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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8917#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 902 fasta sequence
[GCCAAGATTTGGCACGAGGGGCCGATGTCATAAATATCGGTCGAATTATTTGAGACATCGTTGCCTGTCGGGTCCAACAGTTGCTATGCTACTTCCAACAGCGAGTCACGAGTCGACATCTCTTTCACGCACTGCTGTCCACTCCTCAGTATTTGAAAACTGTGGTCTCGGAGTAATAGATCAATCTATTCCATTGTCTCACTTAATAATTCCACATTCTCCAGGACCGAAGATGACGTCAAACTTATCACATCTCAATATGTGTCCTAAGCCGCTTTCTCGTATTTCGAATCCTTTTTTTGAACCTCACTGTTTTTCCAGTACTGAATTTCACTCTACTCATGCATCTCATTCGCGTTTCGCGTGTAGCTAGAATTATTTTAAGTGCTGGCGTACTTTTAACAACCCAACGCATTTCTGATGAAATTTGCCCAGTCAATTTTATGGTCTCGATCCCTGTTTATCTCGTTCCTTGCATTTAACTACTAGATGGCACATTATTACAAATCCTTTGTCCTTCACCACATAAATCTCAGTAATTTACCACCTAGTTATGCCAAGTTTTCATTCTTTCATAGTAATATTATGTATNTGAAATCCTCTAAATTGTAGGATTTTTATCATTCGTACCAACTTATGTTTCGTTCATTCCACACTAACTTTGGAACTGCTTTTCTTCTTTTGTCAGCAACTATTTATACACTGGCGTTTACGTCACGTCAGTGATTGTTCGAATAACTTTCCTTGATTAGGTATTGGAACTAATTTCGTTTTATTCCAGTTCTTTTATACATACGCTTTCTATAATTATGCTTTTTGTTTATATTTATATATGTACTTCGTATAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACTGCGTA]
[+] EMBL CD079501 [GCCAAGATTTGGCACGAGGGGCCGATGTCATAAATATCGGTCGAATTATTTGAGACATCGTTGCCTGTCGGGTCCAACAGTTGCTATGCTACTTCCAACAGCGAGTCACGAGTCGACATCTCTTTCACGCACTGCTGTCCACTCCTCAGTATTTGAAAACTGTGGTCTCGGAGTAATAGATCAATCTATTCCATTGTCTCACTTAATAATTCCACATTCTCCAGGACCGAAGATGACGTCAAACTTATCACATCTCAATATGTGTCCTAAGCCGCTTTCTCGTATTTCGAATCCTTTTTTTGAACCTCACTGTTTTTCCAGTACTGAATTTCACTCTACTCATGCATCTCATTCGCGTTTCGCGTGTAGCTAGAATTATTTTAAGTGCTGGCGTACTTTTAACAACCCAACGCATTTCTGATGAAATTTGCCCAGTCAATTTTATGGTCTCGATCCCTGTTTATCTCGTTCCTTGCATTTAACTACTAGATGGCACATTATTACAAATCCTTTGTCCTTCACCACATAAATCTCAGTAATTTACCACCTAGTTATGCCAAGTTTTCATTCTTTCATAGTAATATTATGTATNTGAAATCCTCTAAATTGTAGGATTTTTATCATTCGTACCAACTTATGTTTCGTTCATTCCA ]
[-] EMBL AI977470 [ TGCCCAGTCAATTTTATGGTCTCGATCCCTGTTTATCTCGTTCCTTGCATTTAACTACTAGATGGCACATTATTACAAATCCTTTGTCCTTCACCACATAAATCTCAGTAATTTACCACCTAGTTATGCCAAGTTTTCATTCTTTCATAGTAATATTATGTATTTGAAATCCTCTAAATTGTAGGATTTTTATCATTCGTACCAACTTATGTTTCGTTCATTCCACACTAACTTTGGAACTGCTTTTCTTCTTTTGTCAGCAACTATTTATACACTGGCGTTTACGTCACGTCAGTGATTGTTCGAATAACTTTCCTTGATTAGGTATTGGAACTAATTTCGTTTTATTCCAGTTCTTTTATACATACGCTTTCTATAATTATGCTTTTTGTTTATATTTATATATGTACTTCGTATAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACTGCGTA]
consensusID : consensus_8917#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 630 fasta sequence
[TTCCATCCCTGTTTGGTGAGACAGGAATGTCGCATTAATTAGTCTGTCAATTTCCAGACATCGTTTTCTTGCATCCTTTGCTAATTCTCCGGGTGCAGTTCGCTATCTCGAACACTGTTTTTCTACCCGTAATTCTTCGGTTTATCATATTTTTTCATGGTAAACAATTATGTGATGGAGACTTCTCATAAAGTGTCACGAAAACGTTAATACAATCATTTATTTATCTTTGTAGGTGCTTGTCAGTTGGATCTCAGTCGATGTCATAAATATCGGTCGAATTATTTGAGACATCGTTGCCTGTCGGGTCCAACAGTTGCTATGCTACTTCCAACAGCGAGTCACGAGTCGACATCTCTTTCACGCACTGCTGTCCACTCCTCAGTATTTGAAAACTGTGGTCTCGGAGTAATAGATCAATCTATTCCATTGTCTCACTTAATAATTCCACATTCTCCAGGACCGAAGATGACGTCAAACTTATCACATCTCAATATGTGTCCTAAGCCGCTTTCTCGTATTTCGAATCCTTTTTTTGAACCTCACTGTTTTTCCAGTACTGAATTTCACTCTACTCATGCATCTCATTCGCGTTTCGCGTGTAGCTAGAATTATTTTAAGTGCTGGCGT]
[+] EMBL CD133198 [TTCCATCCCTGTTTGGTGAGACAGGAATGTCGCATTAATTAGTCTGTCAATTTCCAGACATCGTTTTCTTGCATCCTTTGCTAATTCTCCGGGTGCAGTTCGCTATCTCGAACACTGTTTTTCTACCCGTAATTCTTCGGTTTATCATATTTTTTCATGGTAAACAATTATGTGATGGAGACTTCTCATAAAGTGTCACGAAAACGTTAATACAATCATTTATTTATCTTTGTAGGTGCTTGTCAGTTGGATCTCAGTCGATGTCATAAATATCGGTCGAATTATTTGAGACATCGTTGCCTGTCGGGTCCAACAGTTGCTATGCTACTTCCAACAGCGAGTCACGAGTCGACATCTCTTTCACGCACTGCTGTCCACTCCTCAGTATTTGAAAACTGTGGTCTCGGAGTAATAGATCAATCTATTCCATTGTCTCACTTAATAAT ]
[+] EMBL CD168905 [ TGTGATGGAGACTTCCCATAAAGTGTCACGAAAACGTTAATACAATCATTTATTTATCTTTGTAGGTGCTTGTCAGTTGGATCTCAGTCGATGTCATAAATATCGGTCGAATTATTTGAGACATCGTTGCCTGTCGGGTCCAACAGTTGCTATGCTACTTCCAACAGCGAGTCACGAGTCGACATCTCTTTCACGCACTGCTGTCCACTCCTCAGTATTTGAAAACTGTGGTCTCGGAGTAATAGATCAATCTATTCCATTGTCTCACTTAATAATTCCACATTCTCCAGGACCGAAGATGACGTCAAACTTATCACATCTCAATATGTGTCCTAAGCCGCTTTCTCGTATTTCGAATCCTTTTTTTGAACCTCACTGTTTTTCCAGTACTGAATTTCACTCTACTCATGCATCTCATTCGCGTTTCGCGTGTAGCTAGAATTATTTTAAGTGCTGGCGT]
[+] EMBL CD137951 [ ATAAATATCGGTCGAATTATTTGAGACATCGTTGCCTGTCGGGTCCAACAGTTGCTATGCTACTTCCAACAGCGAGTCACGAGTCGACATCTCTTTCACGCACTGCTGTCCACTCCTCAGTATTTGAAAACTGTGGTCTCGGAGTAATAGATCAATCTATTCCATTGTCTCACTTAATAATTCCACATTCTCCAGGACCGAAGATGACGTCAAACTTATCACACCTCA ]
[+] EMBL CD184505 [ TTGCCTGTCGGGTCCAACAGTTGCTATGCTACTTCCAACAGCGAGTCACGAGTCGACATCTCTTTCACGCACTGCTGTCCACTCCTCAGTATTTGAAAACTGTGGTCTCGGAGTAATAGATCAATCTATTCCATTGTCTCACTTAATAATTCCACATTCTCCAGGACCGAAGATGACGTCAAACTTATCACATCTCAA ]
consensusID : consensus_8917#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 385 fasta sequence
[AAAACCCCTAAATTGTAGGATTTTTATCATTCGTACCCAACTTATGNTTCGTTCATTCCACACTAACTTTGGAACTGCTTTTCTTTTTTGTCAGCAACTATTCAGCACACTGGCGTTTACGTCACGTCAGTGATTGTTCGAATAACTTTCCTTGATTAGGTATTGGAACTAATTTCGTTTTATTCCAGTTCTTTTATACATACGCTTTCTATAATTATGCTTTTTGTTTATATTTATTTATGTACTTCGTATATATTGTGTTTACAGTTTTTTTTACGGATCTTTATGCTACTTATTGCTTTTAAAATTATCTATTTACTTTCTGGTCTTACTCGATGACGACATTTCATTCTAATTACTAAGCCAATTACTATAAAGTCCTTGG]
[-] EMBL AA999566 [AAAACCCCTAAATTGTAGGATTTTTATCATTCGTACCCAACTTATGNTTCGTTCATTCCACACTAACTTTGGAACTGCTTTTCTTTTTTGTCAGCAACTATTCAGCACACTGGCGTTTACGTCACGTCAGTGATTGTTCGAATAACTTTCCTTGATTAGGTATTGGAACTAATTTCGTTTTATTCCAGTTCTTTTATACATACGCTTTCTATAATTATGCTTTTTGTTTATATTTATTTATGTACTTCGTATATATTGTGTTTACAGTTTTTTTTACGGATCTTTATGCTACTTATTGCTTTTAAAATTATCTATTTACTTTCTGGTCTTACTCGATGACGACATTTCATTCTAATTACTAAGCCAATTACTATAAAGTCCTTGG]
consensusID : consensus_8917#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 311 fasta sequence
[CTCCTGCATTTATTGGCAAACACAATATAGTTCCATGCACTGTGACTACCAATTCTGGCAATTCTACTCTTAAAATGTATCCTTACTCAGTGTACTCATGTGCTTGTCAGTTGGATCTCAGTCGATGTCATAAATATCGGTCGAATTATTTGAGACATCGTTGCCTGTCGGGTCCAACAGTTGCTATGCTACTTCCAACAGCGAGTCACGAGTCGACATCTCTTTCACGCACTGCTGTCCACTCCTCAGTATTTGAAAACTGTGGTCTCGGAGTAATAGATCAATCTATTCCATTGTCTCACTTAATAATT]
[-] EMBL CD183248 [CTCCTGCATTTATTGGCAAACACAATATAGTTCCATGCACTGTGACTACCAATTCTGGCAATTCTACTCTTAAAATGTATCCTTACTCAGTGTACTCATGTGCTTGTCAGTTGGATCTCAGTCGATGTCATAAATATCGGTCGAATTATTTGAGACATCGTTGCCTGTCGGGTCCAACAGTTGCTATGCTACTTCCAACAGCGAGTCACGAGTCGACATCTCTTTCACGCACTGCTGTCCACTCCTCAGTATTTGAAAACTGTGGTCTCGGAGTAATAGATCAATCTATTCCATTGTCTCACTTAATAATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8917#1 TTCCATCCCTGTTTGGTGAGACAGGAATGTCGCATTAATTAGTCTGTCAATTTCCAGACA 60
consensus_8917#3 ------------------------------------------------------------
consensus_8917#0 ------------------------------------------------------------
consensus_8917#2 ------------------------------------------------------------
consensus_8917#1 TCGTTTTCTTGCATCCTTTGCTAATTCTCCGGGTGCAGTTCGCTATCTCGAACACTGTTT 120
consensus_8917#3 ------------------------------------------------------------
consensus_8917#0 ------------------------------------------------------------
consensus_8917#2 ----------------------------------------------AAAACCCCTAAATT 14
consensus_8917#1 TTCTACCCGTAATTCTTCG-GTTTATCATATTTTTTCATGGTAAACAATTATGTGATGGA 179
consensus_8917#3 ---CTCCTGCATTTATTGGCAAACACAATATAGTTCCATG--------CACTGTGACTAC 49
consensus_8917#0 ------------------------------------------------------------
consensus_8917#2 GTAGGATTTTTATCATTCGTACCCAACTTATGNTTCGTTCATT--CCACACTAACTTTGG 72
consensus_8917#1 GACTTCTCATAAAG-TGTCACGAAAACGTTAATACAATCATTTATTTATCTTTGTAGGTG 238
consensus_8917#3 CAATTCTGGCAATTCTACTCTTAAAATGT-------ATCCTTACTCAGTGTACTCATGTG 102
consensus_8917#0 -----------------------------------------------------GCCAAGA 7
consensus_8917#2 AACTGCTTTTCTTTTTTGTCAGCAACTATTCAGCACACTGGCGTTTACGTCACGTCAGTG 132
consensus_8917#1 CTTGTCAGTTGGATCTCAGTCGAT--GTCATAAATATCGGT--CGAATTATTTGAGACAT 294
consensus_8917#3 CTTGTCAGTTGGATCTCAGTCGAT--GTCATAAATATCGGT--CGAATTATTTGAGACAT 158
consensus_8917#0 TTTGGCACGAGGG-----GCCGAT--GTCATAAATATCGGT--CGAATTATTTGAGACAT 58
consensus_8917#2 ATTGTTCGAATAACTTTCCTTGATTAGGTATTGGAACTAATTTCGTTTTATTCCAGTTCT 192
*** *** * ** * * ** ***** ** *
consensus_8917#1 CGTTGCCTGTCGGGTCCAACAGTTGCTATGCTACTT-CCAACAGCGAGTCACG-AGTCGA 352
consensus_8917#3 CGTTGCCTGTCGGGTCCAACAGTTGCTATGCTACTT-CCAACAGCGAGTCACG-AGTCGA 216
consensus_8917#0 CGTTGCCTGTCGGGTCCAACAGTTGCTATGCTACTT-CCAACAGCGAGTCACG-AGTCGA 116
consensus_8917#2 TTTATACATACGCTTTCTATAATT---ATGCTTTTTGTTTATATTTATTTATGTACTTCG 249
* * ** * * * * ** ***** ** * * * * * * * *
consensus_8917#1 CATCTCTTTCACGCACTGCTGTCCACTCCTCAGTATTTGAAAACTGTGGTCTCGGAGTAA 412
consensus_8917#3 CATCTCTTTCACGCACTGCTGTCCACTCCTCAGTATTTGAAAACTGTGGTCTCGGAGTAA 276
consensus_8917#0 CATCTCTTTCACGCACTGCTGTCCACTCCTCAGTATTTGAAAACTGTGGTCTCGGAGTAA 176
consensus_8917#2 TATATATTGTGTTTACAGTTTTTTTTACGGATCTTTATGCTACTTATTGCTTTTAA--AA 307
** * ** ** * * * * * * ** * * * * * * **
consensus_8917#1 TAGATCAATCTATTCCATTGTCTCACTTAATAATTCCACATTCTCCAGGACCGAAGATGA 472
consensus_8917#3 TAGATCAATCTATTCCATTGTCTCACTTAATAATT------------------------- 311
consensus_8917#0 TAGATCAATCTATTCCATTGTCTCACTTAATAATTCCACATTCTCCAGGACCGAAGATGA 236
consensus_8917#2 TT-ATCTATTTACTTTCTGGTCTTACTCGATGACGACATTTCATTCTAATTACTAAGCCA 366
* *** ** ** * * **** *** ** *
consensus_8917#1 CGTCAAACTTATCACATCTCAATATGTGTCCTAAGCCGCTTTCTCGTATTTCGAATCCTT 532
consensus_8917#3 ------------------------------------------------------------
consensus_8917#0 CGTCAAACTTATCACATCTCAATATGTGTCCTAAGCCGCTTTCTCGTATTTCGAATCCTT 296
consensus_8917#2 ATTACTATAAAGTCCTTGG----------------------------------------- 385
consensus_8917#1 TTTTTGAACCTCACTGTTTTTCCAGTACTGAATTTCACTCTACTCATGCATCTCATTCGC 592
consensus_8917#3 ------------------------------------------------------------
consensus_8917#0 TTTTTGAACCTCACTGTTTTTCCAGTACTGAATTTCACTCTACTCATGCATCTCATTCGC 356
consensus_8917#2 ------------------------------------------------------------
consensus_8917#1 GTTTCGCGTGTAGCTAGAATTATTTTAAGTGCTGGCGT---------------------- 630
consensus_8917#3 ------------------------------------------------------------
consensus_8917#0 GTTTCGCGTGTAGCTAGAATTATTTTAAGTGCTGGCGTACTTTTAACAACCCAACGCATT 416
consensus_8917#2 ------------------------------------------------------------
consensus_8917#1 ------------------------------------------------------------
consensus_8917#3 ------------------------------------------------------------
consensus_8917#0 TCTGATGAAATTTGCCCAGTCAATTTTATGGTCTCGATCCCTGTTTATCTCGTTCCTTGC 476
consensus_8917#2 ------------------------------------------------------------
consensus_8917#1 ------------------------------------------------------------
consensus_8917#3 ------------------------------------------------------------
consensus_8917#0 ATTTAACTACTAGATGGCACATTATTACAAATCCTTTGTCCTTCACCACATAAATCTCAG 536
consensus_8917#2 ------------------------------------------------------------
consensus_8917#1 ------------------------------------------------------------
consensus_8917#3 ------------------------------------------------------------
consensus_8917#0 TAATTTACCACCTAGTTATGCCAAGTTTTCATTCTTTCATAGTAATATTATGTATNTGAA 596
consensus_8917#2 ------------------------------------------------------------
consensus_8917#1 ------------------------------------------------------------
consensus_8917#3 ------------------------------------------------------------
consensus_8917#0 ATCCTCTAAATTGTAGGATTTTTATCATTCGTACCAACTTATGTTTCGTTCATTCCACAC 656
consensus_8917#2 ------------------------------------------------------------
consensus_8917#1 ------------------------------------------------------------
consensus_8917#3 ------------------------------------------------------------
consensus_8917#0 TAACTTTGGAACTGCTTTTCTTCTTTTGTCAGCAACTATTTATACACTGGCGTTTACGTC 716
consensus_8917#2 ------------------------------------------------------------
consensus_8917#1 ------------------------------------------------------------
consensus_8917#3 ------------------------------------------------------------
consensus_8917#0 ACGTCAGTGATTGTTCGAATAACTTTCCTTGATTAGGTATTGGAACTAATTTCGTTTTAT 776
consensus_8917#2 ------------------------------------------------------------
consensus_8917#1 ------------------------------------------------------------
consensus_8917#3 ------------------------------------------------------------
consensus_8917#0 TCCAGTTCTTTTATACATACGCTTTCTATAATTATGCTTTTTGTTTATATTTATATATGT 836
consensus_8917#2 ------------------------------------------------------------
consensus_8917#1 ------------------------------------------------------------
consensus_8917#3 ------------------------------------------------------------
consensus_8917#0 ACTTCGTATAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTAC 896
consensus_8917#2 ------------------------------------------------------------
consensus_8917#1 ------
consensus_8917#3 ------
consensus_8917#0 TGCGTA 902
consensus_8917#2 ------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||