cluster # 8912

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Schistosoma mansoni
cluster # 8912 cluster # 8912 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8912#0 length = 952 sequences # 5

consensus_8912#1 length = 353 sequences # 1
consensus_8912#2 length = 182 sequences # 1

consensusID : consensus_8912#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 952
fasta sequence

                              [GGTTATGTATTTTACAAGTAAACTATACAAAGCACTAACTTACACATACAGAGAGAAAGATCGAAATGCAAGTTGAAACGATGACAGAATGAAACTGGCAAATATATATATGTATATATATATTTGCAGCCCTTGATTTGTTCGATCCTTTTTTTACTCTGCCGAAGTCGACTAATATCTATACATCAG-TACTAG-TTACAT-CCTACATCCACCATCCCTAATCACCTTCAATGTTGTTAATATCAAGTAAATATCTCCCCTCTTATGACCGTGTAGTTCCTTTTCTATTCTACTACTTTATATTCAATAGAAGGAAACTGGGTACACAATCATCCTTCGTAGGTAGGTGAACGTGTGTGTGTATTTTGTATCGGGTTTTGATATTTTACTTTTGTAGAGATTAGTCAATGAGTTTCCTAATAAAACACTCCATAAATATATTTTATGATATTGTTTATTTCCTTCAACATGTACCGCATCTGATCGTAGCTTCCAATTAATTTGATGATACATCATTTTTCTACTTTGTCCCATTTTGTGTTTTCTGTCTCATCTTTTGACTACACTAAAACTACAATTACTGCTGTTCTCTTGCTGATGAATCAAAATTACAAATGAGTACTTTTTTAAAGAAAATTTGTACTCATCTGTTTACTCTGTTTTTAGTAAATGAGACATTTATCAACGGTAATATGGTTGGTGTTTTTTTGTCTACTTTTCATATACACAGAGATGATGATTTACCTAACTGTTTTACTCTCTCACACATAG-TCTTTTTCCCTCTATTCCAAAAATCGTTTTAAAGAAAATTATTGTTACAATTACCGTTTGGATTTACCGGGTGTTTATCCTTGTCTTCATAACCACCTCCTTGTTGTCGTCCACCTTGAACTCATTTT-ATGTTATCCTTTTAATTA-CAGTTTACCTTCGGTTGAATTTTAATACTAAAAAT]

[-] EMBL CD069415             [GGTTATGTATTTTACAAGTAAACTATACAAAGCACTAACTTACACATACAGAGAGAAAGATCGAAATGCAAGTTGAAACGATGACAGAATGAAACTGGCAAATATATATATGTATATATATATTTGCAGCCCTTGATTTGTTCGATCCTTTTTTTACTCTGCCGAAGTCGACTAATATCTATACATCAG TACTAG TTACAT CCTACATCCACCATCCCTAATCACCTTCAATGTTGTTAATATCAAGTAAATATCTCCCCTCTTATGACCGTGTAGTTCCTTTTCTATTCTACTACTTTATATTCAATAGAAGGAAACTGGGTACACAATCATCCTTCGTAGGTAGGTGAACGTGTGTGTGTATTTTGTATCGGGTTTTGATATTTTACTTTTGTAGAGATTAGTCAATGAGTTTCCTAATAAAACACTCCATAAATATATTTTATGATATTGTTTATTTCCTTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD079040             [                                                      GAAAGATCGAAATGCAAGTTGAAACGATGACAGAATGAAACTGGCAAATATATATATGTATATATATATTTGCAGCCCTTGATTTGTTCGATCCTTTTTTTACTCTGCCGAAGTCGACTAATATCTATACATCAG TACTAG TTACAT CCTACATCCACCATCCCTAATCACCTTCAATGTTGTTAATATCAAGTAAATATCTCCCCTCTTATGACCGTGTAGTTCCTTTTCTATTCTACTACTTTATATTCAATAGAAGGAAACTGGGTACACAATCATCCTTCGTAGGTAGGTGAACGTGTGTGTGTATTTTGTATCGGGTTTTGATATTTTACTTTTGTAGAGATTAGTCAATGAGTTTCCTAATAAAACACTCCATAAATATATTTTATGATATTGTTTATTTCCTTCAACATGTACCGCATCTGATCGTAGCTTCCAATTAATTTGATGATACATCATTTTTCTACTTTGTCCCATTTTGTGTTTTCTGTCTCATCTTTTGACTACACTAAAACTACAATTACTGCTGTTCTCTTGCTGATGAATCANAATTACAAATGAGTACTTTTTTAAAGAAAATTTGTACTCATCTGTTTACTCTGTTTTT                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD081163             [                                                                                                                                                                              ATATCTATACATCAGCTACTAGTTTACATAACTACATCCACCATCCCTAATCACCTTCAATGTTGATAATATCAAGGAAATATCTCCCCTCTTATGACCGGGTAGTTCCTTTTCTATTCTACTACTTTATATTCAATAGAAGGAAACTGGGTACACAATCATCCTTCGTAGGTAGGTGAACGCGTGTGTGTATTTTGTATCGGGTTTTGATATTTTACTTTTGTAGAGATTACTCAATGAGTTTCCTAATAAAACACTGCATAAATATATTTTATGATATTGCTTATTTCCTTC GCATGTACCGAATCTGATCGTAGCTACCAATTAATTTGATGATACATCATTTTTCTACTTTGTCCCATTTTGTGTTTTCTGTCTCATGTTTTGACTACACTAAAACTACAATTACTGCTGTTCTCTTGCTGATGAATCAAAATTACAAATGAGTACTTTTTTAAAGAAAATATGGACTCATCTGTTTACTCTGTTTTTAGCAAATGAGACATTTATCAACGGTCATATGGATGGTGTGTTTTTGTCTACTTTGCATATACACAGAGATGATGATTTACCTAACTGTTTGACTCTCTCACACATAGATCTTTTTCCCTCTATTCCAAAGATCGTTTTAAAGAAAATTATTGGTACAATTACCGTCTGGATTTACCGGGTGTTTATCCTTGTCTTCATAGCCACCTCCTTGTTGTCGTCCACCTTGAACTCATTGT ATGTTATCCTTTTAATTACCAGTTGACGTTCGGTTGAATTNGACTACTACAAAT]
[-] EMBL CD074980             [                                                                                                                                                                                                                                                                                                                                         CAATCATCCTTCGTAGGTAGGAGAACGTGTGTGTGTATTTTGTATCGGGTTTTGATATTTTACTTTCGTAGAGATTAGTCAATGAGTTTCCTAATAAAACACTCCATAAATATATTTTATGATATTGTTTATTTCCTTCAACATGTACCGCATCTGATCGTAGCTTCCAATTAATTTGATGATACATCATTTTTGTACTTTGTCCCATTTTGTGTTTTCTGTCTCATCTTTTGACTACACTAAAACTACAATTACTGCTGTTCTCTTGCTGATGAATCAAAATTACAAATGAGTTCTTTTTTAAAGAAAATTTGTACTCATCTGTTTACTCTGTTTTTAGTAAATGAGACATTTATCAACGGTAATATGGTTGGTGTTTTTTTGTTTACTTTTCATATACACAGAGATGATGATTTACCTAACTGTTTTACTCTCTCACACATAG TCTTTTTCCCTATATTCCAAAAATCGTTTTAAAGAAAATTATTGTTACAATTTCCGTTTGGATTTTCCGGGTGTTTATCCTTGTCTTCATAACCACCTCCTTGTTGTCGTCCACCTTGAACTCATTTTGAAATT TCCTTTTAATTA CAGTTTACCTTTGTTCGAATTTTAATATTAAAAA ]
[-] EMBL CD074703             [                                                                                                                                                                                                                                                                                                                                             CATCCTTCGTAGGTAGGTGAACGTGTGTGTGTATTTTGTATCGGGTTTTGATATTTTAC TTTGTAGAGATTAGTCAATGAGTTTCCTAATAAAACACTCCATAAATATATTTTATGATATTGTTTATTTCCTTCAACATGTACCGCATCTGATCGTAGCTTCCAATTAATTTGATGATACATCATTTTTCTACTTTGTCCCATTTTGTGTTTTCTGTCTCATCTTTTGACTACACTAAAACTACAATTACTGCTGTTCTCTTGCTGATGAATCAAAATTACAAATGAGTACTTTTTTAAAGAAAATTTGTACTCATCTGTTTACTCTGTTTTTAGTAAATGAGACATTTATCAACGGTAATATGGTTGGTGTTTTTTTGTCTACTTTTCATATACACAGAGATGATGATTTACCTAACTGTTTTACTCTCTCACACATAG TCTTTTTCCCTCTATTCCAAAAATCGTTTTAAAGAAAATTATTGTTACAATTACCGTTTGGATTTACCGGGTGTTTATCCTTGTCTTCATAACCACCTCCTTGTTGTCGTCCACCTTGAACTCATTTT ATGTTTTCCTTTTAATTA CAGTTTACCTTCGGTTGAATCTTAATAATAAAAA ]




>consensus_8912#0
GGTTATGTATTTTACAAGTAAACTATACAAAGCACTAACTTACACATACAGAGAGAAAGA
TCGAAATGCAAGTTGAAACGATGACAGAATGAAACTGGCAAATATATATATGTATATATA
TATTTGCAGCCCTTGATTTGTTCGATCCTTTTTTTACTCTGCCGAAGTCGACTAATATCT
ATACATCAGTACTAGTTACATCCTACATCCACCATCCCTAATCACCTTCAATGTTGTTAA
TATCAAGTAAATATCTCCCCTCTTATGACCGTGTAGTTCCTTTTCTATTCTACTACTTTA
TATTCAATAGAAGGAAACTGGGTACACAATCATCCTTCGTAGGTAGGTGAACGTGTGTGT
GTATTTTGTATCGGGTTTTGATATTTTACTTTTGTAGAGATTAGTCAATGAGTTTCCTAA
TAAAACACTCCATAAATATATTTTATGATATTGTTTATTTCCTTCAACATGTACCGCATC
TGATCGTAGCTTCCAATTAATTTGATGATACATCATTTTTCTACTTTGTCCCATTTTGTG
TTTTCTGTCTCATCTTTTGACTACACTAAAACTACAATTACTGCTGTTCTCTTGCTGATG
AATCAAAATTACAAATGAGTACTTTTTTAAAGAAAATTTGTACTCATCTGTTTACTCTGT
TTTTAGTAAATGAGACATTTATCAACGGTAATATGGTTGGTGTTTTTTTGTCTACTTTTC
ATATACACAGAGATGATGATTTACCTAACTGTTTTACTCTCTCACACATAGTCTTTTTCC
CTCTATTCCAAAAATCGTTTTAAAGAAAATTATTGTTACAATTACCGTTTGGATTTACCG
GGTGTTTATCCTTGTCTTCATAACCACCTCCTTGTTGTCGTCCACCTTGAACTCATTTTA
TGTTATCCTTTTAATTACAGTTTACCTTCGGTTGAATTTTAATACTAAAAAT

consensusID : consensus_8912#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 353
fasta sequence

                              [TCAAAATTACAAATGAGTACTTTTTTAAAGAAAATTTGCATTCATATGTTTACTATGTTTTTAGTAAATGAAACATTTATCACCGGTAATATGGATGGTGTTTTTTTGTTTGCTTTTCGATATACACAGAGATAATGATTTACATACCTGTTTCACTCTCTCACACATAGTGATTTTTCCCTATATTCCAATAAATCGTTTTAAAGAAAATTATTGTCACAATAACCGTTTGGATTAAACGGGTGTATATCCTTGTCTTCATAACCACATCAATGTTGTCGTCCTCCCTGAACTCATTGTTATGTTTTCCTTTTAATAACAGATTACCTTCGGTTGAATATTAATAATAAAAA]

[-] EMBL CD074849             [TCAAAATTACAAATGAGTACTTTTTTAAAGAAAATTTGCATTCATATGTTTACTATGTTTTTAGTAAATGAAACATTTATCACCGGTAATATGGATGGTGTTTTTTTGTTTGCTTTTCGATATACACAGAGATAATGATTTACATACCTGTTTCACTCTCTCACACATAGTGATTTTTCCCTATATTCCAATAAATCGTTTTAAAGAAAATTATTGTCACAATAACCGTTTGGATTAAACGGGTGTATATCCTTGTCTTCATAACCACATCAATGTTGTCGTCCTCCCTGAACTCATTGTTATGTTTTCCTTTTAATAACAGATTACCTTCGGTTGAATATTAATAATAAAAA]




>consensus_8912#1
TCAAAATTACAAATGAGTACTTTTTTAAAGAAAATTTGCATTCATATGTTTACTATGTTT
TTAGTAAATGAAACATTTATCACCGGTAATATGGATGGTGTTTTTTTGTTTGCTTTTCGA
TATACACAGAGATAATGATTTACATACCTGTTTCACTCTCTCACACATAGTGATTTTTCC
CTATATTCCAATAAATCGTTTTAAAGAAAATTATTGTCACAATAACCGTTTGGATTAAAC
GGGTGTATATCCTTGTCTTCATAACCACATCAATGTTGTCGTCCTCCCTGAACTCATTGT
TATGTTTTCCTTTTAATAACAGATTACCTTCGGTTGAATATTAATAATAAAAA

consensusID : consensus_8912#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 182
fasta sequence

                              [GTAGGTAGGTGAACGTGTGTGTGTATTTTGTATCGGGTTTTGATATTTTACTTTTGTAGAGGATTAGTCATTGAGTTTCCTATTAAACCAACCTTCCATAAATATCATTCTACGATATTGTTTTTTCCTTCCACATGTACCGATTCTGTTGGTAGCTTCCCAATTAATTTGGTTGATCCAAT]

[+] EMBL AW330544             [GTAGGTAGGTGAACGTGTGTGTGTATTTTGTATCGGGTTTTGATATTTTACTTTTGTAGAGGATTAGTCATTGAGTTTCCTATTAAACCAACCTTCCATAAATATCATTCTACGATATTGTTTTTTCCTTCCACATGTACCGATTCTGTTGGTAGCTTCCCAATTAATTTGGTTGATCCAAT]




>consensus_8912#2
GTAGGTAGGTGAACGTGTGTGTGTATTTTGTATCGGGTTTTGATATTTTACTTTTGTAGA
GGATTAGTCATTGAGTTTCCTATTAAACCAACCTTCCATAAATATCATTCTACGATATTG
TTTTTTCCTTCCACATGTACCGATTCTGTTGGTAGCTTCCCAATTAATTTGGTTGATCCA
AT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8912#0      GGTTATGTATTTTACAAGTAAACTATACAAAGCACTAACTTACACATACAGAGAGAAAGA 60
consensus_8912#1      ------------------------------------------------------------
consensus_8912#2      ------------------------------------------------------------
                                                                                  

consensus_8912#0      TCGAAATGCAAGTTGAAACGATGACAGAATGAAACTGGCAAATATATATATGTATATATA 120
consensus_8912#1      ------------------------------------------------------------
consensus_8912#2      ------------------------------------------------------------
                                                                                  

consensus_8912#0      TATTTGCAGCCCTTGATTTGTTCGATCCTTTTTTTACTCTGCCGAAGTCGACTAATATCT 180
consensus_8912#1      ------------------------------------------------------------
consensus_8912#2      ------------------------------------------------------------
                                                                                  

consensus_8912#0      ATACATCAGTACTAGTTACATCCTACATCCACCATCCCTAATCACCTTCAATGTTGTTAA 240
consensus_8912#1      ------------------------------------------------------------
consensus_8912#2      ------------------------------------------------------------
                                                                                  

consensus_8912#0      TATCAAGTAAATATCTCCCCTCTTATGACCGTGTAGTTCCTTTTCTATTCTACTACTTTA 300
consensus_8912#1      ------------------------------------------------------------
consensus_8912#2      ------------------------------------------------------------
                                                                                  

consensus_8912#0      TATTCAATAGAAGGAAACTGGGTACACAATCATCCTTCGTAGGTAGGTGAACGTGTGTGT 360
consensus_8912#1      ------------------------------------------------------------
consensus_8912#2      ------------------------------------------------------------
                                                                                  

consensus_8912#0      GTATTTTGTATCGGGTTTTGATATTTTACTTTTGTAGAGATTAGTCAATGAGTTTCCTAA 420
consensus_8912#1      ------------------------------------------------------------
consensus_8912#2      ------------------------------------------------------------
                                                                                  

consensus_8912#0      TAAAACACTCCATAAATATATTTTATGATATTGTTTATTTCCTTCAACATGTACCGCATC 480
consensus_8912#1      ------------------------------------------------------------
consensus_8912#2      ------------------------------------------------------------
                                                                                  

consensus_8912#0      TGATCGTAGCTTCCAATTAATTTGATGATACATCATTTTTCTACTTTGTCCCATTTTGTG 540
consensus_8912#1      ------------------------------------------------------------
consensus_8912#2      ------------------------------------------------------------
                                                                                  

consensus_8912#0      TTTTCTGTCTCATCTTTTGACTACACTAAAACTACAATTACTGCTGTTCTCTTGCTGATG 600
consensus_8912#1      ------------------------------------------------------------
consensus_8912#2      ------------------------------------------------------------
                                                                                  

consensus_8912#0      AATCAAAATTACAAATGAGTACTTTTTTAAAGAAAATTTGTACTCATCTGTTTACTCTGT 660
consensus_8912#1      --TCAAAATTACAAATGAGTACTTTTTTAAAGAAAATTTGCATTCATATGTTTACTATGT 58
consensus_8912#2      ------------------------------------------------------------
                                                                                  

consensus_8912#0      TTTTAGTAAATGAGACATTTATCAACGGTAATATGGTTGGTGTTTTTTTGTCTACTTTTC 720
consensus_8912#1      TTTTAGTAAATGAAACATTTATCACCGGTAATATGGATGGTGTTTTTTTGTTTGCTTTTC 118
consensus_8912#2      -GTAGGTAGGTGA-ACGTGTGTGT---GTATTTTGTATCGGGTTTTGATATTTTACTTTT 55
                        *  ***  *** ** * * *     *** * **  * * *****  * * *   *** 

consensus_8912#0      -ATATACACAGAGATGATGATTTACCTAACTGTTTTACTCTCTCACACATAGTC-TTTTT 778
consensus_8912#1      GATATACACAGAGATAATGATTTACATACCTGTTTCACTCTCTCACACATAGTGATTTTT 178
consensus_8912#2      -GTAGAGGATTAGTCATTGAGTTTCCTA-TTAAACCAACCTTCCATAAATATCA-TTCTA 112
                        ** *     **    *** ** * **  *     *  **  ** * ***    ** * 

consensus_8912#0      CCCTCTATTCCAA-AAATCGTTTTAAAGAAAATTATTGTTACAATTACCGTTTGGATTTA 837
consensus_8912#1      CCCTATATTCCAATAAATCGTTTTAAAGAAAATTATTGTCACAATAACCGTTTGGATTAA 238
consensus_8912#2      CGATATTGTTTTT----TCCTTCCACATGTACCGATTCTGTTGGTAGCT-TCCCAATTAA 167
                      *  * *  *        ** **  * *   *   *** *     *  *  *    *** *

consensus_8912#0      CCGGGTGTTTATCCTTGTCTTCATAACCACCTCCTTGTTGTCGTCCACCTTGAACTCATT 897
consensus_8912#1      ACGGGTGTATATCCTTGTCTTCATAACCACATCAATGTTGTCGTCCTCCCTGAACTCATT 298
consensus_8912#2      TTTGGTTGATCCAAT--------------------------------------------- 182
                         ***   *    *                                             

consensus_8912#0      -TTATGTTATCCTTTTAATTACAGTTTACCTTCGGTTGAATTTTAATACTAAAAAT 952
consensus_8912#1      GTTATGTTTTCCTTTTAATAACAGATTACCTTCGGTTGAATATTAATAATAAAAA- 353
consensus_8912#2      --------------------------------------------------------