAACTGATTCAGATGTATTACGTTTTTGACGTTTTTTCTGTCCACCATGACCATATTTATTATTTTTATAAACACGTTTTTGATTAGTCTTTCGTCGATTTGCATAATCTTTTGCTGTATGGAAACTTTTCAATGATGATGATGATCCTTTCACATTGGATTTATCATTTTTCGGTTCATAATCTTTTTTAAATTCATTTAATATTTGTTCCAGTTTCTCTTCACGATTAATTCCAGTTTTCTTCCATGTACTCTTTACAGCTTCTGTTAGT-TTACGTTTTTCTTCTTTACGTGTTTGATTAACAGCCTGTTGAACTTGTTTACCAAATTTACGTCGTTCTCTTATTTGTCTGGCACGTTCACGTAATGCTAATTTTTGTTTAGTTTCAATTAGATATTTTTTAACCTTTGTCATGTGATCATCTGTTTTGACCATTTCTGCAAAGTAATCAGATGGACGTTTAGTCGGTACATCTAAAGCGTGTAATTGAGGTATAGCTTTAAGCACTGCAGACTGAGCTACACGATAAAAAAAGTTTTCACGTTTAAAATCATCATCTGGATCGATATGTTGTAAGTCGTCCAAATCTAAATCTTTTTGAGCTGGAGCTGCCGAACATGTGACATCTAATCGCTCAATCCATGGGAGACTTTTTCTGATACTACTGAGAGTATTTATAAGAGCTGACTTATTATATACATGTTTCTTTTCATGTGTAAT]

[+] EMBL CD122844             [TTAATTGACTGAAATCACGTCGAGCTCCAATATTAACTGATTCAGATGTATTACGTTTTTGACGTTTTTTCTGTCCACCATGACCATATTTATTATTTTTATAAACACGTTTTTGATTAGTCTTTCGTCGATTTGCATAATCTTTTGCTGTATGGAAACTTTTCAATGATGATGATGATCCTTTCACATTGGATTTATCATTTTTCGGTTCATAATCTTTTTTAAATTCATTTAATATTTGTTCCAGTTTCTCTTCACGATTAATTCCAGTTTTCTTCCATGTACTCTTTACAGCTTCTGTTAGT TTACGTTTTTCTTCTTTACGTGTTTGATTAACAGTCTGTTGAACTTGTTTACCAAATTTACGTCGTTCTCTTATTTGTCTGGCACGTTCACGTAATGCTAATTTTTGTTTAGTTTCAATTAGATATTTTTTAACCTTTGTCATGTGATCATCTGTTTTGACCATTTCTGCAAAGTAATCAGATGGACGTTTAGTCGGTACATCTAAAGCGTGTAATTGAGGTATAGCTTTAAGCACTGCAGACTGAGCTACACGATAAAAAAAGTTNTCACGTTTAAAATCATCATCTGGATCGATATGTTGTAAGTCGTCCAAAT                                                                                                                                     ]
[-] EMBL CD110779             [                                                                                                                                                                                                                                                                       ATTCCAGTTTTCTTCCATGTACTCTTTACAGCTTCTG TAGTNNTACGTTTTCTTTCTTTACGTGTTTGATTAACAGCCTGTTGAACTTGTTTACCAAATNTACGTCGTTCTCTTATTTGTCTGGCACGTTCACGTAATGCTAATTTTTGTTTAGTTTCAATTAGATATTTTTTAACCTTTGTCATGTGATCATCTGTTTTGACCATTTCTGCAAAGTAATCAGATGGACGTTTAGTCGGTACATCTAAAGCGTGTAATTGAGGTATAGCTTTAAGCACTGCAGACTGAGCTACACGATAAAAAAAGTTTTCACGTTTAAAAT                                                                                                                                                                         ]
[+] EMBL CD114024             [                                                                                                                                                                                                                                                                          CCAGTTTTCTTCCATGTACTCTTTACAGCTTCTGTTAGT TTACGTTTTTCTTCTTTACGTGTTTGATTAACAGCCTGTTGAACTTGTTTACCAAATTTACGTCGTTCTCTTATTTGTCTGGCACGTTCACGTAATGCTAATTTTTGTTTAGTTTCAATTAGATATTTTTTAACCTTTGTCATGTGATCATCTGTTTTGACCATTTCTGCAAAGTAATCAGATGGACGTTTAGTCGGTACATCTAAAGCGTGTAATTGAGGTATAGCTTTAAGCACTGCAGACTGAGCTACACGATAAAAAAAGTTTTCACGTTTAAAATCATCATCTGGATCGATATGTTGTAAGTCGTCCAAATCTAAATCTTTTTGAGCTGGAGCTGCCGAACATGTGACATCTAATCGCTCAATCCATGGG                                                                          ]
[+] EMBL CD179385             [                                                                                                                                                                                                                                                                                                                         TTTCTTCTTTACGTGTTTGATTAACAGCCTGTTGAACTTGTTTACCAAATTTACGTCGTTCTCTTATTTGTCTGGCACGTTCACGTAATGCTAATTTTTGTTTAGTTTCAATTAGATGTTTTTTAACCTTTGTCATGTGATCATCTGTTTTGACCATTTCTGCAAAGTAATCAGATGGACGTTTAGTCGGTACATCTAAAGCGTGTAATTGAGGTATAGCTTTAAGCACTGCAGACTGAGCTACACGATAAAAAAAGTTTTCACGTTTAAAATCATCATCTGGATCGATATGTTGTTAGTCGTCCAAATCTAAATCTTTTTGAGCTGGAGCTGCCGAACATGTGACATCTAATCGCTCAATCCATGGGAGACTTTTTCTGATACTACTGAGAGTATTTATAAGAGCTGACTTATTATATACATGTTTCTTTTCATGTGTAA ]
[-] EMBL CD161421             [                                                                                                                                                                                                                                                                                                                          TTCTTCTTTACGTGTTTGATTAACAGCCTGTTGAACTTGTTTACCAAATTTACGTCGTTCTCTTATTTGTCTGGCACGTTCACGTAATGCTAATTTTTGTTTAGTTTCAATTAGATATTTTTTAACCTTTGTCATGTGATCATCTGTTTTGACCATTTCTGCAAAGTAATCAGATGGACGTTTAGTCGGTACATCTAAAGCGTGTAATTGAGGTATAGCTTTAAGCACTGCAGACTGAGCTACACGATAAAAAAAGTTTTCACGTTTAAAATCATCATCTGGATCGATATGTTGTAAGTCGTCCAAATCTAAATCTTTTTGAGCTGGAGCTGCCGAACATGTGACATCTAATCGCTCAATCCATGGGAGACTTTTTCTGATACTACTGAGAGTATTTATAAGAGCTGACTTATTATATACATGTTTCTTTTCATGTGTAAT]




>consensus_8903#0
TTAATTGACTGAAATCACGTCGAGCTCCAATATTAACTGATTCAGATGTATTACGTTTTT
GACGTTTTTTCTGTCCACCATGACCATATTTATTATTTTTATAAACACGTTTTTGATTAG
TCTTTCGTCGATTTGCATAATCTTTTGCTGTATGGAAACTTTTCAATGATGATGATGATC
CTTTCACATTGGATTTATCATTTTTCGGTTCATAATCTTTTTTAAATTCATTTAATATTT
GTTCCAGTTTCTCTTCACGATTAATTCCAGTTTTCTTCCATGTACTCTTTACAGCTTCTG
TTAGTTTACGTTTTTCTTCTTTACGTGTTTGATTAACAGCCTGTTGAACTTGTTTACCAA
ATTTACGTCGTTCTCTTATTTGTCTGGCACGTTCACGTAATGCTAATTTTTGTTTAGTTT
CAATTAGATATTTTTTAACCTTTGTCATGTGATCATCTGTTTTGACCATTTCTGCAAAGT
AATCAGATGGACGTTTAGTCGGTACATCTAAAGCGTGTAATTGAGGTATAGCTTTAAGCA
CTGCAGACTGAGCTACACGATAAAAAAAGTTTTCACGTTTAAAATCATCATCTGGATCGA
TATGTTGTAAGTCGTCCAAATCTAAATCTTTTTGAGCTGGAGCTGCCGAACATGTGACAT
CTAATCGCTCAATCCATGGGAGACTTTTTCTGATACTACTGAGAGTATTTATAAGAGCTG
ACTTATTATATACATGTTTCTTTTCATGTGTAAT

consensusID : consensus_8903#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 396
fasta sequence

                              [GTCAATAATAGGGCGAGGTTTTGGTTAACGATTATGAGATTTATATACTGAGGAATTAGTTTCCATTAGATATTTTTTAACCTTTGTCATGTGATCATCTGTTTTGACCATTTCTGCGAAGTAATCAGATGGACGTTTAGTCGGTACATCTAAAGCGTGTAATTGAGGTATAGCTTTAAGCACTGCAGACTGAGCTACACGATAAAAAAAGTTTTCACGTTTAAAATCATCATCTGGATCGATATGTTGTAAGTCGTCCAAATCTAAATCTTTTTGAGCTGGAGCTGCCGAACATGTGACATCTAATCGCTCAATCCATGGGAGACTTTTTCTGATACTACTGAGAGTATTTATAAGAGCTGACTTATTATAGACATGTTTCTTTTCATGTGTAAT]

[-] EMBL CD091695             [GTCAATAATAGGGCGAGGTTTTGGTTAACGATTATGAGATTTATATACTGAGGAATTAGTTTCCATTAGATATTTTTTAACCTTTGTCATGTGATCATCTGTTTTGACCATTTCTGCGAAGTAATCAGATGGACGTTTAGTCGGTACATCTAAAGCGTGTAATTGAGGTATAGCTTTAAGCACTGCAGACTGAGCTACACGATAAAAAAAGTTTTCACGTTTAAAATCATCATCTGGATCGATATGTTGTAAGTCGTCCAAATCTAAATCTTTTTGAGCTGGAGCTGCCGAACATGTGACATCTAATCGCTCAATCCATGGGAGACTTTTTCTGATACTACTGAGAGTATTTATAAGAGCTGACTTATTATAGACATGTTTCTTTTCATGTGTAAT]




>consensus_8903#1
GTCAATAATAGGGCGAGGTTTTGGTTAACGATTATGAGATTTATATACTGAGGAATTAGT
TTCCATTAGATATTTTTTAACCTTTGTCATGTGATCATCTGTTTTGACCATTTCTGCGAA
GTAATCAGATGGACGTTTAGTCGGTACATCTAAAGCGTGTAATTGAGGTATAGCTTTAAG
CACTGCAGACTGAGCTACACGATAAAAAAAGTTTTCACGTTTAAAATCATCATCTGGATC
GATATGTTGTAAGTCGTCCAAATCTAAATCTTTTTGAGCTGGAGCTGCCGAACATGTGAC
ATCTAATCGCTCAATCCATGGGAGACTTTTTCTGATACTACTGAGAGTATTTATAAGAGC
TGACTTATTATAGACATGTTTCTTTTCATGTGTAAT

consensusID : consensus_8903#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 351
fasta sequence

                              [AGTTTCAGTTAGATATTGTTTAACCTTTGTCATGTGATCATCTGTTTTGACCATTTCTGCAAAGTAATCAGATGGACGTTTAGTCGGTACATATAAAGCGTGTAATTGAGGTATAGCTTTAAGCACTGCAGAGTGAGCTACACGATAAAAGAAGTTTTCACGTTTAAAATCATCATCTGGATCGATATGTTGTAAGTCGTCCAAATGTAAATCTTTTTGAGCTGGAGCTGCCGAACATGTGACATATAATCGCTCAATCCATGGAGAGACTTTTTCTGATCACGCGCTGAGGAGTATCTTCATAAGCACGCTGGGCTCTATTATACACCACGTATCTCTTTAGACAGGGAT]

[-] EMBL CD091743             [AGTTTCAGTTAGATATTGTTTAACCTTTGTCATGTGATCATCTGTTTTGACCATTTCTGCAAAGTAATCAGATGGACGTTTAGTCGGTACATATAAAGCGTGTAATTGAGGTATAGCTTTAAGCACTGCAGAGTGAGCTACACGATAAAAGAAGTTTTCACGTTTAAAATCATCATCTGGATCGATATGTTGTAAGTCGTCCAAATGTAAATCTTTTTGAGCTGGAGCTGCCGAACATGTGACATATAATCGCTCAATCCATGGAGAGACTTTTTCTGATCACGCGCTGAGGAGTATCTTCATAAGCACGCTGGGCTCTATTATACACCACGTATCTCTTTAGACAGGGAT]




>consensus_8903#2
AGTTTCAGTTAGATATTGTTTAACCTTTGTCATGTGATCATCTGTTTTGACCATTTCTGC
AAAGTAATCAGATGGACGTTTAGTCGGTACATATAAAGCGTGTAATTGAGGTATAGCTTT
AAGCACTGCAGAGTGAGCTACACGATAAAAGAAGTTTTCACGTTTAAAATCATCATCTGG
ATCGATATGTTGTAAGTCGTCCAAATGTAAATCTTTTTGAGCTGGAGCTGCCGAACATGT
GACATATAATCGCTCAATCCATGGAGAGACTTTTTCTGATCACGCGCTGAGGAGTATCTT
CATAAGCACGCTGGGCTCTATTATACACCACGTATCTCTTTAGACAGGGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8903#0      TTAATTGACTGAAATCACGTCGAGCTCCAATATTAACTGATTCAGATGTATTACGTTTTT 60
consensus_8903#2      ------------------------------------------------------------
consensus_8903#1      ------------------------------------------------------------
                                                                                  

consensus_8903#0      GACGTTTTTTCTGTCCACCATGACCATATTTATTATTTTTATAAACACGTTTTTGATTAG 120
consensus_8903#2      ------------------------------------------------------------
consensus_8903#1      ------------------------------------------------------------
                                                                                  

consensus_8903#0      TCTTTCGTCGATTTGCATAATCTTTTGCTGTATGGAAACTTTTCAATGATGATGATGATC 180
consensus_8903#2      ------------------------------------------------------------
consensus_8903#1      ------------------------------------------------------------
                                                                                  

consensus_8903#0      CTTTCACATTGGATTTATCATTTTTCGGTTCATAATCTTTTTTAAATTCATTTAATATTT 240
consensus_8903#2      ------------------------------------------------------------
consensus_8903#1      ------------------------------------------------------------
                                                                                  

consensus_8903#0      GTTCCAGTTTCTCTTCACGATTAATTCCAGTTTTCTTCCATGTACTCTTTACAGCTTCTG 300
consensus_8903#2      ------------------------------------------------------------
consensus_8903#1      ------------------------------------------------------------
                                                                                  

consensus_8903#0      TTAGTTTACGTTTTTCTTCTTTACGTGTTTGATTAACAGCCTGTTGAACTTGTTTACCAA 360
consensus_8903#2      ------------------------------------------------------------
consensus_8903#1      -------------------------------------------------------GTCAA 5
                                                                                  

consensus_8903#0      ATTTACGTCGTTCTCTTATTTGTCTGGCACGTTCACGTAATGCTAATTTTTGTTTAGTTT 420
consensus_8903#2      -------------------------------------------------------AGTTT 5
consensus_8903#1      TAATAGGGCGAGGTTTTGGTTAACGATTATGAGATTTATATACTGA---GGAATTAGTTT 62
                                                                             *****

consensus_8903#0      CAATTAGATATTTTTTAACCTTTGTCATGTGATCATCTGTTTTGACCATTTCTGCAAAGT 480
consensus_8903#2      CAGTTAGATATTGTTTAACCTTTGTCATGTGATCATCTGTTTTGACCATTTCTGCAAAGT 65
consensus_8903#1      CCATTAGATATTTTTTAACCTTTGTCATGTGATCATCTGTTTTGACCATTTCTGCGAAGT 122
                      *  ********* ****************************************** ****

consensus_8903#0      AATCAGATGGACGTTTAGTCGGTACATCTAAAGCGTGTAATTGAGGTATAGCTTTAAGCA 540
consensus_8903#2      AATCAGATGGACGTTTAGTCGGTACATATAAAGCGTGTAATTGAGGTATAGCTTTAAGCA 125
consensus_8903#1      AATCAGATGGACGTTTAGTCGGTACATCTAAAGCGTGTAATTGAGGTATAGCTTTAAGCA 182
                      *************************** ********************************

consensus_8903#0      CTGCAGACTGAGCTACACGATAAAAAAAGTTTTCACGTTTAAAATCATCATCTGGATCGA 600
consensus_8903#2      CTGCAGAGTGAGCTACACGATAAAAGAAGTTTTCACGTTTAAAATCATCATCTGGATCGA 185
consensus_8903#1      CTGCAGACTGAGCTACACGATAAAAAAAGTTTTCACGTTTAAAATCATCATCTGGATCGA 242
                      ******* ***************** **********************************

consensus_8903#0      TATGTTGTAAGTCGTCCAAATCTAAATCTTTTTGAGCTGGAGCTGCCGAACATGTGACAT 660
consensus_8903#2      TATGTTGTAAGTCGTCCAAATGTAAATCTTTTTGAGCTGGAGCTGCCGAACATGTGACAT 245
consensus_8903#1      TATGTTGTAAGTCGTCCAAATCTAAATCTTTTTGAGCTGGAGCTGCCGAACATGTGACAT 302
                      ********************* **************************************

consensus_8903#0      CTAATCGCTCAATCCATGG-GAGACTTTTTCTGAT-----ACTACTGAGAGTATTTATAA 714
consensus_8903#2      ATAATCGCTCAATCCATGGAGAGACTTTTTCTGATCACGCGCTGAGGAGTATCTTCATAA 305
consensus_8903#1      CTAATCGCTCAATCCATGG-GAGACTTTTTCTGAT-----ACTACTGAGAGTATTTATAA 356
                       ****************** ***************      **   ***  * ** ****

consensus_8903#0      GA--GCTGA--CTTATTATATAC-ATGTTTCTTTTCATGT-GTAAT 754
consensus_8903#2      GCACGCTGGGCTCTATTATACACCACGTATCTCTTTAGACAGGGAT 351
consensus_8903#1      GA--GCTGA--CTTATTATAGAC-ATGTTTCTTTTCATGT-GTAAT 396
                      *   ****     ******* ** * ** *** ** *    *  **