cluster # 8938

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Schistosoma mansoni
cluster # 8938 cluster # 8938 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8938#0 length = 740 sequences # 5

consensus_8938#1 length = 605 sequences # 3

consensusID : consensus_8938#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 740
fasta sequence

                              [TTTCAATCTTCAGATCTAGGCATTTTATTCGCTTGTGAATCAACGTCTCTGACAATGGGGTTCCCTCACATTCCGATGTGATACTATCCTCCGACGTTTCACCGACACCATTCACGTGATTCGTGTTCGCCTGATCTCTCGTTCCACTCAACTCTAGACAGCTCTCCTCGTCCTCACTCGACACTGATAAATCAATTGTTGCAGTCACAGGATTGCGACTCGGTTGGTCCGATGATGGCTTCGACATATTCACTTCTCGAACAGGAGATACGGATGCAGTATGGGCTCTCACCACTCCGAACGAGATACATGACACAGGTGTCAGTAAGGCAACTCGGTTAATCGCCACCTCACCAACCATGTTGTTGGTGGTAGTGGTTGGCTGAAGCACTGCAACATCATGTGGAATGGCCAGTTGTTGAGACATGTGAGCTGTTGAGAATGCGTTGAGGATTTTGGGACCAGTTGTGTTTGGGGGATTCGGTTGCACGTGGTTTGTAGGAGGACTGAGTGATGGTGTGGCAAGTTTGGAGGTGATGCTTACCACTGGTGACGGGGTCAGTGTAGGCAAGTTGGGTCGATGCACACTCGACTGGTTCTCGGTCACCTGAATTCAATCGAAACAATTAGCACGTCATCGGGTAAGGCAAACCTACCGAACCAATGTGTCCGTTCACGTGTGCATTTGCATTGGAACTGGAGAGTGGAGTGTGGTTCGAGGGATTTCAATGGAATTGGGA]

[+] EMBL CD146456             [TTTCAATCTTCAGATCTAGGCATTTTATTCGCTTGTGAATCAACGTCTCTGACAATGGGGTTCCCTCACATTCCGATGTGATACTATCCTCCGACGTTTCACCGACACCATTCACGTGATTCGTGTTCGCCTGATCTCTCGTTCCACTCAACTCTAGACAGCTCTCCTCGTCCTCACTCGACACTGATAAATCAATTGTTGCAGTCACAGGATTGCGACTCGGTTGGTCCGATGATGGCTTCGACATATTCACTTCTCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD086335             [                                                                                        CTCCGACGTTTCACCGACACCATTCACGTGATTCGTGTTCGCCTGATCTCTCGTTCCACTCAACTCTAGACAGCTCTCCTCGTCCTCACTCGACACTGATAAATCAATTGTTGCAGTCACAGGATTGCGACTCGGTTGGTCCGATGATGGCTTCGACATATTCACTTCTCGAACAGGAGATACGGATGCAGTATGGGCTCTCACCACTCCGAACGAGATACATGACACAGGTGTCAGTAAGGCAACTCGGTTAATCGCCACCTCACCAACCATGTTGTTGGTGGTAGTGGTTGGCTGAAGCACTGCAACATCATGTGGAATGGCCAGTTGTTGAGACATGTGAGCTGTTGAGAATGCGTTGAGGATTTTGGGACCAGTTGTGTTTGGGGGATTCGGTTGCACGTGGTTTGTAGGAGGACTGAGTGATGGTGTGGCAAGTTTGGAGGTGATGCTTACCACTGGTGACGGGGTCAGTGTAGGCAAGTTGGGTCGATGCACACTCGACTGGTTCTCGGTCACCTGAATTCAATCGAAACAATTAGCACGTCATCGGGTAAGGCAAACCTACCGAACCAATGTGTCCGTTCACGTGTGCATTTGCATTGGAACTGGAGAGTGGAGTGTGGTTCGAGGGATTTCAATGGAATTGGGA]
[+] EMBL CD086311             [                                                                                        CTCCGACGTTTCACCGACACCATTCACGTGATTCGTGTTCGCCTGATCTCTCGTTCCACTCAACTCTAGACAGCTCTCCTCGTCCTCACTCGACACTGATAAATCAATTGTTGCAGTCACAGGATTGCGACTCGGTTGGTCCGATGATGGCTTCGACATATTCACTTCTCGAACAGGAGATACGGATGCAGTATGGGCTCTCACCACTCCGAACGAGATACATGACACAGGTGTCAGTAAGGCAACTCGGTTAATCGCCACCTCACCAACCATGTTGTTGGTGGTAGTGGTTGGCTGAAGCACTGCAACATCATGTGGAATGGCCAGTTGTTGAGACATGTGAGCTGTTGAGAATGCGTTGAGGATTTTGGGACCAGTTGTGTTTGGGGGATTCGGTTGCACGTGGTTTGTAGGAGGACTGAGTGATGGTGTGGCAAGTTTGGAGGTGATGCTTACCACTGGTGACGGGGTCAGTGTAGGCAAGTTGGGTCGATGCACACTCGACTGGTTCTCGGTCACCTGAATTCAATCGAAACAATTAGCACGTCATCGGGGTAGGCANACCTACCGAACCAATGTGTCCGTT                                                                  ]
[+] EMBL CD086339             [                                                                                        CTCCGACGTTTCACCGACACCATTCACGTGATTCGTGTTCGCCTGATCTCTCGTTCCACTCAACTCTAGACAGCTCTCCTCGTCCTCACTCGACACTGATAAATCAATTGTTGCAGTCACAGGATTGCGACTCGGTTGGTCCGATGATGGCTTCGACATATTCACTTCTCGAACAGGAGATACGGATGCAGTATGGGCTCTCACCACTCCGAACGAGATACATGACACAGGTGTCAGTAAGGCAACTCGGTTAATCGCCACCTCACCAACCATGTTGTTGGTGGTAGTGGTTGGCTGAAGCACTGCAACATCATGTGGAATGGCCAGTTGTTGA                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD138128             [                                                                                                                                                                                                                                                                                                                                                                                                                                                  GTTGAGAATGCGTTGAGGATTTTGGGACCAGTTGTGTTTGGGGGATTCGGTTGCACGTGGTTTGTAGGAGGACTGAGTGATGGTGTGGCAAGTTTGGAGGTGATGCTTACCACTGGTGACGGGGTCAGTGTAGGCAAGTTGGGTCGATGCACACTCGACTGGTTCTCGGTCACCTGAATTCAATCGAAA                                                                                                                     ]




>consensus_8938#0
TTTCAATCTTCAGATCTAGGCATTTTATTCGCTTGTGAATCAACGTCTCTGACAATGGGG
TTCCCTCACATTCCGATGTGATACTATCCTCCGACGTTTCACCGACACCATTCACGTGAT
TCGTGTTCGCCTGATCTCTCGTTCCACTCAACTCTAGACAGCTCTCCTCGTCCTCACTCG
ACACTGATAAATCAATTGTTGCAGTCACAGGATTGCGACTCGGTTGGTCCGATGATGGCT
TCGACATATTCACTTCTCGAACAGGAGATACGGATGCAGTATGGGCTCTCACCACTCCGA
ACGAGATACATGACACAGGTGTCAGTAAGGCAACTCGGTTAATCGCCACCTCACCAACCA
TGTTGTTGGTGGTAGTGGTTGGCTGAAGCACTGCAACATCATGTGGAATGGCCAGTTGTT
GAGACATGTGAGCTGTTGAGAATGCGTTGAGGATTTTGGGACCAGTTGTGTTTGGGGGAT
TCGGTTGCACGTGGTTTGTAGGAGGACTGAGTGATGGTGTGGCAAGTTTGGAGGTGATGC
TTACCACTGGTGACGGGGTCAGTGTAGGCAAGTTGGGTCGATGCACACTCGACTGGTTCT
CGGTCACCTGAATTCAATCGAAACAATTAGCACGTCATCGGGTAAGGCAAACCTACCGAA
CCAATGTGTCCGTTCACGTGTGCATTTGCATTGGAACTGGAGAGTGGAGTGTGGTTCGAG
GGATTTCAATGGAATTGGGA

consensusID : consensus_8938#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 605
fasta sequence

                              [CTCCGACGTTTCACCCAAATCATTCACATGATTCGTGTTCGCCTGATCTCTCGTTCCACTCAACTCTAGACAGCTCTCCTCGTCCTCACTCGACACTGATAAATCAATTGTTGCAGTCACAGGATTGCGACTCGGTTGGTCCGATGGTGGCTTCGACATATTCACTTCTCGAACAGGAGATACGGATGCAGTATGGGCTCTCACCACTCCGAACGAGATACATGACACAGGTGTCAGTAAGGCAACTCGGTTAATCGCCACCTCACCAACCATGTTGTTGGTGGTAGTGGTTGGCTGAAGCACTGCAACATCATGTGGAATGGCCAGTTGTTGAGACATGTGAGCTGTTGAGAATGCGTTGAGGATTTTGGGACCAGTTGTGTTTGGGGGATTCGGTTGCACGTGGTTTGTAGGAGGACTGAGTGATGGTGTGGCAAGTTTGGAGGTGATGCTTACCACTGGTGACGGGGTCAGTGTAGGCAAGTTGGGTCGATGCACACTCGACTGGTTCTCGGTCACCGAACCAATGTGTCCGTTCACGTGTGCATTTGCATTGGAACTGGAGAGTGGAGTGTGGTTCGAGGGATTTTCAATGGAATTGGGAT]

[+] EMBL CD096400             [CTCCGACGTTTCACCCAAATCATTCACATGATTCGTGTTCGCCTGATCTCTCGTTCCACTCAACTCTAGACAGCTCTCCTCGTCCTCACTCGACACTGATAAATCAATTGTTGCAGTCACAGGATTGCGACTCGGTTGGTCCGATGGTGGCTTCGACATATTCACTTCTCGAACAGGAGATACGGATGCAGTATGGGCTCTCACCACTCCGAACGAGATACATGACACAGGTGTCAGTAAGGCAACTCGGTTAATCGCCACCTCACCAACCATGTTGTTGGTGGTAGTGGTTGGCTGAAGCACTGCAACATCATGTGGAATGGCCAGTTGTTGAGACATGTGAGCTGTTGAGAATGCGTTGAGGATTTTGGGACCAGTTGTGTTTGGGGGATTCGGTTGCACGTGGTTTGTAGGAGGACTGAGTGATGGTGTGGCAAGTTTGGAGGTGATGCTTACCACTGGTGACGGGGTCAGTGTAGGCAAGTTGGGTCGATGCACACTCGACTGGTTCTCGGTCACCGAACCAATGTGTCCGTTCACGTGTGCATTTGCATTGGAACTGGAGAGTGGAGTGTGGTTCGAGGGATTNTCAATGGAATTGGGA ]
[-] EMBL CD096329             [ tnCGACGTTTCACCNNAATCATTCACATGATTCGTGTTCGCCTGATCTCTCGTTCCACTCAACTCTAGACAGCTCTCCTCGTCCTCACTCGACACTGATAAATCAATTGTTGCAGTCACAGGATTGCGACTCGGTTGGTCCGATGGTGGCTTCGACATATTCACTTCTCGAACAGGAGATACGGATGCAGTATGGGCTTTCACCACTCCGAACGAGATACATGACACAGGTGTCAGTAAGGCAACTCGGTTAATCGCCACCTCACCAACCATGTTGTTGGTGGTAGTGGTTGGCTGAAGCACTGCAACATCATGTGGAATGGCCAGTTGTTGAGACATGTGAGCTGTTGAGAATGCGTTGAGGATTTTGGGACCAGTTGTGTTTGGGGGATTCGGTTGCACGTGGTTTGTAGGAGGACTGAGTGATGGTGTGGCAAGTTTGGAGGTGATGCTTACCACTGGTGACGGGGTCAGTGTAGGCAAGTTGGGTCGATGCACACTCGACTGGTTCTCGGTCACCGAACCAATGTGTCCGTTCACGTGTGCATTTGCATTGGAACTGGAGAGTGGAGTGTGGTTCGAGGGATTTTCAATGGAATTGGGAT]
[+] EMBL CD096456             [                                                                                                                                                                                                                                                                                                                                                                                                                      TTTGTAGGAGGACTGAGTGATGGTGTGGCAAGTTTGGAGGTGATGCTTACCACTGGTGACGGGGTCAGTGTAGGCAAGTTGGGTCGATGCACACTCGACTGGTTCTCGGTCACCGAACCAATGTGTCCGTTCACGTGTGCATTTGCATTGGAACTGGAGAGTGGAGTGTGGTTCGAGGGATTTTCAATGGAATTGGGA ]




>consensus_8938#1
CTCCGACGTTTCACCCAAATCATTCACATGATTCGTGTTCGCCTGATCTCTCGTTCCACT
CAACTCTAGACAGCTCTCCTCGTCCTCACTCGACACTGATAAATCAATTGTTGCAGTCAC
AGGATTGCGACTCGGTTGGTCCGATGGTGGCTTCGACATATTCACTTCTCGAACAGGAGA
TACGGATGCAGTATGGGCTCTCACCACTCCGAACGAGATACATGACACAGGTGTCAGTAA
GGCAACTCGGTTAATCGCCACCTCACCAACCATGTTGTTGGTGGTAGTGGTTGGCTGAAG
CACTGCAACATCATGTGGAATGGCCAGTTGTTGAGACATGTGAGCTGTTGAGAATGCGTT
GAGGATTTTGGGACCAGTTGTGTTTGGGGGATTCGGTTGCACGTGGTTTGTAGGAGGACT
GAGTGATGGTGTGGCAAGTTTGGAGGTGATGCTTACCACTGGTGACGGGGTCAGTGTAGG
CAAGTTGGGTCGATGCACACTCGACTGGTTCTCGGTCACCGAACCAATGTGTCCGTTCAC
GTGTGCATTTGCATTGGAACTGGAGAGTGGAGTGTGGTTCGAGGGATTTTCAATGGAATT
GGGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8938#0      TTTCAATCTTCAGATCTAGGCATTTTATTCGCTTGTGAATCAACGTCTCTGACAATGGGG 60
consensus_8938#1      ------------------------------------------------------------
                                                                                  

consensus_8938#0      TTCCCTCACATTCCGATGTGATACTATCCTCCGACGTTTCACCGACACCATTCACGTGAT 120
consensus_8938#1      ----------------------------CTCCGACGTTTCACCCAAATCATTCACATGAT 32
                                                  *************** * * ******* ****

consensus_8938#0      TCGTGTTCGCCTGATCTCTCGTTCCACTCAACTCTAGACAGCTCTCCTCGTCCTCACTCG 180
consensus_8938#1      TCGTGTTCGCCTGATCTCTCGTTCCACTCAACTCTAGACAGCTCTCCTCGTCCTCACTCG 92
                      ************************************************************

consensus_8938#0      ACACTGATAAATCAATTGTTGCAGTCACAGGATTGCGACTCGGTTGGTCCGATGATGGCT 240
consensus_8938#1      ACACTGATAAATCAATTGTTGCAGTCACAGGATTGCGACTCGGTTGGTCCGATGGTGGCT 152
                      ****************************************************** *****

consensus_8938#0      TCGACATATTCACTTCTCGAACAGGAGATACGGATGCAGTATGGGCTCTCACCACTCCGA 300
consensus_8938#1      TCGACATATTCACTTCTCGAACAGGAGATACGGATGCAGTATGGGCTCTCACCACTCCGA 212
                      ************************************************************

consensus_8938#0      ACGAGATACATGACACAGGTGTCAGTAAGGCAACTCGGTTAATCGCCACCTCACCAACCA 360
consensus_8938#1      ACGAGATACATGACACAGGTGTCAGTAAGGCAACTCGGTTAATCGCCACCTCACCAACCA 272
                      ************************************************************

consensus_8938#0      TGTTGTTGGTGGTAGTGGTTGGCTGAAGCACTGCAACATCATGTGGAATGGCCAGTTGTT 420
consensus_8938#1      TGTTGTTGGTGGTAGTGGTTGGCTGAAGCACTGCAACATCATGTGGAATGGCCAGTTGTT 332
                      ************************************************************

consensus_8938#0      GAGACATGTGAGCTGTTGAGAATGCGTTGAGGATTTTGGGACCAGTTGTGTTTGGGGGAT 480
consensus_8938#1      GAGACATGTGAGCTGTTGAGAATGCGTTGAGGATTTTGGGACCAGTTGTGTTTGGGGGAT 392
                      ************************************************************

consensus_8938#0      TCGGTTGCACGTGGTTTGTAGGAGGACTGAGTGATGGTGTGGCAAGTTTGGAGGTGATGC 540
consensus_8938#1      TCGGTTGCACGTGGTTTGTAGGAGGACTGAGTGATGGTGTGGCAAGTTTGGAGGTGATGC 452
                      ************************************************************

consensus_8938#0      TTACCACTGGTGACGGGGTCAGTGTAGGCAAGTTGGGTCGATGCACACTCGACTGGTTCT 600
consensus_8938#1      TTACCACTGGTGACGGGGTCAGTGTAGGCAAGTTGGGTCGATGCACACTCGACTGGTTCT 512
                      ************************************************************

consensus_8938#0      CGGTCACCTGAATTCAATCGAAACAATTAGCACGTCATCGGGTAAGGCAAACCTACCGAA 660
consensus_8938#1      CGGTCACC-------------------------------------------------GAA 523
                      ********                                                 ***

consensus_8938#0      CCAATGTGTCCGTTCACGTGTGCATTTGCATTGGAACTGGAGAGTGGAGTGTGGTTCGAG 720
consensus_8938#1      CCAATGTGTCCGTTCACGTGTGCATTTGCATTGGAACTGGAGAGTGGAGTGTGGTTCGAG 583
                      ************************************************************

consensus_8938#0      GGATTT-CAATGGAATTGGGA- 740
consensus_8938#1      GGATTTTCAATGGAATTGGGAT 605
                      ****** **************