cluster # 8918

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Schistosoma mansoni
cluster # 8918 cluster # 8918 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8918#0 length = 947 sequences # 7

consensus_8918#1 length = 377 sequences # 1

consensusID : consensus_8918#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 947
fasta sequence

                              [CGACAACAACTACTACTACAAAAAAACGTAAACAAAATGGTTATGTTAAACA-ATTTCTACAACAAAATGGTATGAGAAAAAC-AAAAAAAAGTAGTCCATTAATATCAGTGAATGGTACTGGTGGAGGAATAGGTGAACAAAGATTTGATGCAAATTTTAAAGTATTATTACTTGGTAATTCTGGTGTAGGAAAAACATCAATAATTAGAGCA-----CTTGTTGGTGAAACATTTTATCAGACTACTATTTCAACAATTGGTATTGACTTGATTAAACGAATATTCACAGTTGAAAATCATCGTGTACAATTAGAAGTATGGGATACAGCAGGTCAAGAAC-AATATCACTCCATTGTATCATTACATTTTCGAGAGGCTAAA-TGTTTTATCATCGTTTATGACGTAACAGATATGGAATCATTTGAACAAATACGTAAATATTGGCTTAGATCCGTAGATGAGCATATGGATGAAGCAGTACCGGTGTTTTTCGTAGCTAATAAAATTGATATGATAAAAGATAAAAAAGTCTCGACAGAACAAGGTCAACAATTGACATCTCAACAAGCAGCTCATGGATTCTTTGAGACAAGTGCAAAAACCGGTAAAAATATACAAAATTTATTTCAAGCAGTTGCTGAATGCATGGTGTCTACATGGGGTGCTCCAAAACGTTGGTACGAAATAAATACTGAAGGTAATAATCATTTAGATCCATGGTCTAATTCGTATAATCATCGTTACAAGGATACAGTTCAATTAGATCAGAAAAAAGCTCATAATAAATTACGATGTTGTTTGACACATTAACTAACACGTATCATTTGAACAGTGATATCTTATTATTAACTATTCAAATTATACTACTTAAAATTGTATTAAGTAGTTGAATNTGTATCACATCANATCTTCAGCATCGTTTGATGTTAAACCTACTCACCAAGATAAANT]

[-] EMBL CD159852             [ GACAACAACTACTACTACAAAAAAACGTAAACAAAATGGTTATGTTAAACA ATTTCTACAACAAAATGGTATGAGAAAAAC AAAAAAAAGTAGTCCATTAATATCAGTGAATGGTACTGGTGGAGGAATAGGTGAACAAAGATTTGATGCAAATTTTAAAGTATTATTACTTGGTAATTCTGGTGTAGGAAAAACATCAATAATTAGAGCA     CTTGTTGGTGAAACATTTTATCAGACTACTATTTCAACAATTGGTATTGACTTGATTAAACGAATATTCACAGTTGAAAATCATCGTGTACAATTAGAAGTATGGGATACAGCAGGTCAAGAAC AATATCACTCCATTGTATCATTACATTTTCGAGAGGCTAAA TGTTTTATCATCGTTTATGACGTAACAGATATGGAATCATTTGAACAAATACGTAAATATTGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD171422             [caACAACAACTACTACTACAAAATAACATAAACAAAATGGTTATGTTAAACATATTTCTACAACAAAATGGTATGAGAAAAACAAAAAAAAAGTAGTCCATTAATATCAGTGAATGGTACTGGTGGAGGAATAAGTGAACAAAGATTTGATGCAAATTTTAAAGTATTATTACTTGGTAATTCTGGTGTAGGAAAAACATCAATAATTAGAGCA     CTTGTTGGTGAAACATTTTATCAGACTACTATTTCAACAATTGGTATTGACTTGATTAAACGAATATTCACAGTTGAAAATCATCGTGTACAATTAGAAGTATGGGATACAGCAGGTCAAGAACAAATATCACT CATTGTATCATTACATTTTCGAGAGGCTAAANTG TTTATCATCGTTTATGACGTAACAGATATGG ATCATTTGAAC AATACGTAAATATg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CD159896             [                                                AACA ATTTGTACAACAAAATGGTATGAGAAAAAC AAAAAAAAGTAGTCCATTAATATCAGTGAATGGTACTGGTGGAGGAATAGGTGAACAAAGATTTGATGCAAATTTTAAAGTATTATTACTTGGTAATTCTGGTGTAGGAAAAACATCAATAATTAGAGCA     CTTGTTGGTGAAACATTTTATCAGACTACTATTTCAACAATTGGTATTGACTTGATTAAACGGATATTCACAGTTGAAAATCATCGTGTACAATTAGAAGTATGGGATACAGCAGGTCAAGAAC AATATCACTCCATTGTATCATTACATTTTCGAGAGGCTAAA TGTTTTATCATCGTTTATGACGTAACAGATATGGAATCATTTGAACAAATACGTAAATATTGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CD159930             [                                                                AAAATGGTTTGAGAAAAAC AAAAAAAAGTAGTCCATTAATATCAGTGAATGGTACTGGTGGAGGAATAGGTGAACAAAGATTTGATGCAAATTTTAAAGTATTATTACTTGGTAATTCTGGTGTAGGAAAAACATCAATAATTAGAGCA     CTTGTTGGTGAAACATTTTATCAGACTACTATTTCAACAATTGGTATTGACTTGATCAAACGAATATTCACAGTTGAAAATCATCGTGTACAATTAGAAGTATGGGATACAGCAGGTCAAGAAC AATATCACTCCATTGTATCATTACATTTTCGAGAGGCTAAA TGTTTTATCATCGTTTATGACGTAACAGATATGGAATCATTTGAACAAATACGTAAATATTGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CD159855             [                                                                                AAC AAAAAAAAGTAGTCCATTAATATCAGTGAATGGTACTGGTGGAGGAATAGGTGAACAAAGATTTGATGCAAATTTTAAAGTATTATTACTTGGTAATTCTGGTGTAGGAAAAACATCAATAATTAGAGCA     CTTGTTGGTGAAACATTTTATCAGACTACTATTTCAACAATTGGTATTGACTTGATTAAACGAATATTCACAGTTGAAAATCATCGTGTACAATTAGAAGTATGGGATACAGCAGGTCAAGAAC AATATCACTCCATTGTATCATTACATTTTCGAGAGGCTAAA TGTTTAATCATCGTTTATGACGTAACAGATATGGAATCATTTGAACAAATACGTAAATATTGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD079590             [                                                                                                                                                                                                        CAANAATTTG GCACGAGGCTCGTTGGTGAAACATTTTAT AGACTACTATTT AACAATTGGTATTGACTTGATTAAACGAATATTCACAGTTGAAAATCATCGTGTACAATTAGAAGTATGGGATACAGCAGGTCAAGAAC AATATCACTCCATTGTATCATTACATTTTCGAGAGGCTAAA TGTTTTATCATCGTTTATGACGTAACAGATATGGAATCATTTGAACAAATACGTAAATATTGGCTTAGATCCGTAGATGAGCATATGGATGAAGCAGTACCGGTGTTTTTCGTAGCTAATAAAATTGATATGATAAAAGATAAAAAAGTCTCGACAGAACAAGGTCAACAATTGACATCTCAACAAGCAGCTCATGGATTCTTTGAGACAAGTGCAAAAACCGGTAAAAATATACAAAATTTATTTCAAGCAGTTGCTGAATGCATGGTGTCTACATGGGGTGCTCCAAAACGTTGGTACGAAATAAATACTGAAGGTAATAATCATTTAGATCCATGGTCTAATTCGTATAATCATCGTTACAAGGATACAGTTCAATTAGATCAGAAAAAAGCTCATAATAAATTACGATGTTGTTTGACACATTAACTAACACGTATCATTTGAACAGTGATATCTTATTATTAACTATTCAAATTATACTACTTAAAATTGTATTAAGTAGTTGAATNTGTATCACATCANATCTTCAGCATCGTTTGATGTTAAACCTACTCACCAAGATAAANT]
[+] EMBL CD186857             [                                                                                                                                                                                                                                                                                                                                                                                                                              ATAT GAATCATTTGAACAAATACGTAAATATTGGCTTAGATCCGTAGATGAGCATATGGATGAAGCAGTACCGGTGTTTTTCGTAGCTAATAAAATTGATATGATAAAAGATAAAAAAGTCTCGACAGAACAAGGTCAACAATTGACATCTCAACAAGCAGCTCATGGATTCTTTGAGACAAGTGCAAAAACCGGTAAAAATATACAAAATTTATTTCAAGCAGTTGCTGAATGCATGGTGTCTACATGGGGTGCTCCAAAACGTTGGTACGAAATAAATACTGAAGGTAATAATCATTTAGATCCATGGTCTAATTCGTATAATCATCGTTACAAGGATACAGTTCAATTAGATCAGAAAAAAGCTCATAATAAATTACGATGTTGTTTGACACATTAACTAACACGT                                                                                                                                    ]




>consensus_8918#0
CGACAACAACTACTACTACAAAAAAACGTAAACAAAATGGTTATGTTAAACAATTTCTAC
AACAAAATGGTATGAGAAAAACAAAAAAAAGTAGTCCATTAATATCAGTGAATGGTACTG
GTGGAGGAATAGGTGAACAAAGATTTGATGCAAATTTTAAAGTATTATTACTTGGTAATT
CTGGTGTAGGAAAAACATCAATAATTAGAGCACTTGTTGGTGAAACATTTTATCAGACTA
CTATTTCAACAATTGGTATTGACTTGATTAAACGAATATTCACAGTTGAAAATCATCGTG
TACAATTAGAAGTATGGGATACAGCAGGTCAAGAACAATATCACTCCATTGTATCATTAC
ATTTTCGAGAGGCTAAATGTTTTATCATCGTTTATGACGTAACAGATATGGAATCATTTG
AACAAATACGTAAATATTGGCTTAGATCCGTAGATGAGCATATGGATGAAGCAGTACCGG
TGTTTTTCGTAGCTAATAAAATTGATATGATAAAAGATAAAAAAGTCTCGACAGAACAAG
GTCAACAATTGACATCTCAACAAGCAGCTCATGGATTCTTTGAGACAAGTGCAAAAACCG
GTAAAAATATACAAAATTTATTTCAAGCAGTTGCTGAATGCATGGTGTCTACATGGGGTG
CTCCAAAACGTTGGTACGAAATAAATACTGAAGGTAATAATCATTTAGATCCATGGTCTA
ATTCGTATAATCATCGTTACAAGGATACAGTTCAATTAGATCAGAAAAAAGCTCATAATA
AATTACGATGTTGTTTGACACATTAACTAACACGTATCATTTGAACAGTGATATCTTATT
ATTAACTATTCAAATTATACTACTTAAAATTGTATTAAGTAGTTGAATNTGTATCACATC
ANATCTTCAGCATCGTTTGATGTTAAACCTACTCACCAAGATAAANT

consensusID : consensus_8918#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 377
fasta sequence

                              [CATTTGAACAAATACGTAAATATTGGCTTAGATCCGTAGATGAGCATATGGATGAAGCAGTACCGGTGTTTTTCGTAGCTAATAAAATTGATATGATAAAAGATAAAAAAGTCTCGACAGAACAAGGTCAACAATTGACATCTCAACAAGCAGCTCATGGATTCTTTGAGACAAGTGCAAAAACCGGTAAAAATATACAAAATTTATTTCAAGCAGTTGCTGAATGCATGGTGTCTACATGGGGTGCTCCAAAATATAAGCAGTCAGACCGGCGAGTTGTAGTGGTTCCCGATTGTCAATTCAAGGCAGTAAGACTGCGAACTCAACAGAGTCAATACGTACATAACAGATCCTACAATTGAGATATAAAAACTGAC]

[+] EMBL CD202319             [CATTTGAACAAATACGTAAATATTGGCTTAGATCCGTAGATGAGCATATGGATGAAGCAGTACCGGTGTTTTTCGTAGCTAATAAAATTGATATGATAAAAGATAAAAAAGTCTCGACAGAACAAGGTCAACAATTGACATCTCAACAAGCAGCTCATGGATTCTTTGAGACAAGTGCAAAAACCGGTAAAAATATACAAAATTTATTTCAAGCAGTTGCTGAATGCATGGTGTCTACATGGGGTGCTCCAAAATATAAGCAGTCAGACCGGCGAGTTGTAGTGGTTCCCGATTGTCAATTCAAGGCAGTAAGACTGCGAACTCAACAGAGTCAATACGTACATAACAGATCCTACAATTGAGATATAAAAACTGAC]




>consensus_8918#1
CATTTGAACAAATACGTAAATATTGGCTTAGATCCGTAGATGAGCATATGGATGAAGCAG
TACCGGTGTTTTTCGTAGCTAATAAAATTGATATGATAAAAGATAAAAAAGTCTCGACAG
AACAAGGTCAACAATTGACATCTCAACAAGCAGCTCATGGATTCTTTGAGACAAGTGCAA
AAACCGGTAAAAATATACAAAATTTATTTCAAGCAGTTGCTGAATGCATGGTGTCTACAT
GGGGTGCTCCAAAATATAAGCAGTCAGACCGGCGAGTTGTAGTGGTTCCCGATTGTCAAT
TCAAGGCAGTAAGACTGCGAACTCAACAGAGTCAATACGTACATAACAGATCCTACAATT
GAGATATAAAAACTGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8918#0      CGACAACAACTACTACTACAAAAAAACGTAAACAAAATGGTTATGTTAAACAATTTCTAC 60
consensus_8918#1      ------------------------------------------------------------
                                                                                  

consensus_8918#0      AACAAAATGGTATGAGAAAAACAAAAAAAAGTAGTCCATTAATATCAGTGAATGGTACTG 120
consensus_8918#1      ------------------------------------------------------------
                                                                                  

consensus_8918#0      GTGGAGGAATAGGTGAACAAAGATTTGATGCAAATTTTAAAGTATTATTACTTGGTAATT 180
consensus_8918#1      ------------------------------------------------------------
                                                                                  

consensus_8918#0      CTGGTGTAGGAAAAACATCAATAATTAGAGCACTTGTTGGTGAAACATTTTATCAGACTA 240
consensus_8918#1      ------------------------------------------------------------
                                                                                  

consensus_8918#0      CTATTTCAACAATTGGTATTGACTTGATTAAACGAATATTCACAGTTGAAAATCATCGTG 300
consensus_8918#1      ------------------------------------------------------------
                                                                                  

consensus_8918#0      TACAATTAGAAGTATGGGATACAGCAGGTCAAGAACAATATCACTCCATTGTATCATTAC 360
consensus_8918#1      ------------------------------------------------------------
                                                                                  

consensus_8918#0      ATTTTCGAGAGGCTAAATGTTTTATCATCGTTTATGACGTAACAGATATGGAATCATTTG 420
consensus_8918#1      ------------------------------------------------------CATTTG 6
                                                                            ******

consensus_8918#0      AACAAATACGTAAATATTGGCTTAGATCCGTAGATGAGCATATGGATGAAGCAGTACCGG 480
consensus_8918#1      AACAAATACGTAAATATTGGCTTAGATCCGTAGATGAGCATATGGATGAAGCAGTACCGG 66
                      ************************************************************

consensus_8918#0      TGTTTTTCGTAGCTAATAAAATTGATATGATAAAAGATAAAAAAGTCTCGACAGAACAAG 540
consensus_8918#1      TGTTTTTCGTAGCTAATAAAATTGATATGATAAAAGATAAAAAAGTCTCGACAGAACAAG 126
                      ************************************************************

consensus_8918#0      GTCAACAATTGACATCTCAACAAGCAGCTCATGGATTCTTTGAGACAAGTGCAAAAACCG 600
consensus_8918#1      GTCAACAATTGACATCTCAACAAGCAGCTCATGGATTCTTTGAGACAAGTGCAAAAACCG 186
                      ************************************************************

consensus_8918#0      GTAAAAATATACAAAATTTATTTCAAGCAGTTGCTGAATGCATGGTGTCTACATGGGGTG 660
consensus_8918#1      GTAAAAATATACAAAATTTATTTCAAGCAGTTGCTGAATGCATGGTGTCTACATGGGGTG 246
                      ************************************************************

consensus_8918#0      CTCCAAAACGTTGGTACGAAATAAATACTGAAGGTAATAATCATTTAGATCCATGGTCTA 720
consensus_8918#1      CTCCAAAATATAAGCA----GTCAGACCGGCGAGTTGTAGTGGTTC---CCGATTGTC-A 298
                      ********  *  * *     * *   * *   **  ** *  **     * ** *** *

consensus_8918#0      ATTCGTATAATCATCGTTACAAGGATACAGTTCAATTAGATCAGAAAAAAGCTCATAATA 780
consensus_8918#1      ATTCAAGGCAGTAAGACTGCGAA-------CTCAACAGAGTC---AATACGTACATAACA 348
                      ****     *  *    * * *         ****     **   ** * *  ***** *

consensus_8918#0      AATTACGATGTTGTTTGACACATTAACTAACACGTATCATTTGAACAGTGATATCTTATT 840
consensus_8918#1      GATCCTACAATTGA--GATATAAAAACTGAC----------------------------- 377
                       **       ***   ** * *  **** **                             

consensus_8918#0      ATTAACTATTCAAATTATACTACTTAAAATTGTATTAAGTAGTTGAATNTGTATCACATC 900
consensus_8918#1      ------------------------------------------------------------
                                                                                  

consensus_8918#0      ANATCTTCAGCATCGTTTGATGTTAAACCTACTCACCAAGATAAANT 947
consensus_8918#1      -----------------------------------------------