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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8910#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 731 fasta sequence
[AATATTATTATTGGTAGTAGTAGTAGTAACAATACTATCATCAGCTAAATCGAGTGGTGAATACACAATAAAACAAGTTAAATAACTTGGATGAAAAGAAAAATA-CTTGTCATTAGTAAAAACAATGATGAAGATTATAAGGATATTGAGAATATTATCACCTAGGTATGAATGAGAAAAAAAACAGCGGGACAAATGATAAACGACAAACTAGATAACAAAACAACAAGTACTAAATGCTTAGTT-AAAAATAGTGAGATAAAAATAAGCCATAATTATGGAGACGAAATCGAAGTAAAGAAATACAGATCACTAAATAATAAAAATGGATATTTCGTCATGTTAACGCCGACCACTGTGTGTTGGTAGAATTACTGGAGGTGGCGAAAATGTTTTTAAAATTGATTCACATTGCATGTTAAGCGTATAACTCAATGATTGATTAGGATTGCATGGAGTACAGTTGGTACAACTAGTACTAGTTGTAACATTGGGGATAATCCTACTGTTTGAAGTGGTCACATTAGCTGCTACATTCTGATTTAAGCAAACTGTACTTTCTTGTGATAAGCATGTTTGTGATTTGTTCTTTGATTCAGATCGTTTCAATGATGCTTTTGAACTAAATATAGAAAGAGGTAGGCTTTGTCGAGATAACTCAAATATGGAAGCATCTGTATATGTGAGTTTTGTTCTTGTTTTGCCTCGTGCCGATCATGGCCTCGAGGCCA]
[+] EMBL CD076170 [AATATTATTATTGGTAGTAGTAGTAGTAACAATACTATCATCAGCTAAATCGAGTGGTGAATACACAATAAAACAAGTTAAATAACTTGGATGAAAAGAAAAATA CTTGTCATTAGTAAAAACAATGATGAAGATTATAAGGATATTGAGAATATTATCACCTAGGTATGAATGAGAAAAAAAACAGCGGGACAAATGATAAACGACAAACTAGATAACAAAACAACAAGTACTAAATGCTTAGTT AAAAATAGTGAGATAAAAATAAGCCATAATTATGGAGACGAAATCGAAGTAAAGAAATACAGATCACTAAATAATAAAAATGGATATTTCGTCATGTTAACGCCGACCACTGTGTGTTGGTAGAATTACTGGAGGTGGCGAAAATGTTTTTAAAATTGATTCACATTGCATGTTAAGCGTATAACTCAATGATTGATTAGGATTGCATGGAGTACAGTTGGTACAACTAGTACTAGTTGTAACATTGGGGATAATCCTACTGTTTGAAGTGGTCACATTAGCTGCTACATTCTGATTTAAGCAAACTGTACTTTCTTGTGATAAGCATGTTTGTGATTTGTTCTTTGATTCAGATCGTTTCAATGATGCTTTTGA ]
[+] EMBL AA999571 [AATATTATTATTGGTAGTAGTAGTAGTAACAATACTATCATCAGCTAAATCGAGTGGTGAATACACAATAAAACAAGTTAAATAACTTGGATGAAAAGAAAAATATCTTGTCATTAGTAAAAACAATGATGAAGATTATAAGGATATTGAGAATATTATCACCTAGGTATGAATGAGAAAAAAAACAGCGGGACAAATGATAAACGACAAACTAGATAACAAAACCACAAGTACTAAATGCTTAGTTAAAAAATAGTGAGATAAAA ]
[-] EMBL CD083883 [ ATAAGCCATAATTATGGAGACGAAATCGAAGTAAAGAAATACAGATCACTAAATAATAAAAATGGATATTTCGTCATGTTAACGCCGACCACTGTGTGTTGGTAGAATTACTGGAGGTGGCGAAAATGTTTTTAAAATTGATTCACATTGCATGTTAAGCGTATAACTCAATGATTGATTAGGATTGCATGGAGTACAGTTGGTACAACTAGTACTAGTTGTAACATTGGGGATAATCCTACTGTTTGAAGTGGTCACATTAGCTGCTACATTCTGATTTAAGCAAACTGTACTTTCTTGTGATAAGCATGTTTGTGATTTGTTCTTTGATTCAGATCGTTTCAATGATGCTTTTGAACTAAATATAGAAAGAGGTAGGCTTTGTCGAGATAACTCAAATATGGAAGCATCTGTATATGTGAGTTTTGTTCTTGTTTTGCCTCGTGCCGATCATGGCCTCGAGGCCA]
consensusID : consensus_8910#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 612 fasta sequence
[AAACTGTACTTTCTGTGNATAAGCATGTTTGTGATTTGTTCTTTGATTCAGATCGTTTCAATGATGCTTNTGAACTAAACATAGAAAGAGGTAGGCTTTGTCGAGATAACTCAAATATGGAAGCATCTGTTATATGTGAGTTTTGTTCTTGTTTTGAATACATACCCAATGATGTGGATAGAAATGATGTAGACGGCTTTTTAGGATATCGGAAATGTTGTAATAATGTTCGGCTTTCAACTGGTGATAGAATACCTTGACTACCTATTTGACAATCATTTTTTACGGAGTCCAATGTTCGATAACTGGGATGCGCCCATGAACTAGCGCAATATGCTTCAATAACTTGTAGGATTTTCGTATCATCCACTGTCCGAAGTTCATTTTCATGGATTTTCCCAGCTGAACGTAATACATCTTCCGCAGTGATAGCACTTTTCTGACGATCACCACGTTTACGACGTAATTCCTTACTTGAATCGGTAACCTTAGGACTTTGAGCTCTCACGCGGTTGTGTTGATTCTTGTGCAAAATAGAAAAATCTACCAACAGACCAGGAATATTTTGATCAATAAGTAATCCCAAGTTATTTAATACATTAACTGAGCCGA]
[-] EMBL CD082572 [AAACTGTACTTTCTGTGNATAAGCATGTTTGTGATTTGTTCTTTGATTCAGATCGTTTCAATGATGCTTNTGAACTAAACATAGAAAGAGGTAGGCTTTGTCGAGATAACTCAAATATGGAAGCATCTGTTATATGTGAGTTTTGTTCTTGTTTTGAATACATACCCAATGATGTGGATAGAAATGATGTAGACGGCTTTTTAGGATATCGGAAATGTTGTAATAATGTTCGGCTTTCAACTGGTGATAGAATACCTTGACTACCTATTTGACAATCATTTTTTACGGAGTCCAATGTTCGATAACTGGGATGCGCCCATGAACTAGCGCAATATGCTTCAATAACTTGTAGGATTTTCGTATCATCCACTGTCCGAAGTTCATTTTCATGGATTTTCCCAGCTGAACGTAATACATCTTCCGCAGTGATAGCACTTTTCTGACGATCACCACGTTTACGACGTAATTCCTTACTTGAATCGGTAACCTTAGGACTTTGAGCTCTCACGCGGTTGTGTTGATTCTTGTGCAAAATAGAAAAATCTACCAACAGACCAGGAATATTTTGATCAATAAGTAATCCCAAGTTATTTAATACATTAACTGAGCCGA]
[-] EMBL CD083750 [ CTAAACATAGAAAGAGGTAGGCTTTGTCGAGATAACTCAAATATGGAAGCATCTGTTATATGTGAGTTTTGTTCTTGTTTTGAATACATACCCAATGATGTGGATAGAAATGATGTAGACGGCTTTTTAGGATATCGGAAATGTTGTAATAATGTTCGGCTTTCAACTGGTGATAGAATACCTTGACTACCTATTTGACAATCATTTTTTACGGAGTCCAATGTTCGATAACTGGGATGCGCCCATGAACTAGCGCAATATGCTTCAATAACTTGTAGGATTTTCGTATCATCCACTGTCCGAAGTTCATTTTCATGGATTTTCCCAGCTGAACGTAATACATCTTCCGCAGTGATAGCACTTTTCTGACGATCACCACGTTTACGACGTAATTCCTTACTTGAATCGGTAACCTTAG ]
[+] EMBL CD144689 [ ccACGGAGTCCAATGTTCGATAACTGGGATGCGCCCATGAACTAACGCAATATGCTTCAATAACTTGTAGGATTTTCGTATCATCCACTGTCCGAAGTTCATTTTCATGGATTTTCCCAGCTGAACGTAATACATCTTCCGCAGAGATAGCACTTTTCTGACGATCACCACGTTTACGACGTAATTCCTTACTTGctccgtgg ]
consensusID : consensus_8910#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 534 fasta sequence
[CACGAGGTTTCCTTACAAACTTTCCTTGTAGTTATAAACATCCAATTTTATATGTCTAAAAATTTTGAAATGTAAATGGAGAATATTTTGCTAGTTTCTCGCAAATAACTCTTATCGATCATCTGATTTGTTTATAAATAATAATTTAGATCTCTCAAAATATTACTTAGTTCTGGGGTTAACATTTTAAATACCTCGTCTAATCTTTCTAGTTCTCTTCAATAATCCACTGTAATTTAAGCTATACTAATCTTGGCACTTTCTGATCCGTCTTTTTTCTATGCTTAAAATTAGTGGACTCCGTAAAAAATGATTGTCAAATAGGTAGTCAAGGTATTCTATCACCAGTTGAAAGCCGAACATTATTACAACATTTCCGATATCCTAAAAAGCCGTCTACATCATTTCTATCCACATCATTGGGTATGTATTCAAAACAAGAACAAAACTCACATATTACAGATGCTTCCATATTTGAGTTATCTCGACAAAGGCTAACTCTTTCTATGTTTAGTTCAAAAGCATCATTGAAAC]
[+] EMBL CD083806 [CACGAGGTTTCCTTACAAACTTTCCTTGTAGTTATAAACATCCAATTTTATATGTCTAAAAATTTTGAAATGTAAATGGAGAATATTTTGCTAGTTTCTCGCAAATAACTCTTATCGATCATCTGATTTGTTTATAAATAATAATTTAGATCTCTCAAAATATTACTTAGTTCTGGGGTTAACATTTTAAATACCTCGTCTAATCTTTCTAGTTCTCTTCAATAATCCACTGTAATTTAAGCTATACTAATCTTGGCACTTTCTGATCCGTCTTTTTTCTATGCTTAAAATTAGTGGACTCCGTAAAAAATGATTGTCAAATAGGTAGTCAAGGTATTCTATCACCAGTTGAAAGCCGAACATTATTACAACATTTCCGATATCCTAAAAAGCCGTCTACATCATTTCTATCCACATCATTGGGTATGTATTCAAAACAAGAACAAAACTCACATATTACAGATGCTTCCATATTTGAGTTATCTCGACAAAGGCTAACTCTTTCTATGTTTAGTTCAAAAGCATCATTGAAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8910#0 AATATTATTATTGGTAGTAGTAGTAGTAACAATACTATCATCAGCTAAATCGAGTGGTGA 60
consensus_8910#1 ------------------------------------------------------------
consensus_8910#2 ------------------------------------------------------------
consensus_8910#0 ATACACAATAAAACAAGTTAAATAACTTGGATGAAAAGAAAAATACTTGTCATTAGTAAA 120
consensus_8910#1 -------------------------------------AAACTGTACTTTCTGTGNATAAG 23
consensus_8910#2 ----------------------------------------CACGAGGTTTCCTTACAAAC 20
* * * **
consensus_8910#0 AACAATGATGAAGATTATAAGGATATTGAGAATATTATCACC-TAGGTATGAATGAGAAA 179
consensus_8910#1 CATGTTTGTGA--TTTGTTCTTTGATTCAGATCGTTTCAATGATGCTTNTGAACTAAACA 81
consensus_8910#2 TTTCCTTGTAGTTATAAACATCCAATTTTATATGTCTAAAAATT--TTGAAATGTAAATG 78
* * * *** * * * * * * *
consensus_8910#0 AAAAACAGCGGGACAAATGATAAACGACAAACTAGAT--AACAAAACAACAAGTACTAAA 237
consensus_8910#1 TAGAA-AGAGGTAGGCTTTGTCGA-GATAACTCAAAT--ATGGAAGCATC---TGTTATA 134
consensus_8910#2 GAGAATATTTTGCTAGTTTCTCGCAAATAACTCTTATCGATCATCTGATTTGTTTATAAA 138
* ** * * * * ** ** * * * ** *
consensus_8910#0 TGCTTAGTTAAAAATAGTGAGATAAAAATAAGCCATAATTATGGAGACGAAATCGAAGTA 297
consensus_8910#1 TG-TGAGTTTTGT-TCTTGTTTTGAATACATACC-CAATGATGTGGATAGAAATGATGTA 191
consensus_8910#2 TAATAATTTAGAT------CTCTCAAAATATTACTTAGTTCTGGGGTTAACATTTTAAAT 192
* * * ** * ** * * * * * ** * *
consensus_8910#0 AAGAAATACAGATCACTAAATAATAAAAATGGATATTTCGTCATGTTAACGCCGACCACT 357
consensus_8910#1 GA------CGGCTTTTTAGGATAT-----CGGAAATGTTGTAATAATGTT--CGGCTTTC 238
consensus_8910#2 ACCTCGTCTAATCTTTCTAGTTCT---CTTCAATAATCCACTGTAATTTA---AGCTAT- 245
* * * * * *
consensus_8910#0 GTGTGTTGGTAGAATTACTGGAGGTGGCGAAAAT--GTTTTTAAAATTGATTCACATTGC 415
consensus_8910#1 AACTGGTGATAGAATACCTTGAC-TACCTA--------TTTGACAATCATTTTTTACGGA 289
consensus_8910#2 -ACTAATCTTGGCACTTTCTGATCCGTCTTTTTTCTATGCTTAAAATTAGTGGACTCCGT 304
* * * * * ** * * * *** * *
consensus_8910#0 ATGTTAAGCGTATAACTCAATGATTGATTAGGATTGCATGGAGTACAGTTGGTACAACTA 475
consensus_8910#1 GTCCAATGTTCGATAACTGGGATGCGCCCATGAACTAGCGCAATATGCTTCA-ATAACTT 348
consensus_8910#2 AAAAAATGATTGTCA---AATAGGTAGTCAAGGTATTCTATCAC-CAGTTGA-AAGCCGA 359
* * * * * ** * *
consensus_8910#0 GTACTAGTTGTAACATTGGGGATAATCCTA----CTGTTTGAAGTGGTCACATTAGCTGC 531
consensus_8910#1 GTAGGATTT-TCGTATCATCCACTGTCCGAAGT-TCATTTTCATGGATTTTCCCAGCTGA 406
consensus_8910#2 ACATTA-TTACAACATTTCCGATATCCTAAAAAGCCGTCTACATCATTTCTATCCACATC 418
* * ** ** * * * * * * * *
consensus_8910#0 -TACATTCTGATTTAAGCAA--ACTGTACTTTCTTG-TGATAAGCATGTTTGTGATTTGT 587
consensus_8910#1 ACGTAATACATCTTCCGCAGTGATAGCACTTTTCTGACGATCACCACGTTTACGACGTAA 466
consensus_8910#2 ATTGGGTATGTATTCAA-AACAAGAACA-----------AAACTCACATATTACAGATGC 466
* ** * * * * ** * * * *
consensus_8910#0 TCTTTGATTCAGATCGTTTCAATGATGCTTTTGAACTAAATATAGAAAGAGGT---AGGC 644
consensus_8910#1 TTCCTTACTTGAATCGGTAACCTTAGGACTTTGAGCTCTCACGCGGTTGTGTT---GATT 523
consensus_8910#2 TTCCATATTTGAGTTATCTCGACAAAGGCT---AACTCTTTCTATGTTTAGTTCAAAAGC 523
* * * * * * * * ** * *
consensus_8910#0 TTTGTCGAGATAACTCAAATATGGAAGCATCTGTATATGTGAGTTTTGTTCT-TGTTTTG 703
consensus_8910#1 CTTGTGCAAAATAGAAAAATCTACCAACA---GACCAGGAATATTTTGATCAATAAGTAA 580
consensus_8910#2 ATCATTGAAAC------------------------------------------------- 534
* * * *
consensus_8910#0 CCTCGTGCCGATCATGGCCTCGA---GGCCA- 731
consensus_8910#1 TCCCAAGTTATTTAATACATTAACTGAGCCGA 612
consensus_8910#2 --------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||