cluster # 8911

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Schistosoma mansoni
cluster # 8911 cluster # 8911 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8911#0 length = 713 sequences # 4

consensus_8911#1 length = 400 sequences # 3

consensusID : consensus_8911#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 713
fasta sequence

                              [CATATATATATATATATATACACAAGACATCCATATCATCGTAACATATAGCACAATTAATTAAGAATAGCTAAAGTCAACAAGGAAGTAACATCAGGAGCATATGATGAAGTACTGCATTAACGACTTACTAATAGTCATAGGATGATATAAATAGTATGTGCTAAGTGTGTATGAGTGTGTGTATGCGTAAGTGTTGTCATGTTTATAAGTGTTGAAAATCTAAAATACGAAAAAGGTAAACAAAGAATATGGAGATGATGATCCGTGTAGATGAAACCGCGTGCTGATAATGGTCACTTGACATTCATTTCATGCGACATATAAAGAGAGAAGAAAAGAAGAAATATATCAAACAAAAGCTAGTTAGCTATTAAATGCGCTCGACAAATAGGCAGCAGAATACGACCAAGGGAACGGTTATTATTCATTACATTTAGAAGAGATGATATGGATAAGGTATTAGTTGGGCGGTGACAGTGGCTACAACGGATGTGAGGATTG-GTTGACTACCAACAGGAAAAGTCTTAGTTTATTTATAATCTGGTGTTTGTAATCAAATAACAGGAAAAAGTAATTTACGGGAACAACAGTGAAAGTTATGCTTCAAATCAGAAGACCAATTGGATAAAATAAAGGAAATACGATTAGTTGTCGAGAGAAATTTTATTTTGTTAAGATGATTGCAACATAGAACGAAGACTGCCAGGGTT]

[-] EMBL AI975281             [CATATATATATATATATATACACAAGACATCCATATCATCGTAACATATAGCACAATTAATTAAGAATAGCTAAAGTCAACAAGGAAGTAACATCAGGAGCATATGATGAAGTACTGCATTAACGACTTACTAATAGTCATAGGATGATATAAATAGTATGTGCTAAGTGTGTATGAGTGTGTGTATGCGTAAGTGTTGTCATGTTTATAAGTGTTGAAAATCTAAAATACGAAAAAGGTACACATAGAATATGGAGATGATGATCCGTGTAGATGAAACCGCGTGCTGATAATGGTCACTTGTCATTCATTTCATGCGACATATAA  AGAGAAGAAAAGAAGAAATATATCAAACGAAAGCTAGTTAGCTATTAAATGCGCTCGACATATAGGCAGCAGAATAGGACCAAGGGAACGGTTATTATTCATGACATTTAGAAGAGATGATATGGATAAGGTATTAGTTGGACGGTGACAGTGGCTACAACGGATGTGAGGATTGTGTTGACTACCA                                                                                                                                                                                                      ]
[+] EMBL CD168981             [                                                                                                                    GCATTAACTACTTATTAATAGTCATCTGATGATATAAATAGTATGTGCTAAGTGTGTATGAGTGTGTGTATGCGTAAGTGTTGTCATGTTTATAAGTGTTGAAAATCTAAAATACGAAAAAGGTAAACAAAGAATATGGAGATGATGATCCGTGTAGATGAAACCGCGTGCTGATAATGGTCACTTGACATTCATTTCATGCGACATATAAAGAGAGAAGAAAAGAAGAAATATATCAAACAAAAGCTAGTTAGCTATTAAATGCGCTCGACAAATAGGCAGCAGAATACGACCAAGGGAACGGTTATTATTCATTACATTTAGAAGAGATGATATGGATAAGGTATTAGTTGGGCGGTGACAGTGGCTACAACGGATGTGAGGATTG GTTGACTACCAACAGGAAAAGTCTTAGTTTATTTATAATCTGGTGTTTGTAATCAAATAACAGGAAAAAGTAATTTACGGGAACAACAGTGAAAGTTATGCTTCAAATCAGAAGACCAATTGGATAAAATAAAGGAAATACGATTAGTTGTCGAGAGAAATTTTATTTTGTTAAGATGATTGCAACATAGAACGAAGACTGCCAGGGTT]
[-] EMBL CD145416             [                                                                                                                                                                                                                 AAGTGTTGAAAATCTAAAATACGAAAAAGGTAAACAAAGAATATGGAGATGATGATCCGTGTAGATGAAACCGCGTGCTGATAATGGTCACTTGACATTCATTTCATGCGACATATAAAGAGAGAAGAAAAGAAGAAATATATCAAACAAAAGCTAGTTAGCTATTAAATGCGCTCGACAAATAGGCAGCAGAATACGACCAAGGGAACGGTTATTATTCATTACATTTAGAAGAGATGATATGGATAAGGTATTAGTTGGGCGGTGACAGTGGCTACAACGGATGTGAGGATTG GTTGACTACCAACAGGAAAAGTCTTAGTTTATTTATAATCTGGTGTTTGTAATCAAATAACAGGAAAAAGTAAT                                                                                                                                       ]
[+] EMBL CD075418             [                                                                                                                                                                                                                                                                                                                         CATGCGACATATAAAGAGAGAAGAAAAGAAGAAATATATCAAACAAAAGCTAGTTAGCTATTAAATGCGCTCGACAAATAGGCAGCAGAATACGACCAAGGGAACGGTTATTATTCATTACATTTAGAAGAGATGATATGGATAAGGTATTAGTTGGGCGGTGACAGTGGCTACAACGGATGTGAGGATTG GTTGACTACCAACAGGAAAAGTCTTAGTTTATTTATAATCTGGTGTTTGTAATCAAATAACAGGAAAAAGTAATTTACGGGAACAACAGTGAAAGTTATGCTTCAAATCAGAAGACCAATTGGATAAAATAAAGGAAATACGATTAGTTGTCGAGAGAAATTTTATTTTGTTAAGATGATTGCAACATAGAAC                ]




>consensus_8911#0
CATATATATATATATATATACACAAGACATCCATATCATCGTAACATATAGCACAATTAA
TTAAGAATAGCTAAAGTCAACAAGGAAGTAACATCAGGAGCATATGATGAAGTACTGCAT
TAACGACTTACTAATAGTCATAGGATGATATAAATAGTATGTGCTAAGTGTGTATGAGTG
TGTGTATGCGTAAGTGTTGTCATGTTTATAAGTGTTGAAAATCTAAAATACGAAAAAGGT
AAACAAAGAATATGGAGATGATGATCCGTGTAGATGAAACCGCGTGCTGATAATGGTCAC
TTGACATTCATTTCATGCGACATATAAAGAGAGAAGAAAAGAAGAAATATATCAAACAAA
AGCTAGTTAGCTATTAAATGCGCTCGACAAATAGGCAGCAGAATACGACCAAGGGAACGG
TTATTATTCATTACATTTAGAAGAGATGATATGGATAAGGTATTAGTTGGGCGGTGACAG
TGGCTACAACGGATGTGAGGATTGGTTGACTACCAACAGGAAAAGTCTTAGTTTATTTAT
AATCTGGTGTTTGTAATCAAATAACAGGAAAAAGTAATTTACGGGAACAACAGTGAAAGT
TATGCTTCAAATCAGAAGACCAATTGGATAAAATAAAGGAAATACGATTAGTTGTCGAGA
GAAATTTTATTTTGTTAAGATGATTGCAACATAGAACGAAGACTGCCAGGGTT

consensusID : consensus_8911#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 400
fasta sequence

                              [ATGCGACATATAAAGAGAGAAGAAAAGAAGAAATATATCAAA-CAAAAGCTAGTTAGCTATTAAATGCGCTCGACAAATAGGCAGCAGAATACGACCAAGGGAACGGTTATTATTCATTACATTTAGA-AGAGATGATATGGATAAGGTATTAGTTGGGCGGTGACAGTGGCTACAACGGATGTGAGGATTGGTTGACTACCAACAGGAAAAGTCTTAGTTTATTTATAATCTGGTGTTTGTAATCAAATAACAGGAAAAAGTAATTTACGGGAACAACAGTGAAAGTTATGCTTCAAATCAGAAGACCAATTGGATAAAATAAAGGAAATACGATTAGTTGTCGAGAGAGATTTTATTTTGTTAAAATGATTGCAACATAGAACGCGTCGTGCCGAATATG]

[-] EMBL CD081594             [ATGCGACATATAAAGAGAGAAGAAAAGAAGAAATATATCAAA CAAAAGCTAGTTAGCTATTAAATGCGCTCGACAAATAGGCAGCAGAATACGACCAAGGGAACGGTTATTATTCATTACATTTAGA AGAGATGATATGGATAAGGTATTAGTTGGGCGGTGACAGTGGCTACAACGGATGTGAGGATTGGTTGACTACCAACAGGAAAAGTCTTAGTTTATTTATAATCTGGTGTTTGTAATCAAATAACAGGAAAAAGTAATTTACGGGAACAACAGTGAAAGTTATGCTTCAAATCAGAAGACCAATTGGATAAAATAAAGGAAATACGATTAGTTGTCGAGAGAGATTTTATTTTGTTAAAATGATTGCAACATAGAACGCGTCGTGCCGAATATG]
[+] EMBL CD197030             [                          GAAGAAATATATCAAATCAAAAGCTAGTTAGCTATTAAATGCGCTCGACAAATAGGCAGCAGGATACGACCAAGGGAACGGTTATTATTCATTACATTTAGATAGAGATGATATGGATAAGGTATTAGTTGGGCGGTGACAGTGGCTACAACGGATGTGAGGATTGGTTGACTACCAACAGGAAAAGTCTTAGTTTATTTATAATCTGGTGTTTGTAATCAAATAACAGGAAAAAGTTATTTACGGGAACAACAGTGAAAGTTATGCTTCAAATCAGA                                                                                                  ]
[-] EMBL CD193551             [                                                                                         ATACGACCAAGGGAACGGTTATTATTCATTACATTTAGA AGAGATGATATGGATAAGGTATCAGTTGGGCGGTGACAGTGGCTACAACGGATGTGAGGATT                                                                                                                                                                                                                   ]




>consensus_8911#1
ATGCGACATATAAAGAGAGAAGAAAAGAAGAAATATATCAAACAAAAGCTAGTTAGCTAT
TAAATGCGCTCGACAAATAGGCAGCAGAATACGACCAAGGGAACGGTTATTATTCATTAC
ATTTAGAAGAGATGATATGGATAAGGTATTAGTTGGGCGGTGACAGTGGCTACAACGGAT
GTGAGGATTGGTTGACTACCAACAGGAAAAGTCTTAGTTTATTTATAATCTGGTGTTTGT
AATCAAATAACAGGAAAAAGTAATTTACGGGAACAACAGTGAAAGTTATGCTTCAAATCA
GAAGACCAATTGGATAAAATAAAGGAAATACGATTAGTTGTCGAGAGAGATTTTATTTTG
TTAAAATGATTGCAACATAGAACGCGTCGTGCCGAATATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8911#0      CATATATATATATATATATACACAAGACATCCATATCATCGTAACATATAGCACAATTAA 60
consensus_8911#1      ------------------------------------------------------------
                                                                                  

consensus_8911#0      TTAAGAATAGCTAAAGTCAACAAGGAAGTAACATCAGGAGCATATGATGAAGTACTGCAT 120
consensus_8911#1      ------------------------------------------------------------
                                                                                  

consensus_8911#0      TAACGACTTACTAATAGTCATAGGATGATATAAATAGTATGTGCTAAGTGTGTATGAGTG 180
consensus_8911#1      ------------------------------------------------------------
                                                                                  

consensus_8911#0      TGTGTATGCGTAAGTGTTGTCATGTTTATAAGTGTTGAAAATCTAAAATACGAAAAAGGT 240
consensus_8911#1      ------------------------------------------------------------
                                                                                  

consensus_8911#0      AAACAAAGAATATGGAGATGATGATCCGTGTAGATGAAACCGCGTGCTGATAATGGTCAC 300
consensus_8911#1      ------------------------------------------------------------
                                                                                  

consensus_8911#0      TTGACATTCATTTCATGCGACATATAAAGAGAGAAGAAAAGAAGAAATATATCAAACAAA 360
consensus_8911#1      --------------ATGCGACATATAAAGAGAGAAGAAAAGAAGAAATATATCAAACAAA 46
                                    **********************************************

consensus_8911#0      AGCTAGTTAGCTATTAAATGCGCTCGACAAATAGGCAGCAGAATACGACCAAGGGAACGG 420
consensus_8911#1      AGCTAGTTAGCTATTAAATGCGCTCGACAAATAGGCAGCAGAATACGACCAAGGGAACGG 106
                      ************************************************************

consensus_8911#0      TTATTATTCATTACATTTAGAAGAGATGATATGGATAAGGTATTAGTTGGGCGGTGACAG 480
consensus_8911#1      TTATTATTCATTACATTTAGAAGAGATGATATGGATAAGGTATTAGTTGGGCGGTGACAG 166
                      ************************************************************

consensus_8911#0      TGGCTACAACGGATGTGAGGATTGGTTGACTACCAACAGGAAAAGTCTTAGTTTATTTAT 540
consensus_8911#1      TGGCTACAACGGATGTGAGGATTGGTTGACTACCAACAGGAAAAGTCTTAGTTTATTTAT 226
                      ************************************************************

consensus_8911#0      AATCTGGTGTTTGTAATCAAATAACAGGAAAAAGTAATTTACGGGAACAACAGTGAAAGT 600
consensus_8911#1      AATCTGGTGTTTGTAATCAAATAACAGGAAAAAGTAATTTACGGGAACAACAGTGAAAGT 286
                      ************************************************************

consensus_8911#0      TATGCTTCAAATCAGAAGACCAATTGGATAAAATAAAGGAAATACGATTAGTTGTCGAGA 660
consensus_8911#1      TATGCTTCAAATCAGAAGACCAATTGGATAAAATAAAGGAAATACGATTAGTTGTCGAGA 346
                      ************************************************************

consensus_8911#0      GAAATTTTATTTTGTTAAGATGATTGCAACATAGAACGAAGACTGCCAGGGTT- 713
consensus_8911#1      GAGATTTTATTTTGTTAAAATGATTGCAACATAGAACGCGTCGTGCCGAATATG 400
                      ** *************** *******************     ****     *