|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8937#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 886 fasta sequence
[GGAATTCGTTCTCGAGGCGACTAGGTTTTGGCGCAAGAGCATTCAGGCTACAATTTTGGTCTATATACTAGACGCGAATTCAACTTAGTTTTTAAGAATATTCAGTGTTTTCAGATGTCCGCCGTAACGGATGACGAAATCATAAAGAGAAGACTCTTAATTGAAGGCGAAAGTGGAAATGATGACCGCAGAATTACACTATTACTTAAAAATTATCTTCGATGGGTAGCTTCTGATGATGTTGGTGAAGACGGCTACGAAGCTTATCAAGCCCTTATAGCTAGTGTTTACCAGTGTGAAAACGCCATGGAACAGTCGTCATTAGTAATAGCTATGAACTACGAACAGCAAAAACAGTATGAGGATTTATATAAAGAGATCGAAACGGCCATTGAAAGTGC-AAAAAATCGCATTCAACAATGTAAAGAAGATCTGAGATCCGCAAAAACTGTCAGGAAAAATAGACGAGAGTATGACAGTCTTGCCAAAGTTCTCTGTGATCATCCAGAGAGAGATGAGACACTTGAAAAATATAGAAAATTAAAAGCTACTTTAGAACGACTGGAGAATTTAAGTGAAGAGTACGACCGAAAAATTCAGCTTAGAAAAACTCAATTTCATTTATTTTTGGTTGCCCTAAAGGGTTTAC-AAAAAATTGTTGAGGATGATGATCTATCTTCAGTCAAAGATGATTTGATGCCTACACAGTCATCAAAGTCTGTACACGAAGAGATTTCTATGAAAATGGATACAACTTGAAGATTATGTATATACGTATAGTAGCCGCAAACTTTTGCCTTTATTCATTGCGAGACCTTGATTGACTTCGCTTCAATCTTGATACGATCTTTGTACGTACGTCTTGTAAATAT-AAATAT-ACATGTAA]
[+] EMBL CD077950 [GGAATTCGTTCTCGAGGCGACTAGGTTTTGGCGCAAGAGCATTCAGGCTACAATTTTGGTCTATATACTAGACGCGAATTCAACTTAGTTTTTAAGAATATTCAGTGTTTTCAGATGTCCGCCGTAACGGATGACGAAATCATAAAGAGAAGACTCTTAATTGAAGGCGAAAGTGGAAATGATGACCGCAGAATTACACTATTACTTAAAAATTATCTTCGATGGGTAGCTTCTGATGATGTTGGTGAAGACGGCTACGAAGCTTATCAAGCCCTTATAGCTAGTGTTTACCAGTGTGAAAACGCCATGTAACAGTCGTCATTA ]
[+] EMBL CD080625 [ CAGATGTCCGCCGTAACGGATGACGAAATCATAAAGAGAAGACTCTTAATTGAAGGCGAAAGTGGAAATGATGACCGCAGAATTACACTATTACTTAAAAATTATCTTCGATGGGTAGCTTCTGATGATGTTGGTGAAGACGGCTACGAAGCTTATCAAGCCCTTATAGCTAGTGTTTACCAGTGTGAAAACGCCATGGAACAGTCGTCATTAGTAATAGCTATGAACTACGAACAGCAAAAACAGTATGAGGATTTATATAAAGAGATCGAAACGGCCATTGAAAGTGC AAAAAATCGCATTCAACAATGTAAAGAAGATCTGAGATCCGCAAAAACTGTCAGGAAAAATAGACGAGAGTATGACAGTCTTGCCAAAGTTCTCTGTGATCATCCAGAGAGAGATGAGACACTTGAAAAATATAGAAAATTAAAAGCTACTTTAGAACGACTGGAGAATTTAAGTGAAGAGTACGACCGAAAAATTCAGCTTAGAAAAACTCAATTTCATTTATTTTTGGTTGCCCTAAAGGGTTTAC AAAAAATTGTTGAGGATGATGATCTATCTTCAGTCAAAGATGATTTGATGCCTACACAGTCATCANAGTCTGTACACGAAGAGATTTCTATGAAAATGGATACAACTTGAAGATTATGTATATACGTATAGTAGCCGC AACTTTTGCCTTTATTCATTGCGAGACCTTGATTGACTTCGCTTCAATCTTGATACGATCTTTGTACGTACGTCTTGT AATAT AAATAT ACATGT ]
[+] EMBL CD080626 [ aggCAGATGTCCGCCGTAACGGATGACGAAATCATAAAGAGAAGACTCTTAATTGAAGGCGAAAGTGGAAATGATGACCGCAGAATTACACTATTACTTAAAAATTATCTTCGATGGGTAGCTTCTGATGATGTTGGTGAAGACGGCTACGAAGCTTATCAAGCCCTTATAGCTAGTGTTTACCACTGTGAAAACGCCATGGAACAGTCGTCATTAGTAATAGCTATGAACTACGAACAGCAAAAACAGTATGAGGATTTATATAAAGAGATCGAAACGGCCATTGAAAGTGC AAAAAATCGCATTCAACAATGTAAAGAAGATCTGAGATCCGCAAAAACTGTCAGGAAAAATAGACGAGAGTATGACAGTCTTGCCAAAGTTCTCTGTGATCATCCAGAGAGAGATGAGACACTTGAAAAATATAGAAAATTAAAAGCTACTTTAGAACGACTGGAGAATTTAAGTGAAGAGTACGACCGAAAAATTCAGCTTAGAAAAACTCAATTTCATTTATTTTTGGTTGCCCTAAAGGGTTTAC AAAAAATTGTTGAGGATGATGATCTATCTTTAGTTAAAGATGATTTGAT ]
[-] EMBL CD074535 [ CTTCTGATGATG TGGTGAAGACGGCTACGAAGCTTATCAAGCCCTTATAGCTAGTGTTTACCAGTGTGAAAACGCCATGGAACAGTCGTCATTAGTAATAGCTATGAACTACGAACAGCAAAAACAGTATGAGGATTTATATAAAGAGATCGAAACGGCCATTGAAAGTGC AAAAAATCGCATTCAACAATGTAAAGAAGATCTGAGATCCGCAAAAACTGTCAGGAAAAATAGACGAGAGTATGACAGTCTTGCCAAAGTTCTCTGTGATCATCCAGAGAGAGATGAGACACTTGAAAAATATAGAAAATTAAAAGCTACTTTAGAACGACTGGAGAATTTAAGTGAAGAGTACGACCGAAAAATTCAGCTTAGAAAAACTCAATTTCATTTATTTTTGGTTGCCCTAAAGGGTTTAC AAAAAATTGTTGAGGATGATGATCTATCTTCAGTCAAAGATGATTTGATGCCTACACAGTCATCAAAGTCTGTACACGAAGAGATTTCTATGAAAATGGATACAACTTGAAGATTATGTATATACGTATAGTAGCCGCAAACTTTTGCCTTTATTCATTGCGAGACCTTGATTGACTTCGCTTCAATCTTGATACGATCTTTGTACGTACGTCTTGTAAATATAAAATATCACATGTAA]
[+] EMBL CD134368 [ GCCATGGAACATTCGTCATTAGTAATAGCTATGAACTACGATCAGCAAAAACAGTATGAGGATTTATATAAAGAGATCGAAACGGCCATTGAAAGTGC AAAAAATCGCATTCAACAATGTAAAGAAGATCTGAGATCCGCAAAAACTGTCAGGAAAAATAGACGAGAGTATGA ]
[-] EMBL CD069241 [ ACAGTATGAGGATTTATATAAAGAGATCGAAACGGCCATTGAAAGTGCAAAAAAATCGCATTCAACAATGTAAAGAAGATCTGAGATCCGCAAAAACTGTCAGGAAAAATAGACGAGAGTATGACAGTCTTGCCAAAGTTCTCTGTGATCATCCAGAGAGAGATGAGACACTTGAAAAATATAGAAAATTAAAAGCTACTTTAGAACGACTGGAGAATTTAAGTGAAGAGTACGACCGAAAAATTCAGCTTAGAAAAACTCAATTTCATTTATTTTTGGTTGCCCTAAAGGGTTTACAAAAAAATTGTTGAGGATGATGATCTATCTTCAGTCAAAGATGATTTGATGCCTACACAGTCATCAAAGTCTGTACACGAAGAGATTTCTATGAAAATGGATACAACTTGAAGATTATGTATATACAAGTAGTA ]
[-] EMBL CD077234 [ AGATCGAAACGGCCATTGAAAGTGC AAAAAATCGCATTCAACAATGTAAAGAAGATCTGAGATCCGCAAAAACTGTCAGGAAAAATAGACGAGAGTATGACAGTCTTGCCAAAGTTCTCTGTGATCATCCAGAGAGAGATGAGACACTTGAAAAATATAGAAAATTAAAAGCTACTTTAGAACGACTGGAGAATTTAAGTGAAGAGTACGACCGAAAAATTCAGCTTAGAAAAACTCAATTTCATTTATTTTTGGTTGCCCTAAAGGGTTTAC AAAAAATTGTTGAGGATGATGATCTATCTTCAGTCAAAGATGATTTGATGCCTACACAGTCATCAAAGTCTGTACACGAAGAGATTTCTATGAAAATGGATACAACTTGAAGATTATGTATATACGTATAGTAGCCGCAAACTTTTGCCTTTATTCATTGCGAGACCTTGATTGACTTCGCTTCAATCTTGATACGATCTTTGTACGTACGTCTTGTAAATAT AAAat ]
consensusID : consensus_8937#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 362 fasta sequence
[CTCGCAGGCCGNAATTCGGCACGAGGATATACTAGACGCGAATTCAACTTAGTTTTTAAGAATATTCAGTGTTTTCAGATGTCCGCCGTAACGGATGACGAAATCATAAAGAGAAGACTCTTAATTGAAGGCGAAAGTGGAAATGATGACCGCAGAATTACACTATTACTTAAAAATTATCTTCGATGGGTAGCTTCTGATGATGTTGGTGAAGACGGCTACGAAGCTTATCAAGCCCTTATAGCTAGTGTTTACCAGTGTGAAAACGCCATGGAACAGTCGTCATTAGTAATAGCTATGAACTACGAACAGCANANACAGTATGAGGATTTATATAAAGAGATCGAAACGGCCATTGAAAG]
[+] EMBL CD077685 [CTCGCAGGCCGNAATTCGGCACGAGGATATACTAGACGCGAATTCAACTTAGTTTTTAAGAATATTCAGTGTTTTCAGATGTCCGCCGTAACGGATGACGAAATCATAAAGAGAAGACTCTTAATTGAAGGCGAAAGTGGAAATGATGACCGCAGAATTACACTATTACTTAAAAATTATCTTCGATGGGTAGCTTCTGATGATGTTGGTGAAGACGGCTACGAAGCTTATCAAGCCCTTATAGCTAGTGTTTACCAGTGTGAAAACGCCATGGAACAGTCGTCATTAGTAATAGCTATGAACTACGAACAGCANANACAGTATGAGGATTTATATAAAGAGATCGAAACGGCCATTGAAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8937#0 GGAATTCGTTCTCGAGGCGACTAGGTTTTGGCGCAAGAGCATTCAGGCTACAATTTTGGT 60
consensus_8937#1 ---------------------------------------CTCGCAGGCCGNAATTCGGCA 21
* ***** **** *
consensus_8937#0 CTA---TATACTAGACGCGAATTCAACTTAGTTTTTAAGAATATTCAGTGTTTTCAGATG 117
consensus_8937#1 CGAGGATATACTAGACGCGAATTCAACTTAGTTTTTAAGAATATTCAGTGTTTTCAGATG 81
* * ******************************************************
consensus_8937#0 TCCGCCGTAACGGATGACGAAATCATAAAGAGAAGACTCTTAATTGAAGGCGAAAGTGGA 177
consensus_8937#1 TCCGCCGTAACGGATGACGAAATCATAAAGAGAAGACTCTTAATTGAAGGCGAAAGTGGA 141
************************************************************
consensus_8937#0 AATGATGACCGCAGAATTACACTATTACTTAAAAATTATCTTCGATGGGTAGCTTCTGAT 237
consensus_8937#1 AATGATGACCGCAGAATTACACTATTACTTAAAAATTATCTTCGATGGGTAGCTTCTGAT 201
************************************************************
consensus_8937#0 GATGTTGGTGAAGACGGCTACGAAGCTTATCAAGCCCTTATAGCTAGTGTTTACCAGTGT 297
consensus_8937#1 GATGTTGGTGAAGACGGCTACGAAGCTTATCAAGCCCTTATAGCTAGTGTTTACCAGTGT 261
************************************************************
consensus_8937#0 GAAAACGCCATGGAACAGTCGTCATTAGTAATAGCTATGAACTACGAACAGCAAAAACAG 357
consensus_8937#1 GAAAACGCCATGGAACAGTCGTCATTAGTAATAGCTATGAACTACGAACAGCANANACAG 321
***************************************************** * ****
consensus_8937#0 TATGAGGATTTATATAAAGAGATCGAAACGGCCATTGAAAGTGCAAAAAATCGCATTCAA 417
consensus_8937#1 TATGAGGATTTATATAAAGAGATCGAAACGGCCATTGAAAG------------------- 362
*****************************************
consensus_8937#0 CAATGTAAAGAAGATCTGAGATCCGCAAAAACTGTCAGGAAAAATAGACGAGAGTATGAC 477
consensus_8937#1 ------------------------------------------------------------
consensus_8937#0 AGTCTTGCCAAAGTTCTCTGTGATCATCCAGAGAGAGATGAGACACTTGAAAAATATAGA 537
consensus_8937#1 ------------------------------------------------------------
consensus_8937#0 AAATTAAAAGCTACTTTAGAACGACTGGAGAATTTAAGTGAAGAGTACGACCGAAAAATT 597
consensus_8937#1 ------------------------------------------------------------
consensus_8937#0 CAGCTTAGAAAAACTCAATTTCATTTATTTTTGGTTGCCCTAAAGGGTTTACAAAAAATT 657
consensus_8937#1 ------------------------------------------------------------
consensus_8937#0 GTTGAGGATGATGATCTATCTTCAGTCAAAGATGATTTGATGCCTACACAGTCATCAAAG 717
consensus_8937#1 ------------------------------------------------------------
consensus_8937#0 TCTGTACACGAAGAGATTTCTATGAAAATGGATACAACTTGAAGATTATGTATATACGTA 777
consensus_8937#1 ------------------------------------------------------------
consensus_8937#0 TAGTAGCCGCAAACTTTTGCCTTTATTCATTGCGAGACCTTGATTGACTTCGCTTCAATC 837
consensus_8937#1 ------------------------------------------------------------
consensus_8937#0 TTGATACGATCTTTGTACGTACGTCTTGTAAATATAAATATACATGTAA 886
consensus_8937#1 -------------------------------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||