These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8910#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 731 fasta sequence [AATATTATTATTGGTAGTAGTAGTAGTAACAATACTATCATCAGCTAAATCGAGTGGTGAATACACAATAAAACAAGTTAAATAACTTGGATGAAAAGAAAAATA-CTTGTCATTAGTAAAAACAATGATGAAGATTATAAGGATATTGAGAATATTATCACCTAGGTATGAATGAGAAAAAAAACAGCGGGACAAATGATAAACGACAAACTAGATAACAAAACAACAAGTACTAAATGCTTAGTT-AAAAATAGTGAGATAAAAATAAGCCATAATTATGGAGACGAAATCGAAGTAAAGAAATACAGATCACTAAATAATAAAAATGGATATTTCGTCATGTTAACGCCGACCACTGTGTGTTGGTAGAATTACTGGAGGTGGCGAAAATGTTTTTAAAATTGATTCACATTGCATGTTAAGCGTATAACTCAATGATTGATTAGGATTGCATGGAGTACAGTTGGTACAACTAGTACTAGTTGTAACATTGGGGATAATCCTACTGTTTGAAGTGGTCACATTAGCTGCTACATTCTGATTTAAGCAAACTGTACTTTCTTGTGATAAGCATGTTTGTGATTTGTTCTTTGATTCAGATCGTTTCAATGATGCTTTTGAACTAAATATAGAAAGAGGTAGGCTTTGTCGAGATAACTCAAATATGGAAGCATCTGTATATGTGAGTTTTGTTCTTGTTTTGCCTCGTGCCGATCATGGCCTCGAGGCCA] [+] EMBL CD076170 [AATATTATTATTGGTAGTAGTAGTAGTAACAATACTATCATCAGCTAAATCGAGTGGTGAATACACAATAAAACAAGTTAAATAACTTGGATGAAAAGAAAAATA CTTGTCATTAGTAAAAACAATGATGAAGATTATAAGGATATTGAGAATATTATCACCTAGGTATGAATGAGAAAAAAAACAGCGGGACAAATGATAAACGACAAACTAGATAACAAAACAACAAGTACTAAATGCTTAGTT AAAAATAGTGAGATAAAAATAAGCCATAATTATGGAGACGAAATCGAAGTAAAGAAATACAGATCACTAAATAATAAAAATGGATATTTCGTCATGTTAACGCCGACCACTGTGTGTTGGTAGAATTACTGGAGGTGGCGAAAATGTTTTTAAAATTGATTCACATTGCATGTTAAGCGTATAACTCAATGATTGATTAGGATTGCATGGAGTACAGTTGGTACAACTAGTACTAGTTGTAACATTGGGGATAATCCTACTGTTTGAAGTGGTCACATTAGCTGCTACATTCTGATTTAAGCAAACTGTACTTTCTTGTGATAAGCATGTTTGTGATTTGTTCTTTGATTCAGATCGTTTCAATGATGCTTTTGA ] [+] EMBL AA999571 [AATATTATTATTGGTAGTAGTAGTAGTAACAATACTATCATCAGCTAAATCGAGTGGTGAATACACAATAAAACAAGTTAAATAACTTGGATGAAAAGAAAAATATCTTGTCATTAGTAAAAACAATGATGAAGATTATAAGGATATTGAGAATATTATCACCTAGGTATGAATGAGAAAAAAAACAGCGGGACAAATGATAAACGACAAACTAGATAACAAAACCACAAGTACTAAATGCTTAGTTAAAAAATAGTGAGATAAAA ] [-] EMBL CD083883 [ ATAAGCCATAATTATGGAGACGAAATCGAAGTAAAGAAATACAGATCACTAAATAATAAAAATGGATATTTCGTCATGTTAACGCCGACCACTGTGTGTTGGTAGAATTACTGGAGGTGGCGAAAATGTTTTTAAAATTGATTCACATTGCATGTTAAGCGTATAACTCAATGATTGATTAGGATTGCATGGAGTACAGTTGGTACAACTAGTACTAGTTGTAACATTGGGGATAATCCTACTGTTTGAAGTGGTCACATTAGCTGCTACATTCTGATTTAAGCAAACTGTACTTTCTTGTGATAAGCATGTTTGTGATTTGTTCTTTGATTCAGATCGTTTCAATGATGCTTTTGAACTAAATATAGAAAGAGGTAGGCTTTGTCGAGATAACTCAAATATGGAAGCATCTGTATATGTGAGTTTTGTTCTTGTTTTGCCTCGTGCCGATCATGGCCTCGAGGCCA] consensusID : consensus_8910#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 612 fasta sequence [AAACTGTACTTTCTGTGNATAAGCATGTTTGTGATTTGTTCTTTGATTCAGATCGTTTCAATGATGCTTNTGAACTAAACATAGAAAGAGGTAGGCTTTGTCGAGATAACTCAAATATGGAAGCATCTGTTATATGTGAGTTTTGTTCTTGTTTTGAATACATACCCAATGATGTGGATAGAAATGATGTAGACGGCTTTTTAGGATATCGGAAATGTTGTAATAATGTTCGGCTTTCAACTGGTGATAGAATACCTTGACTACCTATTTGACAATCATTTTTTACGGAGTCCAATGTTCGATAACTGGGATGCGCCCATGAACTAGCGCAATATGCTTCAATAACTTGTAGGATTTTCGTATCATCCACTGTCCGAAGTTCATTTTCATGGATTTTCCCAGCTGAACGTAATACATCTTCCGCAGTGATAGCACTTTTCTGACGATCACCACGTTTACGACGTAATTCCTTACTTGAATCGGTAACCTTAGGACTTTGAGCTCTCACGCGGTTGTGTTGATTCTTGTGCAAAATAGAAAAATCTACCAACAGACCAGGAATATTTTGATCAATAAGTAATCCCAAGTTATTTAATACATTAACTGAGCCGA] [-] EMBL CD082572 [AAACTGTACTTTCTGTGNATAAGCATGTTTGTGATTTGTTCTTTGATTCAGATCGTTTCAATGATGCTTNTGAACTAAACATAGAAAGAGGTAGGCTTTGTCGAGATAACTCAAATATGGAAGCATCTGTTATATGTGAGTTTTGTTCTTGTTTTGAATACATACCCAATGATGTGGATAGAAATGATGTAGACGGCTTTTTAGGATATCGGAAATGTTGTAATAATGTTCGGCTTTCAACTGGTGATAGAATACCTTGACTACCTATTTGACAATCATTTTTTACGGAGTCCAATGTTCGATAACTGGGATGCGCCCATGAACTAGCGCAATATGCTTCAATAACTTGTAGGATTTTCGTATCATCCACTGTCCGAAGTTCATTTTCATGGATTTTCCCAGCTGAACGTAATACATCTTCCGCAGTGATAGCACTTTTCTGACGATCACCACGTTTACGACGTAATTCCTTACTTGAATCGGTAACCTTAGGACTTTGAGCTCTCACGCGGTTGTGTTGATTCTTGTGCAAAATAGAAAAATCTACCAACAGACCAGGAATATTTTGATCAATAAGTAATCCCAAGTTATTTAATACATTAACTGAGCCGA] [-] EMBL CD083750 [ CTAAACATAGAAAGAGGTAGGCTTTGTCGAGATAACTCAAATATGGAAGCATCTGTTATATGTGAGTTTTGTTCTTGTTTTGAATACATACCCAATGATGTGGATAGAAATGATGTAGACGGCTTTTTAGGATATCGGAAATGTTGTAATAATGTTCGGCTTTCAACTGGTGATAGAATACCTTGACTACCTATTTGACAATCATTTTTTACGGAGTCCAATGTTCGATAACTGGGATGCGCCCATGAACTAGCGCAATATGCTTCAATAACTTGTAGGATTTTCGTATCATCCACTGTCCGAAGTTCATTTTCATGGATTTTCCCAGCTGAACGTAATACATCTTCCGCAGTGATAGCACTTTTCTGACGATCACCACGTTTACGACGTAATTCCTTACTTGAATCGGTAACCTTAG ] [+] EMBL CD144689 [ ccACGGAGTCCAATGTTCGATAACTGGGATGCGCCCATGAACTAACGCAATATGCTTCAATAACTTGTAGGATTTTCGTATCATCCACTGTCCGAAGTTCATTTTCATGGATTTTCCCAGCTGAACGTAATACATCTTCCGCAGAGATAGCACTTTTCTGACGATCACCACGTTTACGACGTAATTCCTTACTTGctccgtgg ] consensusID : consensus_8910#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 534 fasta sequence [CACGAGGTTTCCTTACAAACTTTCCTTGTAGTTATAAACATCCAATTTTATATGTCTAAAAATTTTGAAATGTAAATGGAGAATATTTTGCTAGTTTCTCGCAAATAACTCTTATCGATCATCTGATTTGTTTATAAATAATAATTTAGATCTCTCAAAATATTACTTAGTTCTGGGGTTAACATTTTAAATACCTCGTCTAATCTTTCTAGTTCTCTTCAATAATCCACTGTAATTTAAGCTATACTAATCTTGGCACTTTCTGATCCGTCTTTTTTCTATGCTTAAAATTAGTGGACTCCGTAAAAAATGATTGTCAAATAGGTAGTCAAGGTATTCTATCACCAGTTGAAAGCCGAACATTATTACAACATTTCCGATATCCTAAAAAGCCGTCTACATCATTTCTATCCACATCATTGGGTATGTATTCAAAACAAGAACAAAACTCACATATTACAGATGCTTCCATATTTGAGTTATCTCGACAAAGGCTAACTCTTTCTATGTTTAGTTCAAAAGCATCATTGAAAC] [+] EMBL CD083806 [CACGAGGTTTCCTTACAAACTTTCCTTGTAGTTATAAACATCCAATTTTATATGTCTAAAAATTTTGAAATGTAAATGGAGAATATTTTGCTAGTTTCTCGCAAATAACTCTTATCGATCATCTGATTTGTTTATAAATAATAATTTAGATCTCTCAAAATATTACTTAGTTCTGGGGTTAACATTTTAAATACCTCGTCTAATCTTTCTAGTTCTCTTCAATAATCCACTGTAATTTAAGCTATACTAATCTTGGCACTTTCTGATCCGTCTTTTTTCTATGCTTAAAATTAGTGGACTCCGTAAAAAATGATTGTCAAATAGGTAGTCAAGGTATTCTATCACCAGTTGAAAGCCGAACATTATTACAACATTTCCGATATCCTAAAAAGCCGTCTACATCATTTCTATCCACATCATTGGGTATGTATTCAAAACAAGAACAAAACTCACATATTACAGATGCTTCCATATTTGAGTTATCTCGACAAAGGCTAACTCTTTCTATGTTTAGTTCAAAAGCATCATTGAAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8910#0 AATATTATTATTGGTAGTAGTAGTAGTAACAATACTATCATCAGCTAAATCGAGTGGTGA 60 consensus_8910#1 ------------------------------------------------------------ consensus_8910#2 ------------------------------------------------------------ consensus_8910#0 ATACACAATAAAACAAGTTAAATAACTTGGATGAAAAGAAAAATACTTGTCATTAGTAAA 120 consensus_8910#1 -------------------------------------AAACTGTACTTTCTGTGNATAAG 23 consensus_8910#2 ----------------------------------------CACGAGGTTTCCTTACAAAC 20 * * * ** consensus_8910#0 AACAATGATGAAGATTATAAGGATATTGAGAATATTATCACC-TAGGTATGAATGAGAAA 179 consensus_8910#1 CATGTTTGTGA--TTTGTTCTTTGATTCAGATCGTTTCAATGATGCTTNTGAACTAAACA 81 consensus_8910#2 TTTCCTTGTAGTTATAAACATCCAATTTTATATGTCTAAAAATT--TTGAAATGTAAATG 78 * * * *** * * * * * * * consensus_8910#0 AAAAACAGCGGGACAAATGATAAACGACAAACTAGAT--AACAAAACAACAAGTACTAAA 237 consensus_8910#1 TAGAA-AGAGGTAGGCTTTGTCGA-GATAACTCAAAT--ATGGAAGCATC---TGTTATA 134 consensus_8910#2 GAGAATATTTTGCTAGTTTCTCGCAAATAACTCTTATCGATCATCTGATTTGTTTATAAA 138 * ** * * * * ** ** * * * ** * consensus_8910#0 TGCTTAGTTAAAAATAGTGAGATAAAAATAAGCCATAATTATGGAGACGAAATCGAAGTA 297 consensus_8910#1 TG-TGAGTTTTGT-TCTTGTTTTGAATACATACC-CAATGATGTGGATAGAAATGATGTA 191 consensus_8910#2 TAATAATTTAGAT------CTCTCAAAATATTACTTAGTTCTGGGGTTAACATTTTAAAT 192 * * * ** * ** * * * * * ** * * consensus_8910#0 AAGAAATACAGATCACTAAATAATAAAAATGGATATTTCGTCATGTTAACGCCGACCACT 357 consensus_8910#1 GA------CGGCTTTTTAGGATAT-----CGGAAATGTTGTAATAATGTT--CGGCTTTC 238 consensus_8910#2 ACCTCGTCTAATCTTTCTAGTTCT---CTTCAATAATCCACTGTAATTTA---AGCTAT- 245 * * * * * * consensus_8910#0 GTGTGTTGGTAGAATTACTGGAGGTGGCGAAAAT--GTTTTTAAAATTGATTCACATTGC 415 consensus_8910#1 AACTGGTGATAGAATACCTTGAC-TACCTA--------TTTGACAATCATTTTTTACGGA 289 consensus_8910#2 -ACTAATCTTGGCACTTTCTGATCCGTCTTTTTTCTATGCTTAAAATTAGTGGACTCCGT 304 * * * * * ** * * * *** * * consensus_8910#0 ATGTTAAGCGTATAACTCAATGATTGATTAGGATTGCATGGAGTACAGTTGGTACAACTA 475 consensus_8910#1 GTCCAATGTTCGATAACTGGGATGCGCCCATGAACTAGCGCAATATGCTTCA-ATAACTT 348 consensus_8910#2 AAAAAATGATTGTCA---AATAGGTAGTCAAGGTATTCTATCAC-CAGTTGA-AAGCCGA 359 * * * * * ** * * consensus_8910#0 GTACTAGTTGTAACATTGGGGATAATCCTA----CTGTTTGAAGTGGTCACATTAGCTGC 531 consensus_8910#1 GTAGGATTT-TCGTATCATCCACTGTCCGAAGT-TCATTTTCATGGATTTTCCCAGCTGA 406 consensus_8910#2 ACATTA-TTACAACATTTCCGATATCCTAAAAAGCCGTCTACATCATTTCTATCCACATC 418 * * ** ** * * * * * * * * consensus_8910#0 -TACATTCTGATTTAAGCAA--ACTGTACTTTCTTG-TGATAAGCATGTTTGTGATTTGT 587 consensus_8910#1 ACGTAATACATCTTCCGCAGTGATAGCACTTTTCTGACGATCACCACGTTTACGACGTAA 466 consensus_8910#2 ATTGGGTATGTATTCAA-AACAAGAACA-----------AAACTCACATATTACAGATGC 466 * ** * * * * ** * * * * consensus_8910#0 TCTTTGATTCAGATCGTTTCAATGATGCTTTTGAACTAAATATAGAAAGAGGT---AGGC 644 consensus_8910#1 TTCCTTACTTGAATCGGTAACCTTAGGACTTTGAGCTCTCACGCGGTTGTGTT---GATT 523 consensus_8910#2 TTCCATATTTGAGTTATCTCGACAAAGGCT---AACTCTTTCTATGTTTAGTTCAAAAGC 523 * * * * * * * * ** * * consensus_8910#0 TTTGTCGAGATAACTCAAATATGGAAGCATCTGTATATGTGAGTTTTGTTCT-TGTTTTG 703 consensus_8910#1 CTTGTGCAAAATAGAAAAATCTACCAACA---GACCAGGAATATTTTGATCAATAAGTAA 580 consensus_8910#2 ATCATTGAAAC------------------------------------------------- 534 * * * * consensus_8910#0 CCTCGTGCCGATCATGGCCTCGA---GGCCA- 731 consensus_8910#1 TCCCAAGTTATTTAATACATTAACTGAGCCGA 612 consensus_8910#2 -------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||