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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8927#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 922 fasta sequence
[ACAGTATATTCGAAATGAATACAACAAAATTCATTACTGTAATAACACCAAGGTTTCCGTAAATGAACTATCATGAAAAATCAGTAATAAATAAGTACATAAAAACACAAATGATCGAGCAAAGATAATGTGGCTTCACATTAAATTATACGTACATAGATCCCACATAATAAGTGAATGCATGATAAAGCTAATACAAGAAAAACGGGAAAGTAATAGAAATCCTGAAGTGAAACAATTACCTTCGGAGTCGTAAAAGGTATTTCATTCAAAGATTTGAAGGCATGATAAACTCATTTTTCGTGAAAATACATTATATTCATACACAAAGAATAGCGAAAAATAGCTATTGCTGCGAATATTTATTATTAATTAGTGGTATATGTTGCCACTATGAAATCATAATATACTAGGTATAACAATGCAAAATTCCTACATGGTTATCAAGAAAGCGATATTCGTCTTTGTTGAAAAAGTTTCCAGTATACTTGATGAGAGTTTAGAAGAGACAATTTAGTACAAAAAACATAAGATAACACAAATGTGCCGTAAACGCTTCAGGATAAAAT-TACATTGGAGTTTGGTGACCTGACAAAAATACACGTAGAGGTTACTCATATTAGGGTAGAACTAGGTAACTTCAACATAATCATACAATTAAGATTATGAAATAGACTAATGTTGAAAACATTGTATGGAAGTATTTTCTTTTCTTGTTCAGTCTTCATCGTCAATCATATCTTCATCATCACTTTCCTCAGCTTTAAGTTTATTTGTACTTCTATCTGAATCAACGTCTAGAAACTTGTAGTCACATGTAGCCATATCTATTGCCCACTGGAATTTTTCTCTTTGAGTTCTGTTAAAAATTTTCTCAATAGGAACGTTATACTTTTTACACCTTTTTCTGTAAATTCTCCAT]
[+] EMBL CD074730 [ACAGTATATTCGAAATGAATACAACAAAATTCATTACTGTAATAACACCAAGGTTTCCGTAAATGAACTATCATGAAAAATCAGTAATAAATAAGTACATAAAAACACAAATGATCGAGCAAAGATAATGTGGCTTCACATTAAATTATACGTACATAGATCCCACATAATAAGTGAATGCATGATAAAGCTAATACAAGAAAAACGGGAAAGTAATAGAAATCCTGAAGTGAAACAATTACCTTCGGAGTCGTAAAAGGTATTTCATTCAAAGATTTGAAGGCATGATAAACTCATTTTTCGTGAAAATACATTATATTCATACACAAAGAATAGCGAAAAATAGCTATTGCTGCGAATATTTATTATTAATTAGTGGTATATGTTGCCACTATGAAATCATAATATACTAGGTATAACAATGCAAAATTCCTACATGGTTATCAAGAAAGCGATATTCGTCTTTGTTGAAAAAGTTTCCAGTATACTTGATGAGAGTTTAGAAGAGACAATTTAGTACAAAAAACATAAGATAACACAAATGTGCCGTAAACGCTTCAGGATAAAATNTACATTGGAGTTTGGTGACCTGACAAAAATACACGTAGAGGTTAC ]
[-] EMBL CD185426 [ AATTCTTACATGGTTATCAAGAAAGCGATATTCGTCTTTGTTGAAAAAGTTTCCAGTATACTTGATGAGAGTTTAGAAGAGACAATTTAGTACAAAAAACATAAGATAACACAAATGTGCCGTAAACGCTTCAGGATAAAAT TACATTGGAGTTTGGTGACCTGACAAAAATACACGTAGAGGTTACTCATATTAGGGTAGAACTAGGTAACTTCAACATAATCATACAATTAAGATTATGAAATAGACTAATGTTGAAAACATTGTATGGAAGTATTTTCTTTTCTTGTTCAGTCTTCATCGTCAATCATATCTTCATCATCACTTTCCTCAGCTTTAAGTTTATTTGTACTTCTATCTGAATCAACGTCTAGAAACTTGTAGTCACATGTAGCCATATCTATTGCCCACTGGAATTTTTCTCTTTGAGTTCTGTTAAAAATTTTCTCAATAGGAACGTTATACTTTTTACACCTTTTTCTGTAAATTCTCCAT]
[-] EMBL CD133935 [ AATTCCTACATGGTTATCAAGAAAGCGATATTCGTCTTTGTTGAAAAAGTTTCCAGTATACTTGATGAGAGTTTAGAAGAGACAATTTAGTACAAAAAACATAAGATAACACAAATGTGCCGTAAACGCTTCAGGATAAAAT TACATTGGAGTTTGGTGACCTGACAAAAATACACGTAGAGGTTACTCATATTAGGGTAGAACTAGGTAACTTCAACATAATCATACAATTAAGATTATGAAATAGACTAATGTTGAAAACATTGTATGGAAGTATTTTCTTTTCTTGTTCAGTCTTCATCGTCAATCATATCTTCATCATCACTTTCCTCAGCTTTAAGTTTATTTGTACTTCTATCTGAATCAACGTCTAGAAACTTGTAGTCACATGTAGCCATATCTATTGCCCACTGGAATTTTTCTCTTTGAGTTCTGTTAAAAATTTTCTCAATAGGAACGTTATACTTTTTACACCTTTTTCTGTAAATTCTCCAT]
consensusID : consensus_8927#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 672 fasta sequence
[TCGTGAAAATACATATATTTCATACCATTAATTAGTGGTATATGTTGCCACTATGAAATCATAATATACTAGGTATAACAATGCAAAATTCNTACATGGTTATCAAGAAAGCGATATTCGTCTTTGTTGAAAAAGTTTCCAGTATACTTGATGAGAGTTTAGAAGAGACAATTTAGTACAAAAAACATAAGATAACACAAATTGGAGTTTGGTGACCTGACAAAAATACACGTAGAGGTTACTCATATTAGGGTAGAACTAGGTAACTTCAACATAATCATACAATTAAGATTATGAAATAGACTAATGTTGAAAACATTGTATGGAAGTATTTTCTTTTCTTGTTNNNNNNNNNNNNNNNNTCATATCTTCATCATCACTTTCCTCAGCTTTAAGTTTATTTGTACTTCTATCTGAATCAACGTCTAGAAACTTGTAGTCACATGTAGCCATATCTATTGCCCACTGGAATTTTTCTCTTTGAGTTCTGTTAAAAATTTTCTCAATAGNNNNNNTATACTTTTTACACCAAGCAACTGAAATCCGAGGATCGAGGTAGTTCAGTTTACTTGTACTGAGAGCGATCTCTTTATTTTCATCTCGATCAGTTGCTTGAAGCTGCAATTTTGATAAAGCCTCTTTAGCAGATGCTAGGCGTTTCTTCAGCTTTTG]
[-] EMBL CD080898 [TCGTGAAAATACATATATTTCATACCATTAATTAGTGGTATATGTTGCCACTATGAAATCATAATATACTAGGTATAACAATGCAAAATTCNTACATGGTTATCAAGAAAGCGATATTCGTCTTTGTTGAAAAAGTTTCCAGTATACTTGATGAGAGTTTAGAAGAGACAATTTAGTACAAAAAACATAAGATAACACAAATTGGAGTTTGGTGACCTGACAAAAATACACGTAGAGGTTACTCATATTAGGGTAGAACTAGGTAACTTCAACATAATCATACAATTAAGATTATGAAATAGACTAATGTTGAAAACATTGTATGGAAGTATTTTCTTTTCTTGTTNNNNNNNNNNNNNNNNTCATATCTTCATCATCACTTTCCTCAGCTTTAAGTTTATTTGTACTTCTATCTGAATCAACGTCTAGAAACTTGTAGTCACATGTAGCCATATCTATTGCCCACTGGAATTTTTCTCTTTGAGTTCTGTTAAAAATTTTCTCAATAGNNNNNNTATACTTTTTACACCAAGCAACTGAAATCCGAGGATCGAGGTAGTTCAGTTTACTTGTACTGAGAGCGATCTCTTTATTTTCATCTCGATCAGTTGCTTGAAGCTGCAATTTTGATAAAGCCTCTTTAGCAGATGCTAGGCGTTTCTTCAGCTTTTG]
consensusID : consensus_8927#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 442 fasta sequence
[AGAGGCTTATATATATGCATAGCCATAAGGAATATGATCTTTCGAATGAATGATATCCTGCTAGACCAATACAACACATCTTACCAAGCAACTGAAATCCGAGGATCGAGGTAGTTCAGTTTACTTGTACTGAGAGCGATCTCTTTATTTTCATCTCGATCAGTTGCTTGAAGCTGCAATTTTGATAAAGCCTCTTTAGCAGATGCTAGGCGTTTCTTCAGCTTTTCATAAGCGACCTTCTTGGATGCTTGTTTGTGATTTTTGTAATCTGCTTTTATTTGTTTAGCTTCAGACGTTATTTCCGAAATTTGCTCACGTTTTGCATCGATCTTTTTCTGTAAATTCTCCATTGATTTTGCAAAAGATTTCGGAACTGAACGCTGATGGTTACAGAGAACAGCAACTGCTCGATTTGCTCGATTATATGCCAGAAGTTTAGCAT]
[+] EMBL CD069643 [AGAGGCTTATATATATGCATAGCCATAAGGAATATGATCTTTCGAATGAATGATATCCTGCTAGACCAATACAACACATCTTACCAAGCAACTGAAATCCGAGGATCGAGGTAGTTCAGTTTACTTGTACTGAGAGCGATCTCTTTATTTTCATCTCGATCAGTTGCTTGAAGCTGCAATTTTGATAAAGCCTCTTTAGCAGATGCTAGGCGTTTCTTCAGCTTTTCATAAGCGACCTTCTTGGATGCTTGTTTGTGATTTTTGTAATCTGCTTTTATTTGTTTAGCTTCAGACGTTATTTCCGAAATTTGCTCACGTTTTGCATCGATCTTTTTCTGTAAATTCTCCATTGATTTTGCAAAAGATTTCGGAACTGAACGCTGATGGTTACAGAGAACAGCAACTGCTCGATTTGCTCGATTATATGCCAGAAGTTTAGCAT]
consensusID : consensus_8927#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 406 fasta sequence
[AACTAGGTAACTTCAACATAATCATACAATTAAGATTATGAAATAGACTAATGTTGAAAACATTGTATGGAAGTATTTTCTTTTCTTGTTCAGTCTTCATCGTCAATCATATCTTCATCATCACTTTCCTCAGCTTTAAGTTTATTTGTACTTCTATCTGAATCAACGTCTAGAAACTTGTAGTCACATGTAGCCATATCTATTGCCCACTGGAATTTTTCTCTTTGAGTTCTGTTAAAAATTTTCTCAATAGGAACGTTATACTTTTTACACCTTTTTAAAAGGAATACAAAATAATTACGACTTGAAAATAGATAACTAGCAAAAACAAAGATCAACACATGTGGAGCTGATTGGGACCGAGAAAATTGAAATTGGGATAATTGGTTGTAATATTACGACACGA]
[+] EMBL CD137026 [AACTAGGTAACTTCAACATAATCATACAATTAAGATTATGAAATAGACTAATGTTGAAAACATTGTATGGAAGTATTTTCTTTTCTTGTTCAGTCTTCATCGTCAATCATATCTTCATCATCACTTTCCTCAGCTCTAAGTTTATTTGTACTTCTATCTGAATCAACGTCTAGAAACTTGTAGTCACATGTAGCCATATCTATTGCCCACTGGAATTTTTCTCTTTGAGTTCTGTTAAAAATTTTCTCAATAGGAACGTTATACTTTTTACACCTTTTTAAAAGGAATACAAAATAATTACGACTTGAAAATAGATAACTAGCAAAAACAAAGATCAACACATGTGGAGCTGATTGGGACCGAGAAAATTGAAATTGGGATAATTGGTTGTAATATTACGACACG ]
[+] EMBL CD136912 [AACTAGGTAACTTCAACATAATCATACAATTAAGATTATGAAATAGACTAATGTTGAAAACATTGTATGGAAGTATTTTCTTTTCTTGTTCAGTCTTCATCGTCAATCATATCTTCATCATCACTTTCCTCAGCTTTAAGTTTATTTGTACTTCTATCTGAATCAACGTCTAGAAACTTGTAGTCACATGTAGCCATATCTATTGCCCACTGGAATTTTTCTCTTTGAGTTCTGTTAAAAATTTTCTCAATAGGAACGTTATACTTTTTACACCTTTTTAAAAGGAATACAAAATAATTACGACTTGAAAATAGATAACTAGCAAAAACAAAGATCAACACATGTGGAGCTGATTGNGACCGAGAAAATTGAAATTGGGATAATTGGTTGTAATATTACGACACG ]
[-] EMBL CD137182 [ ACTAGGTAACTTCAACATAATCATACAATTAAGATTATGAAATAGACTAATGTTGAAAACATTGTATGGAAGTATTTTCTTTTCTTGTTCAGTCTTCATCGTCAATCATATCTTCATCATCACTTTCCTCAGCTTTAAGTTTATTTGTACTTCTATCTGAATCAACGTCTAGAAACTTGTAGTCACATGTAGCCATATCTATTGCCCACTGGAATTTTTCTCTTTGAGTTCTGTTAAAAATTTTCTCAATAGGAACGTTATACTTTTTACACCTTTTTAAAAGGAATACAAAATAATTACGACTTGAAAATAGATAACTAGCAAAAACAAAGATCAACACATGTGGAGCTGATTGGGACCGAGAAAATTGAAATTGGGATAATTGGTTGTAATATTACGACACGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8927#0 ACAGTATATTCGAAATGAATACAACAAAATTCATTACTGTAATAACACCAAGGTTTCCGT 60
consensus_8927#3 ------------------------------------------------------------
consensus_8927#1 ------------------------------------------------------------
consensus_8927#2 ------------------------------------------------------------
consensus_8927#0 AAATGAACTATCATGAAAAATCAGTAATAAATAAGTACATAAAAACACAAATGATCGAGC 120
consensus_8927#3 ------------------------------------------------------------
consensus_8927#1 ------------------------------------------------------------
consensus_8927#2 ------------------------------------------------------------
consensus_8927#0 AAAGATAATGTGGCTTCACATTAAATTATACGTACATAGATCCCACATAATAAGTGAATG 180
consensus_8927#3 ------------------------------------------------------------
consensus_8927#1 ------------------------------------------------------------
consensus_8927#2 ------------------------------------------------------------
consensus_8927#0 CATGATAAAGCTAATACAAGAAAAACGGGAAAGTAATAGAAATCCTGAAGTGAAACAATT 240
consensus_8927#3 ------------------------------------------------------------
consensus_8927#1 ------------------------------------------------------------
consensus_8927#2 ------------------------------------------------------------
consensus_8927#0 ACCTTCGGAGTCGTAAAAGGTATTTCATTCAAAGATTTGAAGGCATGATAAACTCATTTT 300
consensus_8927#3 ------------------------------------------------------------
consensus_8927#1 ------------------------------------------------------------
consensus_8927#2 ------------------------------------------------------------
consensus_8927#0 TCGTGAAAATACATTATATTCATACACAAAGAATAGCGAAAAATAGCTATTGCTGCGAAT 360
consensus_8927#3 ------------------------------------------------------------
consensus_8927#1 -----------------------------------------TCGTGAAAATACATATATT 19
consensus_8927#2 ------------------------------------------------------------
consensus_8927#0 ATTTATTATTAATTAGTGGTATATGTTGCCACTATGAAATCATAATATACTAGGTATAAC 420
consensus_8927#3 ------------------------------------------------------------
consensus_8927#1 TCATACCATTAATTAGTGGTATATGTTGCCACTATGAAATCATAATATACTAGGTATAAC 79
consensus_8927#2 ------------------------------------------------------------
consensus_8927#0 AATGCAAAATTCCTACATGGTTATCAAGAAAGCGATATTCGTCTTTGTTGAAAAAGTTTC 480
consensus_8927#3 ------------------------------------------------------------
consensus_8927#1 AATGCAAAATTCNTACATGGTTATCAAGAAAGCGATATTCGTCTTTGTTGAAAAAGTTTC 139
consensus_8927#2 ------------------------------------------------------------
consensus_8927#0 CAGTATACTTGATGAGAGTTTAGAAGAGACAATTTAGTACAAAAAACATAAGATAACACA 540
consensus_8927#3 ------------------------------------------------------------
consensus_8927#1 CAGTATACTTGATGAGAGTTTAGAAGAGACAATTTAGTACAAAAAACATAAGATAACACA 199
consensus_8927#2 ------------------------------------------------------------
consensus_8927#0 AATGTGCCGTAAACGCTTCAGGATAAAATTACATTGGAGTTTGGTGACCTGACAAAAATA 600
consensus_8927#3 ------------------------------------------------------------
consensus_8927#1 AAT-------------------------------TGGAGTTTGGTGACCTGACAAAAATA 228
consensus_8927#2 ------------------------AGAGGCTTATATATATGCATAGCCATAAGGAATATG 36
consensus_8927#0 CACGTAGAGGTTACTCATATTAGGGTAGAACTAGGTAACTTCAACATAATCATACAATTA 660
consensus_8927#3 ----------------------------AACTAGGTAACTTCAACATAATCATACAATTA 32
consensus_8927#1 CACGTAGAGGTTACTCATATTAGGGTAGAACTAGGTAACTTCAACATAATCATACAATTA 288
consensus_8927#2 ATCTTTCGAATGAATGATATCCTGCTAGACCAATACAACAC--ATCTTACCAAGCAACTG 94
* * * *** * * * ** *** *
consensus_8927#0 AGATTATGAAATAGACTAATGTTGAAAACATTGTA-TGGAAGTATTTTCTTT-------T 712
consensus_8927#3 AGATTATGAAATAGACTAATGTTGAAAACATTGTA-TGGAAGTATTTTCTTT-------T 84
consensus_8927#1 AGATTATGAAATAGACTAATGTTGAAAACATTGTA-TGGAAGTATTTTCTTT-------T 340
consensus_8927#2 AAATCCGAGGATCGAGGTAGTTCAGTTTACTTGTACTGAGAGCGATCTCTTTATTTTCAT 154
* ** ** ** * * ***** ** ** * ***** *
consensus_8927#0 CTTGTTCAGTCTTCATCGTCAATCATATCTTCATCATCACTTTCCTCAGCTTTAAGTTTA 772
consensus_8927#3 CTTGTTCAGTCTTCATCGTCAATCATATCTTCATCATCACTTTCCTCAGCTTTAAGTTTA 144
consensus_8927#1 CTTGTTNNNNNNNNNNNNNNNNTCATATCTTCATCATCACTTTCCTCAGCTTTAAGTTTA 400
consensus_8927#2 CTCGATCAGTTGCTTGAAGCTGCAATTTTGATAAAGCCTCTTTAGCAGATGCTAGGCGTT 214
** * * ** * * * **** ** * *
consensus_8927#0 TTTGTACTTCTATCTGAATCAACGTCTAGAA-ACTTGTAGTCACATGTAGCCATATCTAT 831
consensus_8927#3 TTTGTACTTCTATCTGAATCAACGTCTAGAA-ACTTGTAGTCACATGTAGCCATATCTAT 203
consensus_8927#1 TTTGTACTTCTATCTGAATCAACGTCTAGAA-ACTTGTAGTCACATGTAGCCATATCTAT 459
consensus_8927#2 TCTTCAGCTTTTCATAAGCGACCTTCTTGGATGCTTGT--TTGTGATTTTTGTAATCTGC 272
* * * * * * * * * *** * * ***** * * ****
consensus_8927#0 TGCCCACTGGAATTTTTCTCTTTGAGTTCTGTTAAAAATTTTCTCAA---TAGGAACGTT 888
consensus_8927#3 TGCCCACTGGAATTTTTCTCTTTGAGTTCTGTTAAAAATTTTCTCAA---TAGGAACGTT 260
consensus_8927#1 TGCCCACTGGAATTTTTCTCTTTGAGTTCTGTTAAAAATTTTCTCAA---TAGNNNNNNT 516
consensus_8927#2 TTTTATTTG---TTTAGCTTCAGACGTTATTTCCGAAATTTGCTCACGTTTTGCATCGAT 329
* ** *** ** *** * * ****** **** * * *
consensus_8927#0 ATACTTTTTACACCTTTTTCTGTA-AATTCTCCAT------------------------- 922
consensus_8927#3 ATACTTTTTACACCTTTTTAAAAGGAATACAAAATAATTACGACTTGAAAATAGATAACT 320
consensus_8927#1 ATACTTTTTACACCAAGCAACTGAAATCCGAGGATCGAGGTAGTTC------AGTTTACT 570
consensus_8927#2 CTTTTTCTGTAAATTCTCCATTGATTTTGCAAAAGATTTCGGAACTGAACGCTGATGGTT 389
* ** * * *
consensus_8927#0 ------------------------------------------------------------
consensus_8927#3 AGCAAAAACAAAGATCAACACATGTGGAGCTGATTGGGACCGAGAAAATTGAAATTGGGA 380
consensus_8927#1 TGTACTGAGAGCGATCTCTTTATTTTCATCTCGATCAGTTGCTTGAAGCTGCAATTTTGA 630
consensus_8927#2 ACAGAGAACAGCAACTGCTCGATTTGC--TCGATTATATGCCAGAAGTTTAGCAT----- 442
consensus_8927#0 ------------------------------------------
consensus_8927#3 TAATTGGTTGTAATATTACGACACGA---------------- 406
consensus_8927#1 TAAAGCCTCTTTAGCAGATGCTAGGCGTTTCTTCAGCTTTTG 672
consensus_8927#2 ------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||