cluster # 8923

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Schistosoma mansoni
cluster # 8923 cluster # 8923 Sequences # 8 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8923#0 length = 463 sequences # 2

consensus_8923#1 length = 460 sequences # 4
consensus_8923#2 length = 457 sequences # 2

consensusID : consensus_8923#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 463
fasta sequence

                              [TCATATCAAAGTAAACTATGTATGATAAAATATACACGTATATATATAGAGAGAGAGGGGGGGAGGGAGAGGGAGCTGAGGTCGATGAACAGCGGTACACAAAAAGAACCGAAATCAACAGGCAACAAAGAAACAAGAAGAAATCTTAACTAGTACAGAAAAATAGAAGAATCATTAAAAGTTAGATAATACAGATTCAAGAATTACCATTAATATTGGTAAAAATAATATACTGAACAAGCATAATACATAGATACGAGTTTTTGGATGGATAATCCTTTTTAATAAACTAACATTATTATTTATATTGATTATACCATGTGATAATTTACCAATAGTTGAATAGGTTGGACCATGATGCCATTTAACAAGACGATCTACACTTACACTAACTAAATCAAATGAATCTGATTTTAAAGGAAGATGAGATATCGGTTTTTGACATGTTCTACTTAATACATAT]

[+] EMBL CD069715             [TCATATCAAAGTAAACTATGTATGATAAAATATACACGTATATATATAGAGAGAGAGGGGGGGAGGGAGAGGGAGCTGAGGTCGATGAACAGCGGTACACAAAAAGAACCGAAATCAACAGGCAACAAAGAAACAAGAAGAAATCTTAACTAGTACAGAAAAATAGAAGAATCATTAAAAGTTAGATAATACAGATTCAAGAATTACCATTAATATTGGTAAAAATAATATACTGAACAAGCATAATACATAGATACGAGTTTTTGGATGGATAATCCTTTTTAATAAACTAACATTATTATTTATATTGATTATACCATGTGATAATTTACCAATAGTTGAATAGGTTGGACCATGATGCCATTTAACAAGACGATCTACACTTACACTAACTAAATCAAATGAATCTGATTTTAAAGGAAGATGAGATATCGGTTTTTGACATGTTCTACTTAATACATAT]
[+] EMBL CD069720             [TCATATCAAAGTAAACTATGTATGATAAAATATACACGTATATATATAGAGAGAGAGGGGGGGAGGGAGAGGGAGCTGAGGTCGATGAACAGCGGTACACAAAAAGAACCGAAATCAACAGGCAACAAAGAAACAAGAAGAAATCTTAACTAGTACAGAAAAATAGAAGAATCATTAAAAGTTAGATAATACAGATTCAAGAATTACCATTAATATTGGTAAAAATAATATACTGAACAAGCATAATACATAGATACGAGTTTTTGGATGGATAATCCTTTTTAATAAACTAACATTATTATTTATATTGATTATACCATGTGATAATTTACCAATAGTTGAATAGGTTGGACCATGATGCCATTTAACAAGACGATCTACACTTACACTAACTAAATCAAATGAATCTGATTTTAAAGGAAGATGAGATATTGGTTTTTGACATGTTCTACTTAA       ]




>consensus_8923#0
TCATATCAAAGTAAACTATGTATGATAAAATATACACGTATATATATAGAGAGAGAGGGG
GGGAGGGAGAGGGAGCTGAGGTCGATGAACAGCGGTACACAAAAAGAACCGAAATCAACA
GGCAACAAAGAAACAAGAAGAAATCTTAACTAGTACAGAAAAATAGAAGAATCATTAAAA
GTTAGATAATACAGATTCAAGAATTACCATTAATATTGGTAAAAATAATATACTGAACAA
GCATAATACATAGATACGAGTTTTTGGATGGATAATCCTTTTTAATAAACTAACATTATT
ATTTATATTGATTATACCATGTGATAATTTACCAATAGTTGAATAGGTTGGACCATGATG
CCATTTAACAAGACGATCTACACTTACACTAACTAAATCAAATGAATCTGATTTTAAAGG
AAGATGAGATATCGGTTTTTGACATGTTCTACTTAATACATAT

consensusID : consensus_8923#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 460
fasta sequence

                              [ATGAGAAATATACAACTGATAGATAATGATAATCACACACAAAAAGAAACAATGAAAAAAAAGAGTGATAGACAAAACAGAATTCATTTCGCAAATTGAGAAAAGAAACCTTGTTTGTCTCCATAAATGAATATATATGACAATATTAGTTAAAGTTAACAAAAAACTAAATTAGGTAGTAGATTTGTAATAATAGTGTCACTAATTTCAATAATCTGTGAAATGTAGTATGAAAGAGTTAATAATGTCATTAATCTTTCATTGAATTGAAAGAGAATTTCAATAATATAAGGGAAGAACCACTAGTATAACTTCACAGTGATGCCACTTTTATTAAACAGTTGTACGGTACGACAAAAGCTAGATAAAAATGTGTCACAGTTGGAATGAGGAGTTTCTTTACATTTTTTAGATTTAATTTTAAGTAATCTGTTCACAGTGATGTAAACTGAAATTTCAT]

[+] EMBL CD069732             [ATGAGAAATATACAACTGATAGATAATGATAATCACACACAAAAAGAAACAATGAAAAAAAAGAGTGATAGACAAAACAGAATTCATTTCGCAAATTGAGAAAAGAAACCTTGTTTGTCTCCATAAATGAATATATATGACAATATTAGTTAAAGTTAACAAAAAACTAAATTAGGTAGTAGATTTGTAATAATAGTGTCACTAATTTCAATAATCTGTGAAATGTAGTATGAAAGAGTTAATAATGTCATTAATCTTTCATTGAATTGAAAGAGAATTTCAATAATATAAGGGAAGAACCACTAGTATAACTTCACAGTGATGCCACTTTTATTAAACAGTTGTACGGTACGACAAAAACTAGATAAAAATGTGTCACAGTTGGAATGAGGAGTTTCTTTACATTTTTTAGATTTAATTTTAAGTAATCTGTTCACAGTGATGTAAACTGAAATTTCAT]
[+] EMBL CD069747             [ TGAGAAATATACAACTGATAGATAATGATGATCACACACAAAAAGAAACAATGAAAAAAAAGAGTGATAGACAAAACAGAATTCATTTCGCAAATTGAGAAAAGAAACCTTGTTTGTCTCCATAAATGAATATATATGACAATATTAGTTAAAGTTAACAAAAAACTAAATTAGGTAGGAGATTTGTAATAATAGTGTCACTAATTTCAATAATCCGTGAAATGTAGTATGAAAGAGTTAATAATGTCATTAATCTTTCATTGAATTGAAAGAGAATTTCAATAATATAAGGGAAGAACCACTAGTATAACTTCACAGTGATGCCACTTTTATTAAACAGTTGTACGGTACGACAAAAGCTAGATAACAATGTGTCACAGTTGGAATGAGGAGTTTCTTTACAT                                                       ]
[+] EMBL CD069729             [ TGAGAAATATACAACTGATAGATAATGATAATCACACACAAAAAGAAACAATGAAAAAAAAGAGTGATAGACAAAACAGAATTCATTTCGCAAATTGAGAAAAGAAACCTTGTTTGTCTCCATAAATGAATATATATGACAATATTAGTTAAAGTTAACAAAAAACTAAATTAGGTAGTAGATTTGTAATAATAGTGTCACTAATTTCAATAATCTGTGAAATGTAGTATGAAAGAGTTAATAATGTCATTAATCTTTCATTGAATTGAAAGAGAATTTCAATAATATAAGGGAAGAACCACTAGTATAACTTCACAGTGATGCCACTTTTATTAAACAGTTGTACGGTACGACAAAAGCTAGATAAAAATGTGTCACAGTGGGAATGAGGAGTTTCTTTA                                                          ]
[+] EMBL CD134424             [                                      ACAAAAAGAAACAATGAAAAAAAAGAGTGATAGACAAAACAGAATTCATTTCGCAAATTGAGAAAAGAAACCTTGTTTGTCTCCATAAATGAATATATATGACAATATTAGTT                                                                                                                                                                                                                                                                                                                     ]




>consensus_8923#1
ATGAGAAATATACAACTGATAGATAATGATAATCACACACAAAAAGAAACAATGAAAAAA
AAGAGTGATAGACAAAACAGAATTCATTTCGCAAATTGAGAAAAGAAACCTTGTTTGTCT
CCATAAATGAATATATATGACAATATTAGTTAAAGTTAACAAAAAACTAAATTAGGTAGT
AGATTTGTAATAATAGTGTCACTAATTTCAATAATCTGTGAAATGTAGTATGAAAGAGTT
AATAATGTCATTAATCTTTCATTGAATTGAAAGAGAATTTCAATAATATAAGGGAAGAAC
CACTAGTATAACTTCACAGTGATGCCACTTTTATTAAACAGTTGTACGGTACGACAAAAG
CTAGATAAAAATGTGTCACAGTTGGAATGAGGAGTTTCTTTACATTTTTTAGATTTAATT
TTAAGTAATCTGTTCACAGTGATGTAAACTGAAATTTCAT

consensusID : consensus_8923#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 457
fasta sequence

                              [TCATATCAAAGTAAACTATGTATGATAAAATATACACGTATATATATAGAGAGAGAGGGGGGGAGGGAGAGGGAGCTGAAGTCGATGAACAGCGGTACACAAAAAGAACCGAAATCAACAGGCAACAAAGAAACAATGAAAAAAAAGAGTGATAGACAAAACAGAATTCATTTCGCAAATTGAGAAAAGAAACCTTGTTTGTCTCCATAAATGAATATATATGACAATATTAGCTAAAGTTAACAAAAAACTAAATTAGGTAGTAGATTTGTAATAATAGTGTCACTAATTTCAATAATCTGTGAAATGTAGTATGAAAGAGTTAATAATGTCATTAATCTTTCATTGAATTGAAAGAGAATTTCAATAATATAAGGGAAGAACCACTAGTATAACTTCACAGTGATGCCACTTTTATTAAACAGTTGTACGGTACGACCAAAGCTAGATAAAAATG]

[+] EMBL CD069773             [TCATATCAAAGTAAACTATGTATGATAAAATATACACGTATATATATAGAGAGAGAGGGGGGGAGGGAGAGGGAGCTGAAGTCGATGAACAGCGGTACACAAAAAGAACCGAAATCAACAGGCAACAAAGAAACAATGAAAAAAAAGAGTGATAGACAAAACAGAATTCATTTCGCAAATTGAGAAAAGAAACCTTGTTTGTCTCCATAAATGAATATATATGACAATATTAGCTAAAGTTAACAAAAAACTAAATTAGGTAGTAGATTTGTAATAATAGTGTCACTAATTTCAATAATCTGTGAAATGTAGTATGAAAGAGTTAATAATGTCATTAATCTTTCATTGAATTGAAAGAGAATTTCAATAATATAAGGGAAGAACCACTAGTATAACTTCACAGTGATGCCACTTTTATTAAACAGTTGTACGGTACGACCAAAGCTAGATAAAAATG]
[+] EMBL CD069780             [TCATATCAAAGTAAACTATGTATGATAAAATATACACGTATATATATAGAGAGAGAGGGGGGGAGGGAGAGGGAGCTGAAGTCGATGAACAGCGGTACACAAAAAGAACCGAAATCAACAGGCAACAAAGAAACAATGAAAAAAAAGAGTGATAGACAAAACAGAATTCATTTCGCAAATTGAGAAAAGAAACCTTGTTTGTCTCCATAAATGAATATATATGACAATATTAGCTAAAGTTAACAAAAAACTAAATTAGGTAGTAGATTTGTAATAATAGTGTCACTAATTTCAATAATCTGTGAAATGTAGTATGAAAGAGTTAATAATGTCATTAATCTTTCATTGAATTGAAAGAGAATTTCAATAATATAAGGGAAGAACCACTAGTATAACTTCACAGTGATGCCACTTTTATTAAACAGTTGTACGGTACGACAAAAGCTAGA        ]




>consensus_8923#2
TCATATCAAAGTAAACTATGTATGATAAAATATACACGTATATATATAGAGAGAGAGGGG
GGGAGGGAGAGGGAGCTGAAGTCGATGAACAGCGGTACACAAAAAGAACCGAAATCAACA
GGCAACAAAGAAACAATGAAAAAAAAGAGTGATAGACAAAACAGAATTCATTTCGCAAAT
TGAGAAAAGAAACCTTGTTTGTCTCCATAAATGAATATATATGACAATATTAGCTAAAGT
TAACAAAAAACTAAATTAGGTAGTAGATTTGTAATAATAGTGTCACTAATTTCAATAATC
TGTGAAATGTAGTATGAAAGAGTTAATAATGTCATTAATCTTTCATTGAATTGAAAGAGA
ATTTCAATAATATAAGGGAAGAACCACTAGTATAACTTCACAGTGATGCCACTTTTATTA
AACAGTTGTACGGTACGACCAAAGCTAGATAAAAATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8923#1      ------------------------------------------------------------
consensus_8923#2      TCATATCAAAGTAAACTATGTATGATAAAATATACACGTATATATATAGAGAGAGAGGGG 60
consensus_8923#0      ------------------------------------------------------------
                                                                                  

consensus_8923#1      ------------------------ATGAGAAATATACA---ACTGATAGATAATGATAAT 33
consensus_8923#2      GGGAGGGAGAGGGAGCTGAAGTCGATGAACAGCGGTAC---ACAAAAAGA-ACCGAAATC 116
consensus_8923#0      TCATATCAAAGTAAACTATGTATGATAAAATATACACGTATATATATAGAGAGAGAGGGG 60
                                              ** *             *   * *** *  **    

consensus_8923#1      CACACACAA-AAAGAAACAATGAAAAAAAAGAGTGATAGACAAAA----CAGAATTCATT 88
consensus_8923#2      AACAGGCAACAAAGAAACAATGAAAAAAAAGAGTGATAGACAAAA----CAGAATTCATT 172
consensus_8923#0      GGGAGGGAG-AGGGAGCTGAGGTCGATGAACAGCGGTACACAAAAAGAACCGAAATCAAC 119
                         *   *  *  **    * *   *  ** ** * ** ******    * *** ***  

consensus_8923#1      TCGCAA-ATTGAGAAAAGAAACCTTGTTTGTCTCCATAAATGAATATATATGACAATATT 147
consensus_8923#2      TCGCAA-ATTGAGAAAAGAAACCTTGTTTGTCTCCATAAATGAATATATATGACAATATT 231
consensus_8923#0      AGGCAACAAAGAAACAAGAAGAAATCTTAACTAGTACAGAAAAATAGAAGAATCATTAAA 179
                        **** *  ** * *****    * **       * * *  **** *     ** **  

consensus_8923#1      AGTTAAAGTTAACAAAAAACTAAATTAGGTAGTAGATTTGTAATAATAGTGTCACTAATT 207
consensus_8923#2      AGCTAAAGTTAACAAAAAACTAAATTAGGTAGTAGATTTGTAATAATAGTGTCACTAATT 291
consensus_8923#0      AGTTAGATAATACAGATTCAAGAATTACCATTAATATTGGTAAAAATAATATACTGAACA 239
                      ** ** *    *** *      *****      * *** **** **** * *    **  

consensus_8923#1      TCAATAATCTGTGAAATGTAGTAT--GAAAGAGTTAATAATGTCATTAATCTTTCATTGA 265
consensus_8923#2      TCAATAATCTGTGAAATGTAGTAT--GAAAGAGTTAATAATGTCATTAATCTTTCATTGA 349
consensus_8923#0      AGCATAATACATAGATACGAGTTTTTGGATGGATAATCCTTTTTAATAAACTAACATTAT 299
                         *****   *  *    *** *  * * *  * *    * * * *** **  ****  

consensus_8923#1      -ATTGAAAGAGAATTT-CAATAATATAAGGGAAGAACCACTAGTATAACTTCACAGTGAT 323
consensus_8923#2      -ATTGAAAGAGAATTT-CAATAATATAAGGGAAGAACCACTAGTATAACTTCACAGTGAT 407
consensus_8923#0      TATTTATATTGATTATACCATGTGATAATTTACCAATAGTTGAATAGGTTGGACCATGAT 359
                       *** * *  ** * * * **   ****   *  **    *        *  **  ****

consensus_8923#1      GCCACTTTTATTAAACAGTTGTACGGTACGACAAAAGCTAGATAAAAATGTGTCACAGTT 383
consensus_8923#2      GCCACTTTTATTAAACAGTTGTACGGTACGACCAAAGCTAGATAAAAATG---------- 457
consensus_8923#0      GCCA--TTTAACAAGACGATCTACACT--TACACTAACTAAATCAAA-TGAATCTGATTT 414
                      ****  ****  **   * * ***  *   **   * *** ** *** **          

consensus_8923#1      GGAATGAGGAGTTTCTTTACATTTTTTAGATTTAATTTTAAGTAATCTGTTCACAGTGAT 443
consensus_8923#2      ------------------------------------------------------------
consensus_8923#0      TAAAGGAAGATGAGATATCGGTTTTTGACAT---GTTCTACTTAATACATAT-------- 463
                                                                                  

consensus_8923#1      GTAAACTGAAATTTCAT 460
consensus_8923#2      -----------------
consensus_8923#0      -----------------