cluster # 8932

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 8932 cluster # 8932 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8932#0 length = 538 sequences # 6

consensus_8932#1 length = 358 sequences # 2

consensusID : consensus_8932#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 538
fasta sequence

                              [CTCAATATCAATCACATGCCTCAAAACGAGCACATTGAGCTTCATCGCAAACGCCATGGGTATCGCTTTGACTATTTTGAAAGAAAACGGAAAAAAGAGGCTCGTGAACCTCATGAAAGAAGTCGTAAAGCCAAAAAGCTTCGTGGATTAAAGGCAAAAATTGCCAACAAAGAGAGGTTCAAAGAAAAGGTTCAGATGAAGAAAACTTTACGTATGCATGAGTTAAAAGGAAAAAACCAAAAAATCGACGAAGCTGGGCGATCTGGAGAAGTACCTGCTTATCTTTTAGATCGTGGAGAACAGATCTCTGCCAAAGTGTTATCCAACACTGTGAAGCAGAAAAAAGCTGAGAAAGCTGGAAAATGGGAGGTGCCATTACCAAAAGTAAGAAGTGTATCTGAAGCAGAGGCATTTAAAGTTGTACGAACAGGAAAGTCTAAACGTAAACCATGGAAGCGTTTGGTTACTAAAATGTGCTTCGTTGGCGATACATTTACAAGAAAACCTCCTAAATTTGAACGTTTTATTCGTCCGATGG]

[+] EMBL CD131319             [CTCAATATCAATCACATGCCTCAAAACGAGCACATTGAGCTTCATCGCAAACGCCATGGGTATCGCTTTGACTATTTTGAAAGAAAACGGAAAAAAGAGGCTCGTGAACCTCATGAAAGAAGTCGTAAAGCCAAAAAGCTTCGTGGATTAAAGGCAAAAATTGCCAACAAAGAGAGGTTCAAAGAAAAGGTTCAGATGATGAAAACTTTACGTATGCATG                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CD180737             [ TCAATATCAATCACATGCCTCAAAACGAGCACATTGAGCTTCATCGCAAACGCCATGGGTATCGCTTTGACTATTTTGAAAGAAAACGGAAAAAAGAGGCTCGTGAACCTCATGAAAGAAGTCGTAAAGCCAAAAAGCTTCGTGGATTAAAGGCAAAAATTGCCAACAAAGAGAGGTTCAAAGAAAAGGTTCAGATGAAGAAAACTTTACGTATGCATGAGTTAAAAGGAAAAAACCAAAAAATCGACGAAGCTGGGCGATCTGGAGAAGTACCTGCTTATCTTTTAGAGCGTGGAGAACAGATCTCTGCCAAAGTGTTATCCAACACTGTGAAGCAGAAAAAAG                                                                                                                                                                                                ]
[-] EMBL CD136627             [ TCAATATCAATCACATGCCTCAAAACGAGCACATTGAGCTTCATCGCAAACGCCATGGGTATCGCTTTGACTATTTTGAAAGAAAACGGAAAAAAGAGGCTCGTGAACCTCATGAAAGAAGTCGTAAAGCCAAAAAGCTTCGTGGATTAAAGGCAAAAATTGCCAACAAAGAGAGGTTCAAAGAAAAGGTTCAGATGAAG                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD188256             [                                                                                          AAAAAAGAGGCTCGTGAACCTCATGAAAGAAGTCGTAAAGCCAAGAAGCTTCGTGGATTAAAGGCAAAAATTGCCAACAAAGAGAGGTTCAAAGAAAAGGTTCAGATGAAGAAAACTTTACGTATGCATGAGTTAAAAGGAAAAAACCAAAAAATCGACGAAGCTGGGCGATCTGGAGAAGTACCTGCTTATCTTTTAGATCGTGGAGAACAGATCTCTGCCAAAGTGTTATCCAACACTGTGAAGCAGAAAAAAGCTGAGAAAGCTGGAAAATGGGAGGTGCCATTACCTAAAGTAAGAAGTGTATCTGAAGCAGAGGCATTTAAAGTTGTACGAACAGGAAAGTCTAAACGTAAACCATGGAAGCGTTTGGTTACTAAAATGTGCTTCGTTGGCGATACATTTACAAGAAAACCTCCTAAATTTGA                    ]
[+] EMBL CD133745             [                                                                                                                 TGAAAGAAGTCGTAAAGCCAAAAAGCTTCGTGGATTAAAGGCAAAAATTGCCAACAAAGAGAGGTTCAAAGAAAAGGTTCAGATGAAGAAAACTTTACGTATGCATGAGTTAAAAGGAAAGAACCAAAAAATCGACGAAGCTGGGCGATCTGGAGAAGTACCTGCTTATCTTTTAGATCGTGGAGAACAGATCTCTGCCAAAGTGTTATCCAACACTGTGAAGCAGAAAAAAGCTGAGAAAGCTGGAAAATGGGAGGTGCCATTACCAAAAGTAAGAAGTGTATCTGAAGCAGAGGCATCTAAAGTTG                                                                                                                     ]
[+] EMBL CD185588             [                                                                                                                  GAAAGAAGTCGTAAAGCCAAAAAGCTTCGTGGATTAAAGGCAAAAATTGCCAACAAAGAGAGGTTCAAAGAAAAGGTTCAGATGAAGAAAACTTTACGTATGCATGAATTAAAAGGAAAAAACCAAAAAATCGACGAAGCTGGGCGATCTGGAGAAGTACCTGCTTATCTTTTAGATCGTGGAGAACAGATCTCTGCCAAAGTGTTATCCAACACTGTGAAGCAGAAAAAAGCTGAGAAAGCTGGAAAATGGGAGGTGCCATTACCAAAAGTAAGAAGTGTATCTGAAGCAGAGGCATTTAAAGTTGTACGAACAGGAAAGTCTAAACGTAAAGCATGGAAGCGTTTGGTTACTAAAATGTGCTTCGTTGGCGATACATTTACAAGAAAACCTCCTAAATTTGAACGTTTTATTCGTCCGATGG]




>consensus_8932#0
CTCAATATCAATCACATGCCTCAAAACGAGCACATTGAGCTTCATCGCAAACGCCATGGG
TATCGCTTTGACTATTTTGAAAGAAAACGGAAAAAAGAGGCTCGTGAACCTCATGAAAGA
AGTCGTAAAGCCAAAAAGCTTCGTGGATTAAAGGCAAAAATTGCCAACAAAGAGAGGTTC
AAAGAAAAGGTTCAGATGAAGAAAACTTTACGTATGCATGAGTTAAAAGGAAAAAACCAA
AAAATCGACGAAGCTGGGCGATCTGGAGAAGTACCTGCTTATCTTTTAGATCGTGGAGAA
CAGATCTCTGCCAAAGTGTTATCCAACACTGTGAAGCAGAAAAAAGCTGAGAAAGCTGGA
AAATGGGAGGTGCCATTACCAAAAGTAAGAAGTGTATCTGAAGCAGAGGCATTTAAAGTT
GTACGAACAGGAAAGTCTAAACGTAAACCATGGAAGCGTTTGGTTACTAAAATGTGCTTC
GTTGGCGATACATTTACAAGAAAACCTCCTAAATTTGAACGTTTTATTCGTCCGATGG

consensusID : consensus_8932#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 358
fasta sequence

                              [AAGAGTTTGCAACATTTTCGCAGTTGTTCAGTCGAGATGCAACACCAAACAGCCTTTTTTGGAAAATGGGAGGTGCCATTACCAAAATTGTACGAACAGGAAAGTCTAAACGTAAAGCATGGAAGCGTTTGGTTACTAAAATGTGCTTCGTTGGCGATACATTTACAAGAAAACCTCCTAAATTTGAACGTTTTATTCGTCCGATGGGTTTACGTGTAAAGAAAGCAAATGTTACTCACCCAGAGCTTAAAACCACTTTCCAGCTTCCTATAATTGGAGTAAAGAAAAATCCAAGTTCACCAATGTATACTACCTTAGGTGTAATAACTAAAGGTACAATTATTGAGGTGAACGTCAG]

[+] EMBL CD184015             [AAGAGTTTGCAACATTTTCGCAGTTGTTCAGTCGAGATGCAACACCAAACAGCCTTTTTTGGAAAATGGGAGGTGCCATTACCAAAATTGTACGAACAGGAAAGTCTAAACGTAAAGCATGGAAGCGTTTGGTTACTAAAATGTGCTTCGTTGGCGATACATTTACAAGAAAACCTCCTAAATTTGAACGTTTTATTCGTCCGATGGGTTTACGTGTAAAGAAAGCAAATGTTACTCACCCAGAGCTTAAAACCACTTTCCAGCTTCCTATAATTGGAGTAAAGAAAAATCCAAGTTCACCAATGTATACTACCTTAGGTGTAATAACTAAAGGTACAATTATTGAGGTGAACGTCAG]
[+] EMBL CD184091             [AAGAGTTTGCAACATTTTCGCAGTTGTTCAGTCGAGATGCAACACCAAACAGCCTTTTTTGGAAAATGGGAGGTGCCATTACCAAAATTGTACGAACAGGAAAGTCTAAACGTAAAGCATGGAAGCGTTTGGTTACTAAAATGTGCTTCGTTGGCGATACATTTACAAGAAAACCTCCTAAATTTGAACGTTTTATTCGTCCGATGGGTTTACGTGTAAAGAAAGCAAATGTTACTCACCCAGAGCTTAAAACCACTTTCCAGCTTCCTATAATTGGAGTAAAGAAAAATCCAAGTTCACCAATGTATACTACCTTAGGTGTAATAACTAAAGGTACAATTATTGAGGTGAACGTCAG]




>consensus_8932#1
AAGAGTTTGCAACATTTTCGCAGTTGTTCAGTCGAGATGCAACACCAAACAGCCTTTTTT
GGAAAATGGGAGGTGCCATTACCAAAATTGTACGAACAGGAAAGTCTAAACGTAAAGCAT
GGAAGCGTTTGGTTACTAAAATGTGCTTCGTTGGCGATACATTTACAAGAAAACCTCCTA
AATTTGAACGTTTTATTCGTCCGATGGGTTTACGTGTAAAGAAAGCAAATGTTACTCACC
CAGAGCTTAAAACCACTTTCCAGCTTCCTATAATTGGAGTAAAGAAAAATCCAAGTTCAC
CAATGTATACTACCTTAGGTGTAATAACTAAAGGTACAATTATTGAGGTGAACGTCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8932#0      CTCAATATCAATCACATGCCTCAAAACGAGCACATTGAGCTTCATCGCAAACGCCATGGG 60
consensus_8932#1      ---------------------------------------------AAGAGTTTGCAACAT 15
                                                                      *     **    

consensus_8932#0      TATCGCTTTGACTATTTTGAAAGAAAACGGAAAAAAGAGGCTCGTGAACCTCATGAAAGA 120
consensus_8932#1      TTTCGCAGTTGTTCAGTCGAGATGCAACACCAAACAGCCTTTTTTGGAAA--ATGGGAGG 73
                      * ****  *   *   * ** *   ***   *** **    *  ** *    ***  ** 

consensus_8932#0      AGTCGTAAAGCCAAAAAGCTTCGTGGATTAAAGGCAAAAATTGCCAACAAAGAGAGGTTC 180
consensus_8932#1      TGCCATTA--CCAAAATTGTACGAACAGGAAAGTCTAAACGTAA-AGCATGGAAGCGTTT 130
                       * * * *  ******   * **   *  **** * ***  *   * **  **   *** 

consensus_8932#0      AA-----AGAAAAGGTTCAGATGAAGAAAACTTTACGTATGCATGAGTTAAAAGGAAAAA 235
consensus_8932#1      GGTTACTAAAATGTGCTTCGTTGGCGATACATTTACAAGAAAACCTCCTAAATTTGAACG 190
                             * **   * *  * **  ** *  *****      *     ****    **  

consensus_8932#0      ACCAAAAAATC-GACGAAGCTGGGCGATCTGGAGAAGTACCTGCTTATCTTTTAGATCGT 294
consensus_8932#1      TTTTATTCGTCCGATGGGTTTACGTG--TAAAGAAAGCAAATGTTACTCACCCAGAGCTT 248
                          *    ** ** *    *  * *        *** *  ** *  **    *** * *

consensus_8932#0      GGAGAACAGATCTCTGCCAAAGTGTTATCCAACACTGTGAAGCAGAAAA-AAGCTGAGAA 353
consensus_8932#1      --AAAACCACTTTCCAGCTTCCTATAATTGGA----GTAAAGAAAAATCCAAGTTCACCA 302
                        * ***   * **   *    * * **   *    ** *** * **   *** * *  *

consensus_8932#0      AGCTGGAAAATGGGAGGTGCCATTACCAAAAGTAAGAAGTGTATCTGAAGCAGAGGCATT 413
consensus_8932#1      ATGTATACTACCTTAGGTGTAATAACTAAAGGTACAA----TTATTGAGGTGAACGTCAG 358
                      *  *  *  *    *****  ** ** *** ***  *    *   *** *   * *    

consensus_8932#0      TAAAGTTGTACGAACAGGAAAGTCTAAACGTAAACCATGGAAGCGTTTGGTTACTAAAAT 473
consensus_8932#1      ------------------------------------------------------------
                                                                                  

consensus_8932#0      GTGCTTCGTTGGCGATACATTTACAAGAAAACCTCCTAAATTTGAACGTTTTATTCGTCC 533
consensus_8932#1      ------------------------------------------------------------
                                                                                  

consensus_8932#0      GATGG 538
consensus_8932#1      -----