These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8928#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 986 fasta sequence [CTTTTCTCGCTTGTTGTACCTCTAATTGTAATCTGAATAAATTTAAAACAGTGCGAAGGCAATGCGGATTGTATGGCAGTACTGGAGATAATTCTTTCCGTGTCTTACATCAACATATATTTCACAGGACAAACAATACTGTACAATAAATGCAAATTAGTAATCTTTCTTCTATTAGTTGACTGAAATTAACCTAACCATGTGTTAAAATATACCGACAGTGAACTGGAACCATTGTGTAAAAACGTTTATCTGCTGCGAAAGCGTCGCTTTTGCGAAGGACTCATTACAAACTAAAAGTGAAAATCAATTCTAACGAATTTTATTAATTAACTGAAAGTATGGATGCTTAAAAAATGTGACTTCATTTTATACCATATTACAGTAGTTAATAATGGATTTTCGCGAGTTGAACAAAATCAAGAAAGAAAACAAAAAGAAGCCCATACTTGTAATCAAAGATCGAAAAACTGTTCTATCGGCTTTGGATATTCAGAAGTTGTTGGGCTTGACGATTTTCCCTCAGCATTTCGTTAAATGGCCTGATTGGTGTTCTATCACCAAGCCCTCGTTTATCAAGAATATTGTTCTGATATTCATTAACAGAGTAAATACTGTGAAATCGAACGAGAAATACGGGCAACAGTTTGCTCTGATGTTTGGGGAGCCATTGAAAGTATTAGGTCCAGAAGCCTATAAGTATACATGGGACAGAGAAATTTCTACTGTCCCCAGAAGTTTCCTCACAGCTCACACAGCAGCTATGGCGGATTTAAATAAGTCAATACTAACTCCTGTTCCCCGTCGCACGTGGGTAAATGATGAAAAAACTATAGATAAAATGCGTATAATCAAATCAGTTCACGAAATAACTAAAGAACAGTTACCTTCACAGACTATTACTACTACGACTACTATTGAACCGGTAGAAAAACGCACTCCTAAAAGAAAAGCTGATACACTTTTTCCATTACCCATACCAGGTA] [+] EMBL BF937029 [CTTTTCTCGCTTGTTGTACCTCTAATTGTAATCTGAATAAATTTAAAACAGTGCGAAGGCAATGCGGATTGTATGGCAGTACTGGAGATAATTCTTTCCGTGTCTTACATCAACATATATTTCACAGGACAAACAATACTGTACAATAAATGCAAATTAGTAATCTTTCTTCTATTAGTTGACTGAAATTAACCTAACCATGTGTTAAAATATACCGACAGTGAACTGGAACCATTGTGTAAAAACGTTTATCTGCTGCGAAAGCGTCGCTTTTGCGAAGGACTCATTACAAACTAAAAGTGAAAATCAATTCTAACGAATTTTATTAATTAACTGAAAGTATGGATGCTTAAAAAATGTGACTTCATTTTATACCATATTACAGTAGTTAATAATGGATTTTCGCGAGTTGAACAAAATCAAGAAAGAAAACAAAAAGAAGCCCATACTTGTAATCAAAGATCGAAAAACTGTTCTATCGGCTTTGGATATTCAGAAGTTGTTGGGCTTGACGATTTTCCCTCAGCATTTCGTTAAATGGCCTGATTG ] [+] EMBL AI975062 [CTTTTCTCGCTTGTTGTACCTCTAATTGTAATCTGAATAAATTTAAAACAGTGCGAAGGCAATGCGGATTGTATGGCAGTACTGGAGATAATTCTTTCCGTGTCTTACATCAACATATATTTCACAGGACAAACAATACTGTACAATAAATGCAAATTAGTAATCTTTCTTCTATTAGTTGACTGAAATTAACCTAACCATGTGTTAAAATATACCGACAGTGAACTGGAACCATTGTGTAAAAACGTTTATCTGCTGCGAAAGCGTCGCTTTTGCGAAGGACTCATTACAAACTAAAAGTGAAAATCAATTCTAACGAATTTTATTAATTAACTGAAAGTATGGATGCTTAAAAAATGTGACTTCATTTTATACCATATTACAGTAGTTAATAATGGATTTTCGCGA ] [+] EMBL CD124630 [ AAACAAAAAGAAGCCCATACTTGTAATCAAAGATCGAAAAACTGTTCTATCGGCCTTGGATATTCAGAAGTTGTTGGGCTTGACGATTTTCCCTCAGCATTTCGTTAAATGGCCTGATTGGTGTTCTATCACCAAGCCCTCGTTTATCAAGAATATTGTTCTGATATTCATTAACAGAGTAAATACTGTGAAATCGAACGAGAAATACGGGCAACAGTTTGCTCTGATGTTTGGGGAGCCATTGAAAGTATTAGGTCCAGAAGCCTATAAGTATACATGGGACAGAGAAATT ] [+] EMBL CD133161 [ TTTGCTCTGATGTTTGGGGAGCCATTGAAAGTATTAAGTCCAGAAGCCTATAAGTATACATGGGACAGAGAAATTTCTACTGTCCCCAGAAGTTTCCTCACAGCTCACACAGCAGCTATGGCGGATTTAAATAAGTCAATACTAACTCCTGTTCCCCGTCGCACGTGGGTAAATGATGAAAAAACTATAGATAAAATGCGTATAATCAAATCAGTTCACGAAATAACTAAAGAACAGTTACCTTCACAGACTATTACTACTACGACTACTATTGAACCGGTAGAAAAACGCACTCCTAAAAGAAAAGCTGATACACTTTTTCC ] [+] EMBL CD158156 [ CATGGGACAGAGAAATTTCTACTGTCCCCAGAAGTTTCCTCACAGCTCACGCAGCAGCTATGGCGGATTTAAATAAGTCAAT ] [-] EMBL CD142451 [ gaAAAAAACTATAGATAAAATGCGTATAATCAAATCAGTTCACGAAATAACTAAAGAACAGTTACCTTCACAGACTATTACTACTACGACTACTATTGAACCGGTAGAAAAACGCACTCCTAAAAGAAAAGCTGATACACTTTTTCCATTACCCATACCAGGTA] consensusID : consensus_8928#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 406 fasta sequence [AATTCTAACGAATTTTATTAATTAACTGAAATAGTTAATAATGGATTTTCGCGAGTTGAACAAAATCAAGAAAGAAAACAAAAAGAAGCCCATACTTGTAATCAAAGATCGAAAAACTGTTCTATCGGCTTTGGATATTCAGAAGTTGTTGGGCTTGACGATTTTCCCTCAGCATTTCGTTAAATGGCCTGATTGGTGTTCTATCACCAAGCCCTCGTTTATCAAGAATATTGTTCTGATATTCATTAACAGAGTAAATACTGTGAAATCGAACGAGAAGTACGGGCAACAGTTTGCTCTGATGTTTGGGGAGCCATTGAAAGTATTAAGTCCAGAAGCCTATAAGTATACATGNGACAGAGAAATTTCTACTGTCCCCAGAAAGTTCCTCACAGCTCACGCAGCA] [+] EMBL CD158232 [AATTCTAACGAATTTTATTAATTAACTGAAATAGTTAATAATGGATTTTCGCGAGTTGAACAAAATCAAGAAAGAAAACAAAAAGAAGCCCATACTTGTAATCAAAGATCGAAAAACTGTTCTATCGGCTTTGGATATTCAGAAGTTGTTGGGCTTGACGATTTTCCCTCAGCATTTCGTTAAATGGCCTGATTGGTGTTCTATCACCAAGCCCTCGTTTATCAAGAATATTGTTCTGATATTCATTAACAGAGTAAATACTGTGAAATCGAACGAGAAGTACGGGCAACAGTTTGCTCTGATGTTTGGGGAGCCATTGAAAGTATTAAGTCCAGAAGCCTATAAGTATACATGNGACAGAGAAATTTCTACTGTCCCCAGAAAGTTCCTCACAGCTCACGCAGCA] [+] EMBL CD157941 [AATTCTAACGAATTTTATTAATTAACTGAAATAGTTAATAATGGATTTTCGCGAGTTGAACAAAATCAAGAAAGAAAACAGAAAGAAGCCCATACTTGTAATCAAAGATCGAAAAACTGTTCTATCGGCTTTGGATATTCAGAAGTTGTTGGGCTTGACGATTTTCCCTCAGCATTTAGCTAAATGGCCTGATTGGTGTTCTATCACCAAGCCCTCGTTTATC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8928#0 CTTTTCTCGCTTGTTGTACCTCTAATTGTAATCTGAATAAATTTAAAACAGTGCGAAGGC 60 consensus_8928#1 ------------------------------------------------------------ consensus_8928#0 AATGCGGATTGTATGGCAGTACTGGAGATAATTCTTTCCGTGTCTTACATCAACATATAT 120 consensus_8928#1 ------------------------------------------------------------ consensus_8928#0 TTCACAGGACAAACAATACTGTACAATAAATGCAAATTAGTAATCTTTCTTCTATTAGTT 180 consensus_8928#1 ------------------------------------------------------------ consensus_8928#0 GACTGAAATTAACCTAACCATGTGTTAAAATATACCGACAGTGAACTGGAACCATTGTGT 240 consensus_8928#1 ------------------------------------------------------------ consensus_8928#0 AAAAACGTTTATCTGCTGCGAAAGCGTCGCTTTTGCGAAGGACTCATTACAAACTAAAAG 300 consensus_8928#1 ------------------------------------------------------------ consensus_8928#0 TGAAAATCAATTCTAACGAATTTTATTAATTAACTGAAAGTATGGATGCTTAAAAAATGT 360 consensus_8928#1 ------------------------------------------------------AATTCT 6 ** * * consensus_8928#0 GACTTCATTTTATACCATATTACAGTAGTTAATAATGGATTTTCGCGAGTTGAACAAAAT 420 consensus_8928#1 AACGAATTTTATTAATTAACTGAAATAGTTAATAATGGATTTTCGCGAGTTGAACAAAAT 66 ** *** ** * * * *********************************** consensus_8928#0 CAAGAAAGAAAACAAAAAGAAGCCCATACTTGTAATCAAAGATCGAAAAACTGTTCTATC 480 consensus_8928#1 CAAGAAAGAAAACAAAAAGAAGCCCATACTTGTAATCAAAGATCGAAAAACTGTTCTATC 126 ************************************************************ consensus_8928#0 GGCTTTGGATATTCAGAAGTTGTTGGGCTTGACGATTTTCCCTCAGCATTTCGTTAAATG 540 consensus_8928#1 GGCTTTGGATATTCAGAAGTTGTTGGGCTTGACGATTTTCCCTCAGCATTTCGTTAAATG 186 ************************************************************ consensus_8928#0 GCCTGATTGGTGTTCTATCACCAAGCCCTCGTTTATCAAGAATATTGTTCTGATATTCAT 600 consensus_8928#1 GCCTGATTGGTGTTCTATCACCAAGCCCTCGTTTATCAAGAATATTGTTCTGATATTCAT 246 ************************************************************ consensus_8928#0 TAACAGAGTAAATACTGTGAAATCGAACGAGAAATACGGGCAACAGTTTGCTCTGATGTT 660 consensus_8928#1 TAACAGAGTAAATACTGTGAAATCGAACGAGAAGTACGGGCAACAGTTTGCTCTGATGTT 306 ********************************* ************************** consensus_8928#0 TGGGGAGCCATTGAAAGTATTAGGTCCAGAAGCCTATAAGTATACATGGGACAGAGAAAT 720 consensus_8928#1 TGGGGAGCCATTGAAAGTATTAAGTCCAGAAGCCTATAAGTATACATGNGACAGAGAAAT 366 ********************** ************************* *********** consensus_8928#0 TTCTACTGTCCCCAGAAGTTTCCTCACAGCTCACACAGCAGCTATGGCGGATTTAAATAA 780 consensus_8928#1 TTCTACTGTCCCCAGAAAGTTCCTCACAGCTCACGCAGCA-------------------- 406 ***************** *************** ***** consensus_8928#0 GTCAATACTAACTCCTGTTCCCCGTCGCACGTGGGTAAATGATGAAAAAACTATAGATAA 840 consensus_8928#1 ------------------------------------------------------------ consensus_8928#0 AATGCGTATAATCAAATCAGTTCACGAAATAACTAAAGAACAGTTACCTTCACAGACTAT 900 consensus_8928#1 ------------------------------------------------------------ consensus_8928#0 TACTACTACGACTACTATTGAACCGGTAGAAAAACGCACTCCTAAAAGAAAAGCTGATAC 960 consensus_8928#1 ------------------------------------------------------------ consensus_8928#0 ACTTTTTCCATTACCCATACCAGGTA 986 consensus_8928#1 -------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||