cluster # 8928

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Schistosoma mansoni
cluster # 8928 cluster # 8928 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8928#0 length = 986 sequences # 6

consensus_8928#1 length = 406 sequences # 2

consensusID : consensus_8928#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 986
fasta sequence

                              [CTTTTCTCGCTTGTTGTACCTCTAATTGTAATCTGAATAAATTTAAAACAGTGCGAAGGCAATGCGGATTGTATGGCAGTACTGGAGATAATTCTTTCCGTGTCTTACATCAACATATATTTCACAGGACAAACAATACTGTACAATAAATGCAAATTAGTAATCTTTCTTCTATTAGTTGACTGAAATTAACCTAACCATGTGTTAAAATATACCGACAGTGAACTGGAACCATTGTGTAAAAACGTTTATCTGCTGCGAAAGCGTCGCTTTTGCGAAGGACTCATTACAAACTAAAAGTGAAAATCAATTCTAACGAATTTTATTAATTAACTGAAAGTATGGATGCTTAAAAAATGTGACTTCATTTTATACCATATTACAGTAGTTAATAATGGATTTTCGCGAGTTGAACAAAATCAAGAAAGAAAACAAAAAGAAGCCCATACTTGTAATCAAAGATCGAAAAACTGTTCTATCGGCTTTGGATATTCAGAAGTTGTTGGGCTTGACGATTTTCCCTCAGCATTTCGTTAAATGGCCTGATTGGTGTTCTATCACCAAGCCCTCGTTTATCAAGAATATTGTTCTGATATTCATTAACAGAGTAAATACTGTGAAATCGAACGAGAAATACGGGCAACAGTTTGCTCTGATGTTTGGGGAGCCATTGAAAGTATTAGGTCCAGAAGCCTATAAGTATACATGGGACAGAGAAATTTCTACTGTCCCCAGAAGTTTCCTCACAGCTCACACAGCAGCTATGGCGGATTTAAATAAGTCAATACTAACTCCTGTTCCCCGTCGCACGTGGGTAAATGATGAAAAAACTATAGATAAAATGCGTATAATCAAATCAGTTCACGAAATAACTAAAGAACAGTTACCTTCACAGACTATTACTACTACGACTACTATTGAACCGGTAGAAAAACGCACTCCTAAAAGAAAAGCTGATACACTTTTTCCATTACCCATACCAGGTA]

[+] EMBL BF937029             [CTTTTCTCGCTTGTTGTACCTCTAATTGTAATCTGAATAAATTTAAAACAGTGCGAAGGCAATGCGGATTGTATGGCAGTACTGGAGATAATTCTTTCCGTGTCTTACATCAACATATATTTCACAGGACAAACAATACTGTACAATAAATGCAAATTAGTAATCTTTCTTCTATTAGTTGACTGAAATTAACCTAACCATGTGTTAAAATATACCGACAGTGAACTGGAACCATTGTGTAAAAACGTTTATCTGCTGCGAAAGCGTCGCTTTTGCGAAGGACTCATTACAAACTAAAAGTGAAAATCAATTCTAACGAATTTTATTAATTAACTGAAAGTATGGATGCTTAAAAAATGTGACTTCATTTTATACCATATTACAGTAGTTAATAATGGATTTTCGCGAGTTGAACAAAATCAAGAAAGAAAACAAAAAGAAGCCCATACTTGTAATCAAAGATCGAAAAACTGTTCTATCGGCTTTGGATATTCAGAAGTTGTTGGGCTTGACGATTTTCCCTCAGCATTTCGTTAAATGGCCTGATTG                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AI975062             [CTTTTCTCGCTTGTTGTACCTCTAATTGTAATCTGAATAAATTTAAAACAGTGCGAAGGCAATGCGGATTGTATGGCAGTACTGGAGATAATTCTTTCCGTGTCTTACATCAACATATATTTCACAGGACAAACAATACTGTACAATAAATGCAAATTAGTAATCTTTCTTCTATTAGTTGACTGAAATTAACCTAACCATGTGTTAAAATATACCGACAGTGAACTGGAACCATTGTGTAAAAACGTTTATCTGCTGCGAAAGCGTCGCTTTTGCGAAGGACTCATTACAAACTAAAAGTGAAAATCAATTCTAACGAATTTTATTAATTAACTGAAAGTATGGATGCTTAAAAAATGTGACTTCATTTTATACCATATTACAGTAGTTAATAATGGATTTTCGCGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD124630             [                                                                                                                                                                                                                                                                                                                                                                                                                                             AAACAAAAAGAAGCCCATACTTGTAATCAAAGATCGAAAAACTGTTCTATCGGCCTTGGATATTCAGAAGTTGTTGGGCTTGACGATTTTCCCTCAGCATTTCGTTAAATGGCCTGATTGGTGTTCTATCACCAAGCCCTCGTTTATCAAGAATATTGTTCTGATATTCATTAACAGAGTAAATACTGTGAAATCGAACGAGAAATACGGGCAACAGTTTGCTCTGATGTTTGGGGAGCCATTGAAAGTATTAGGTCCAGAAGCCTATAAGTATACATGGGACAGAGAAATT                                                                                                                                                                                                                                                                         ]
[+] EMBL CD133161             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TTTGCTCTGATGTTTGGGGAGCCATTGAAAGTATTAAGTCCAGAAGCCTATAAGTATACATGGGACAGAGAAATTTCTACTGTCCCCAGAAGTTTCCTCACAGCTCACACAGCAGCTATGGCGGATTTAAATAAGTCAATACTAACTCCTGTTCCCCGTCGCACGTGGGTAAATGATGAAAAAACTATAGATAAAATGCGTATAATCAAATCAGTTCACGAAATAACTAAAGAACAGTTACCTTCACAGACTATTACTACTACGACTACTATTGAACCGGTAGAAAAACGCACTCCTAAAAGAAAAGCTGATACACTTTTTCC                 ]
[+] EMBL CD158156             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CATGGGACAGAGAAATTTCTACTGTCCCCAGAAGTTTCCTCACAGCTCACGCAGCAGCTATGGCGGATTTAAATAAGTCAAT                                                                                                                                                                                                        ]
[-] EMBL CD142451             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      gaAAAAAACTATAGATAAAATGCGTATAATCAAATCAGTTCACGAAATAACTAAAGAACAGTTACCTTCACAGACTATTACTACTACGACTACTATTGAACCGGTAGAAAAACGCACTCCTAAAAGAAAAGCTGATACACTTTTTCCATTACCCATACCAGGTA]




>consensus_8928#0
CTTTTCTCGCTTGTTGTACCTCTAATTGTAATCTGAATAAATTTAAAACAGTGCGAAGGC
AATGCGGATTGTATGGCAGTACTGGAGATAATTCTTTCCGTGTCTTACATCAACATATAT
TTCACAGGACAAACAATACTGTACAATAAATGCAAATTAGTAATCTTTCTTCTATTAGTT
GACTGAAATTAACCTAACCATGTGTTAAAATATACCGACAGTGAACTGGAACCATTGTGT
AAAAACGTTTATCTGCTGCGAAAGCGTCGCTTTTGCGAAGGACTCATTACAAACTAAAAG
TGAAAATCAATTCTAACGAATTTTATTAATTAACTGAAAGTATGGATGCTTAAAAAATGT
GACTTCATTTTATACCATATTACAGTAGTTAATAATGGATTTTCGCGAGTTGAACAAAAT
CAAGAAAGAAAACAAAAAGAAGCCCATACTTGTAATCAAAGATCGAAAAACTGTTCTATC
GGCTTTGGATATTCAGAAGTTGTTGGGCTTGACGATTTTCCCTCAGCATTTCGTTAAATG
GCCTGATTGGTGTTCTATCACCAAGCCCTCGTTTATCAAGAATATTGTTCTGATATTCAT
TAACAGAGTAAATACTGTGAAATCGAACGAGAAATACGGGCAACAGTTTGCTCTGATGTT
TGGGGAGCCATTGAAAGTATTAGGTCCAGAAGCCTATAAGTATACATGGGACAGAGAAAT
TTCTACTGTCCCCAGAAGTTTCCTCACAGCTCACACAGCAGCTATGGCGGATTTAAATAA
GTCAATACTAACTCCTGTTCCCCGTCGCACGTGGGTAAATGATGAAAAAACTATAGATAA
AATGCGTATAATCAAATCAGTTCACGAAATAACTAAAGAACAGTTACCTTCACAGACTAT
TACTACTACGACTACTATTGAACCGGTAGAAAAACGCACTCCTAAAAGAAAAGCTGATAC
ACTTTTTCCATTACCCATACCAGGTA

consensusID : consensus_8928#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 406
fasta sequence

                              [AATTCTAACGAATTTTATTAATTAACTGAAATAGTTAATAATGGATTTTCGCGAGTTGAACAAAATCAAGAAAGAAAACAAAAAGAAGCCCATACTTGTAATCAAAGATCGAAAAACTGTTCTATCGGCTTTGGATATTCAGAAGTTGTTGGGCTTGACGATTTTCCCTCAGCATTTCGTTAAATGGCCTGATTGGTGTTCTATCACCAAGCCCTCGTTTATCAAGAATATTGTTCTGATATTCATTAACAGAGTAAATACTGTGAAATCGAACGAGAAGTACGGGCAACAGTTTGCTCTGATGTTTGGGGAGCCATTGAAAGTATTAAGTCCAGAAGCCTATAAGTATACATGNGACAGAGAAATTTCTACTGTCCCCAGAAAGTTCCTCACAGCTCACGCAGCA]

[+] EMBL CD158232             [AATTCTAACGAATTTTATTAATTAACTGAAATAGTTAATAATGGATTTTCGCGAGTTGAACAAAATCAAGAAAGAAAACAAAAAGAAGCCCATACTTGTAATCAAAGATCGAAAAACTGTTCTATCGGCTTTGGATATTCAGAAGTTGTTGGGCTTGACGATTTTCCCTCAGCATTTCGTTAAATGGCCTGATTGGTGTTCTATCACCAAGCCCTCGTTTATCAAGAATATTGTTCTGATATTCATTAACAGAGTAAATACTGTGAAATCGAACGAGAAGTACGGGCAACAGTTTGCTCTGATGTTTGGGGAGCCATTGAAAGTATTAAGTCCAGAAGCCTATAAGTATACATGNGACAGAGAAATTTCTACTGTCCCCAGAAAGTTCCTCACAGCTCACGCAGCA]
[+] EMBL CD157941             [AATTCTAACGAATTTTATTAATTAACTGAAATAGTTAATAATGGATTTTCGCGAGTTGAACAAAATCAAGAAAGAAAACAGAAAGAAGCCCATACTTGTAATCAAAGATCGAAAAACTGTTCTATCGGCTTTGGATATTCAGAAGTTGTTGGGCTTGACGATTTTCCCTCAGCATTTAGCTAAATGGCCTGATTGGTGTTCTATCACCAAGCCCTCGTTTATC                                                                                                                                                                                       ]




>consensus_8928#1
AATTCTAACGAATTTTATTAATTAACTGAAATAGTTAATAATGGATTTTCGCGAGTTGAA
CAAAATCAAGAAAGAAAACAAAAAGAAGCCCATACTTGTAATCAAAGATCGAAAAACTGT
TCTATCGGCTTTGGATATTCAGAAGTTGTTGGGCTTGACGATTTTCCCTCAGCATTTCGT
TAAATGGCCTGATTGGTGTTCTATCACCAAGCCCTCGTTTATCAAGAATATTGTTCTGAT
ATTCATTAACAGAGTAAATACTGTGAAATCGAACGAGAAGTACGGGCAACAGTTTGCTCT
GATGTTTGGGGAGCCATTGAAAGTATTAAGTCCAGAAGCCTATAAGTATACATGNGACAG
AGAAATTTCTACTGTCCCCAGAAAGTTCCTCACAGCTCACGCAGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8928#0      CTTTTCTCGCTTGTTGTACCTCTAATTGTAATCTGAATAAATTTAAAACAGTGCGAAGGC 60
consensus_8928#1      ------------------------------------------------------------
                                                                                  

consensus_8928#0      AATGCGGATTGTATGGCAGTACTGGAGATAATTCTTTCCGTGTCTTACATCAACATATAT 120
consensus_8928#1      ------------------------------------------------------------
                                                                                  

consensus_8928#0      TTCACAGGACAAACAATACTGTACAATAAATGCAAATTAGTAATCTTTCTTCTATTAGTT 180
consensus_8928#1      ------------------------------------------------------------
                                                                                  

consensus_8928#0      GACTGAAATTAACCTAACCATGTGTTAAAATATACCGACAGTGAACTGGAACCATTGTGT 240
consensus_8928#1      ------------------------------------------------------------
                                                                                  

consensus_8928#0      AAAAACGTTTATCTGCTGCGAAAGCGTCGCTTTTGCGAAGGACTCATTACAAACTAAAAG 300
consensus_8928#1      ------------------------------------------------------------
                                                                                  

consensus_8928#0      TGAAAATCAATTCTAACGAATTTTATTAATTAACTGAAAGTATGGATGCTTAAAAAATGT 360
consensus_8928#1      ------------------------------------------------------AATTCT 6
                                                                            ** * *

consensus_8928#0      GACTTCATTTTATACCATATTACAGTAGTTAATAATGGATTTTCGCGAGTTGAACAAAAT 420
consensus_8928#1      AACGAATTTTATTAATTAACTGAAATAGTTAATAATGGATTTTCGCGAGTTGAACAAAAT 66
                       **    ***  **    * *  * ***********************************

consensus_8928#0      CAAGAAAGAAAACAAAAAGAAGCCCATACTTGTAATCAAAGATCGAAAAACTGTTCTATC 480
consensus_8928#1      CAAGAAAGAAAACAAAAAGAAGCCCATACTTGTAATCAAAGATCGAAAAACTGTTCTATC 126
                      ************************************************************

consensus_8928#0      GGCTTTGGATATTCAGAAGTTGTTGGGCTTGACGATTTTCCCTCAGCATTTCGTTAAATG 540
consensus_8928#1      GGCTTTGGATATTCAGAAGTTGTTGGGCTTGACGATTTTCCCTCAGCATTTCGTTAAATG 186
                      ************************************************************

consensus_8928#0      GCCTGATTGGTGTTCTATCACCAAGCCCTCGTTTATCAAGAATATTGTTCTGATATTCAT 600
consensus_8928#1      GCCTGATTGGTGTTCTATCACCAAGCCCTCGTTTATCAAGAATATTGTTCTGATATTCAT 246
                      ************************************************************

consensus_8928#0      TAACAGAGTAAATACTGTGAAATCGAACGAGAAATACGGGCAACAGTTTGCTCTGATGTT 660
consensus_8928#1      TAACAGAGTAAATACTGTGAAATCGAACGAGAAGTACGGGCAACAGTTTGCTCTGATGTT 306
                      ********************************* **************************

consensus_8928#0      TGGGGAGCCATTGAAAGTATTAGGTCCAGAAGCCTATAAGTATACATGGGACAGAGAAAT 720
consensus_8928#1      TGGGGAGCCATTGAAAGTATTAAGTCCAGAAGCCTATAAGTATACATGNGACAGAGAAAT 366
                      ********************** ************************* ***********

consensus_8928#0      TTCTACTGTCCCCAGAAGTTTCCTCACAGCTCACACAGCAGCTATGGCGGATTTAAATAA 780
consensus_8928#1      TTCTACTGTCCCCAGAAAGTTCCTCACAGCTCACGCAGCA-------------------- 406
                      *****************  *************** *****                    

consensus_8928#0      GTCAATACTAACTCCTGTTCCCCGTCGCACGTGGGTAAATGATGAAAAAACTATAGATAA 840
consensus_8928#1      ------------------------------------------------------------
                                                                                  

consensus_8928#0      AATGCGTATAATCAAATCAGTTCACGAAATAACTAAAGAACAGTTACCTTCACAGACTAT 900
consensus_8928#1      ------------------------------------------------------------
                                                                                  

consensus_8928#0      TACTACTACGACTACTATTGAACCGGTAGAAAAACGCACTCCTAAAAGAAAAGCTGATAC 960
consensus_8928#1      ------------------------------------------------------------
                                                                                  

consensus_8928#0      ACTTTTTCCATTACCCATACCAGGTA 986
consensus_8928#1      --------------------------