Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 8937 cluster # 8937       Sequences # 8       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8937#0 length = 886 sequences # 7  
consensus_8937#1 length = 362 sequences # 1  

consensusID : consensus_8937#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 886
fasta sequence
                              [GGAATTCGTTCTCGAGGCGACTAGGTTTTGGCGCAAGAGCATTCAGGCTACAATTTTGGTCTATATACTAGACGCGAATTCAACTTAGTTTTTAAGAATATTCAGTGTTTTCAGATGTCCGCCGTAACGGATGACGAAATCATAAAGAGAAGACTCTTAATTGAAGGCGAAAGTGGAAATGATGACCGCAGAATTACACTATTACTTAAAAATTATCTTCGATGGGTAGCTTCTGATGATGTTGGTGAAGACGGCTACGAAGCTTATCAAGCCCTTATAGCTAGTGTTTACCAGTGTGAAAACGCCATGGAACAGTCGTCATTAGTAATAGCTATGAACTACGAACAGCAAAAACAGTATGAGGATTTATATAAAGAGATCGAAACGGCCATTGAAAGTGC-AAAAAATCGCATTCAACAATGTAAAGAAGATCTGAGATCCGCAAAAACTGTCAGGAAAAATAGACGAGAGTATGACAGTCTTGCCAAAGTTCTCTGTGATCATCCAGAGAGAGATGAGACACTTGAAAAATATAGAAAATTAAAAGCTACTTTAGAACGACTGGAGAATTTAAGTGAAGAGTACGACCGAAAAATTCAGCTTAGAAAAACTCAATTTCATTTATTTTTGGTTGCCCTAAAGGGTTTAC-AAAAAATTGTTGAGGATGATGATCTATCTTCAGTCAAAGATGATTTGATGCCTACACAGTCATCAAAGTCTGTACACGAAGAGATTTCTATGAAAATGGATACAACTTGAAGATTATGTATATACGTATAGTAGCCGCAAACTTTTGCCTTTATTCATTGCGAGACCTTGATTGACTTCGCTTCAATCTTGATACGATCTTTGTACGTACGTCTTGTAAATAT-AAATAT-ACATGTAA]

[+] EMBL CD077950             [GGAATTCGTTCTCGAGGCGACTAGGTTTTGGCGCAAGAGCATTCAGGCTACAATTTTGGTCTATATACTAGACGCGAATTCAACTTAGTTTTTAAGAATATTCAGTGTTTTCAGATGTCCGCCGTAACGGATGACGAAATCATAAAGAGAAGACTCTTAATTGAAGGCGAAAGTGGAAATGATGACCGCAGAATTACACTATTACTTAAAAATTATCTTCGATGGGTAGCTTCTGATGATGTTGGTGAAGACGGCTACGAAGCTTATCAAGCCCTTATAGCTAGTGTTTACCAGTGTGAAAACGCCATGTAACAGTCGTCATTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD080625             [                                                                                                               CAGATGTCCGCCGTAACGGATGACGAAATCATAAAGAGAAGACTCTTAATTGAAGGCGAAAGTGGAAATGATGACCGCAGAATTACACTATTACTTAAAAATTATCTTCGATGGGTAGCTTCTGATGATGTTGGTGAAGACGGCTACGAAGCTTATCAAGCCCTTATAGCTAGTGTTTACCAGTGTGAAAACGCCATGGAACAGTCGTCATTAGTAATAGCTATGAACTACGAACAGCAAAAACAGTATGAGGATTTATATAAAGAGATCGAAACGGCCATTGAAAGTGC AAAAAATCGCATTCAACAATGTAAAGAAGATCTGAGATCCGCAAAAACTGTCAGGAAAAATAGACGAGAGTATGACAGTCTTGCCAAAGTTCTCTGTGATCATCCAGAGAGAGATGAGACACTTGAAAAATATAGAAAATTAAAAGCTACTTTAGAACGACTGGAGAATTTAAGTGAAGAGTACGACCGAAAAATTCAGCTTAGAAAAACTCAATTTCATTTATTTTTGGTTGCCCTAAAGGGTTTAC AAAAAATTGTTGAGGATGATGATCTATCTTCAGTCAAAGATGATTTGATGCCTACACAGTCATCANAGTCTGTACACGAAGAGATTTCTATGAAAATGGATACAACTTGAAGATTATGTATATACGTATAGTAGCCGC AACTTTTGCCTTTATTCATTGCGAGACCTTGATTGACTTCGCTTCAATCTTGATACGATCTTTGTACGTACGTCTTGT AATAT AAATAT ACATGT  ]
[+] EMBL CD080626             [                                                                                                            aggCAGATGTCCGCCGTAACGGATGACGAAATCATAAAGAGAAGACTCTTAATTGAAGGCGAAAGTGGAAATGATGACCGCAGAATTACACTATTACTTAAAAATTATCTTCGATGGGTAGCTTCTGATGATGTTGGTGAAGACGGCTACGAAGCTTATCAAGCCCTTATAGCTAGTGTTTACCACTGTGAAAACGCCATGGAACAGTCGTCATTAGTAATAGCTATGAACTACGAACAGCAAAAACAGTATGAGGATTTATATAAAGAGATCGAAACGGCCATTGAAAGTGC AAAAAATCGCATTCAACAATGTAAAGAAGATCTGAGATCCGCAAAAACTGTCAGGAAAAATAGACGAGAGTATGACAGTCTTGCCAAAGTTCTCTGTGATCATCCAGAGAGAGATGAGACACTTGAAAAATATAGAAAATTAAAAGCTACTTTAGAACGACTGGAGAATTTAAGTGAAGAGTACGACCGAAAAATTCAGCTTAGAAAAACTCAATTTCATTTATTTTTGGTTGCCCTAAAGGGTTTAC AAAAAATTGTTGAGGATGATGATCTATCTTTAGTTAAAGATGATTTGAT                                                                                                                                                                                              ]
[-] EMBL CD074535             [                                                                                                                                                                                                                                     CTTCTGATGATG TGGTGAAGACGGCTACGAAGCTTATCAAGCCCTTATAGCTAGTGTTTACCAGTGTGAAAACGCCATGGAACAGTCGTCATTAGTAATAGCTATGAACTACGAACAGCAAAAACAGTATGAGGATTTATATAAAGAGATCGAAACGGCCATTGAAAGTGC AAAAAATCGCATTCAACAATGTAAAGAAGATCTGAGATCCGCAAAAACTGTCAGGAAAAATAGACGAGAGTATGACAGTCTTGCCAAAGTTCTCTGTGATCATCCAGAGAGAGATGAGACACTTGAAAAATATAGAAAATTAAAAGCTACTTTAGAACGACTGGAGAATTTAAGTGAAGAGTACGACCGAAAAATTCAGCTTAGAAAAACTCAATTTCATTTATTTTTGGTTGCCCTAAAGGGTTTAC AAAAAATTGTTGAGGATGATGATCTATCTTCAGTCAAAGATGATTTGATGCCTACACAGTCATCAAAGTCTGTACACGAAGAGATTTCTATGAAAATGGATACAACTTGAAGATTATGTATATACGTATAGTAGCCGCAAACTTTTGCCTTTATTCATTGCGAGACCTTGATTGACTTCGCTTCAATCTTGATACGATCTTTGTACGTACGTCTTGTAAATATAAAATATCACATGTAA]
[+] EMBL CD134368             [                                                                                                                                                                                                                                                                                                               GCCATGGAACATTCGTCATTAGTAATAGCTATGAACTACGATCAGCAAAAACAGTATGAGGATTTATATAAAGAGATCGAAACGGCCATTGAAAGTGC AAAAAATCGCATTCAACAATGTAAAGAAGATCTGAGATCCGCAAAAACTGTCAGGAAAAATAGACGAGAGTATGA                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CD069241             [                                                                                                                                                                                                                                                                                                                                                                 ACAGTATGAGGATTTATATAAAGAGATCGAAACGGCCATTGAAAGTGCAAAAAAATCGCATTCAACAATGTAAAGAAGATCTGAGATCCGCAAAAACTGTCAGGAAAAATAGACGAGAGTATGACAGTCTTGCCAAAGTTCTCTGTGATCATCCAGAGAGAGATGAGACACTTGAAAAATATAGAAAATTAAAAGCTACTTTAGAACGACTGGAGAATTTAAGTGAAGAGTACGACCGAAAAATTCAGCTTAGAAAAACTCAATTTCATTTATTTTTGGTTGCCCTAAAGGGTTTACAAAAAAATTGTTGAGGATGATGATCTATCTTCAGTCAAAGATGATTTGATGCCTACACAGTCATCAAAGTCTGTACACGAAGAGATTTCTATGAAAATGGATACAACTTGAAGATTATGTATATACAAGTAGTA                                                                                                          ]
[-] EMBL CD077234             [                                                                                                                                                                                                                                                                                                                                                                                        AGATCGAAACGGCCATTGAAAGTGC AAAAAATCGCATTCAACAATGTAAAGAAGATCTGAGATCCGCAAAAACTGTCAGGAAAAATAGACGAGAGTATGACAGTCTTGCCAAAGTTCTCTGTGATCATCCAGAGAGAGATGAGACACTTGAAAAATATAGAAAATTAAAAGCTACTTTAGAACGACTGGAGAATTTAAGTGAAGAGTACGACCGAAAAATTCAGCTTAGAAAAACTCAATTTCATTTATTTTTGGTTGCCCTAAAGGGTTTAC AAAAAATTGTTGAGGATGATGATCTATCTTCAGTCAAAGATGATTTGATGCCTACACAGTCATCAAAGTCTGTACACGAAGAGATTTCTATGAAAATGGATACAACTTGAAGATTATGTATATACGTATAGTAGCCGCAAACTTTTGCCTTTATTCATTGCGAGACCTTGATTGACTTCGCTTCAATCTTGATACGATCTTTGTACGTACGTCTTGTAAATAT AAAat          ]


>consensus_8937#0 GGAATTCGTTCTCGAGGCGACTAGGTTTTGGCGCAAGAGCATTCAGGCTACAATTTTGGT CTATATACTAGACGCGAATTCAACTTAGTTTTTAAGAATATTCAGTGTTTTCAGATGTCC GCCGTAACGGATGACGAAATCATAAAGAGAAGACTCTTAATTGAAGGCGAAAGTGGAAAT GATGACCGCAGAATTACACTATTACTTAAAAATTATCTTCGATGGGTAGCTTCTGATGAT GTTGGTGAAGACGGCTACGAAGCTTATCAAGCCCTTATAGCTAGTGTTTACCAGTGTGAA AACGCCATGGAACAGTCGTCATTAGTAATAGCTATGAACTACGAACAGCAAAAACAGTAT GAGGATTTATATAAAGAGATCGAAACGGCCATTGAAAGTGCAAAAAATCGCATTCAACAA TGTAAAGAAGATCTGAGATCCGCAAAAACTGTCAGGAAAAATAGACGAGAGTATGACAGT CTTGCCAAAGTTCTCTGTGATCATCCAGAGAGAGATGAGACACTTGAAAAATATAGAAAA TTAAAAGCTACTTTAGAACGACTGGAGAATTTAAGTGAAGAGTACGACCGAAAAATTCAG CTTAGAAAAACTCAATTTCATTTATTTTTGGTTGCCCTAAAGGGTTTACAAAAAATTGTT GAGGATGATGATCTATCTTCAGTCAAAGATGATTTGATGCCTACACAGTCATCAAAGTCT GTACACGAAGAGATTTCTATGAAAATGGATACAACTTGAAGATTATGTATATACGTATAG TAGCCGCAAACTTTTGCCTTTATTCATTGCGAGACCTTGATTGACTTCGCTTCAATCTTG ATACGATCTTTGTACGTACGTCTTGTAAATATAAATATACATGTAA



consensusID : consensus_8937#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 362
fasta sequence
                              [CTCGCAGGCCGNAATTCGGCACGAGGATATACTAGACGCGAATTCAACTTAGTTTTTAAGAATATTCAGTGTTTTCAGATGTCCGCCGTAACGGATGACGAAATCATAAAGAGAAGACTCTTAATTGAAGGCGAAAGTGGAAATGATGACCGCAGAATTACACTATTACTTAAAAATTATCTTCGATGGGTAGCTTCTGATGATGTTGGTGAAGACGGCTACGAAGCTTATCAAGCCCTTATAGCTAGTGTTTACCAGTGTGAAAACGCCATGGAACAGTCGTCATTAGTAATAGCTATGAACTACGAACAGCANANACAGTATGAGGATTTATATAAAGAGATCGAAACGGCCATTGAAAG]

[+] EMBL CD077685             [CTCGCAGGCCGNAATTCGGCACGAGGATATACTAGACGCGAATTCAACTTAGTTTTTAAGAATATTCAGTGTTTTCAGATGTCCGCCGTAACGGATGACGAAATCATAAAGAGAAGACTCTTAATTGAAGGCGAAAGTGGAAATGATGACCGCAGAATTACACTATTACTTAAAAATTATCTTCGATGGGTAGCTTCTGATGATGTTGGTGAAGACGGCTACGAAGCTTATCAAGCCCTTATAGCTAGTGTTTACCAGTGTGAAAACGCCATGGAACAGTCGTCATTAGTAATAGCTATGAACTACGAACAGCANANACAGTATGAGGATTTATATAAAGAGATCGAAACGGCCATTGAAAG]


>consensus_8937#1 CTCGCAGGCCGNAATTCGGCACGAGGATATACTAGACGCGAATTCAACTTAGTTTTTAAG AATATTCAGTGTTTTCAGATGTCCGCCGTAACGGATGACGAAATCATAAAGAGAAGACTC TTAATTGAAGGCGAAAGTGGAAATGATGACCGCAGAATTACACTATTACTTAAAAATTAT CTTCGATGGGTAGCTTCTGATGATGTTGGTGAAGACGGCTACGAAGCTTATCAAGCCCTT ATAGCTAGTGTTTACCAGTGTGAAAACGCCATGGAACAGTCGTCATTAGTAATAGCTATG AACTACGAACAGCANANACAGTATGAGGATTTATATAAAGAGATCGAAACGGCCATTGAA AG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8937#0      GGAATTCGTTCTCGAGGCGACTAGGTTTTGGCGCAAGAGCATTCAGGCTACAATTTTGGT 60
consensus_8937#1      ---------------------------------------CTCGCAGGCCGNAATTCGGCA 21
                                                             *   *****   ****  *  

consensus_8937#0      CTA---TATACTAGACGCGAATTCAACTTAGTTTTTAAGAATATTCAGTGTTTTCAGATG 117
consensus_8937#1      CGAGGATATACTAGACGCGAATTCAACTTAGTTTTTAAGAATATTCAGTGTTTTCAGATG 81
                      * *   ******************************************************

consensus_8937#0      TCCGCCGTAACGGATGACGAAATCATAAAGAGAAGACTCTTAATTGAAGGCGAAAGTGGA 177
consensus_8937#1      TCCGCCGTAACGGATGACGAAATCATAAAGAGAAGACTCTTAATTGAAGGCGAAAGTGGA 141
                      ************************************************************

consensus_8937#0      AATGATGACCGCAGAATTACACTATTACTTAAAAATTATCTTCGATGGGTAGCTTCTGAT 237
consensus_8937#1      AATGATGACCGCAGAATTACACTATTACTTAAAAATTATCTTCGATGGGTAGCTTCTGAT 201
                      ************************************************************

consensus_8937#0      GATGTTGGTGAAGACGGCTACGAAGCTTATCAAGCCCTTATAGCTAGTGTTTACCAGTGT 297
consensus_8937#1      GATGTTGGTGAAGACGGCTACGAAGCTTATCAAGCCCTTATAGCTAGTGTTTACCAGTGT 261
                      ************************************************************

consensus_8937#0      GAAAACGCCATGGAACAGTCGTCATTAGTAATAGCTATGAACTACGAACAGCAAAAACAG 357
consensus_8937#1      GAAAACGCCATGGAACAGTCGTCATTAGTAATAGCTATGAACTACGAACAGCANANACAG 321
                      ***************************************************** * ****

consensus_8937#0      TATGAGGATTTATATAAAGAGATCGAAACGGCCATTGAAAGTGCAAAAAATCGCATTCAA 417
consensus_8937#1      TATGAGGATTTATATAAAGAGATCGAAACGGCCATTGAAAG------------------- 362
                      *****************************************                   

consensus_8937#0      CAATGTAAAGAAGATCTGAGATCCGCAAAAACTGTCAGGAAAAATAGACGAGAGTATGAC 477
consensus_8937#1      ------------------------------------------------------------
                                                                                  

consensus_8937#0      AGTCTTGCCAAAGTTCTCTGTGATCATCCAGAGAGAGATGAGACACTTGAAAAATATAGA 537
consensus_8937#1      ------------------------------------------------------------
                                                                                  

consensus_8937#0      AAATTAAAAGCTACTTTAGAACGACTGGAGAATTTAAGTGAAGAGTACGACCGAAAAATT 597
consensus_8937#1      ------------------------------------------------------------
                                                                                  

consensus_8937#0      CAGCTTAGAAAAACTCAATTTCATTTATTTTTGGTTGCCCTAAAGGGTTTACAAAAAATT 657
consensus_8937#1      ------------------------------------------------------------
                                                                                  

consensus_8937#0      GTTGAGGATGATGATCTATCTTCAGTCAAAGATGATTTGATGCCTACACAGTCATCAAAG 717
consensus_8937#1      ------------------------------------------------------------
                                                                                  

consensus_8937#0      TCTGTACACGAAGAGATTTCTATGAAAATGGATACAACTTGAAGATTATGTATATACGTA 777
consensus_8937#1      ------------------------------------------------------------
                                                                                  

consensus_8937#0      TAGTAGCCGCAAACTTTTGCCTTTATTCATTGCGAGACCTTGATTGACTTCGCTTCAATC 837
consensus_8937#1      ------------------------------------------------------------
                                                                                  

consensus_8937#0      TTGATACGATCTTTGTACGTACGTCTTGTAAATATAAATATACATGTAA 886
consensus_8937#1      -------------------------------------------------
                                                                       




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)