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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8939#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 945 fasta sequence
[TTTAGTCTTTTCAACTTTTCAACTACAGTGAATTGAATCGTTCGAATAACCCTCAGAATCAGTGCACCAAAGTGTGTAGTGGTTGATAAACCCTCCGTATCTGTCTCATCAATAAAGCTCGAACTGTTGGATATCCAACATTTATATATCAAGTCTACTCCTTACNAGCAGTCAACCTCTGAAGTTTGTTACCGGCTGAGTTCGTCCAAACAACTTCGCTGGAGTCCTTTGGGAGAAAACTTGACGTTTTTGAGGACTCGGCGATATTTCATTTTTTTGCCGTAATGCGTAGTCACTTCACTGAACAAGAAGCACTTCTGTAGTGACAAGCACAACGATTATTATTAATTATGGATGAAACCGAGTTAAAGCCAAACCTTGGTAGATTTGTGAACATAATCAGTAGGCCAGTATGTGAATCCGTAACGGTTGAGAAGGATTTGAAGCCTAATGGTGTTTATCAACCACCACACTTGACTCCAGTCTTCTTTGAGGAAGGCAAGAAAAAACCGTCAATAGAAAGGGCCAAGCTGAGAGCGGCTCGGTTTATTTTAGAAGATACTGATTTAAATGAATCAGAAGATTTGCCTAAAGAAGTTTATTTTGGATGTGGTTCCGAAGAAAGTTTTGCACGAAGAAAATGAAAGAAAAACAGAATTATGAGGAAGAAAACTTCACCCGTCTNGAAATACANNAACAGAGAAGCGAATTGAACGCTCTNTACTCCNACGTGGGTTATCCGATACTTNCTCANNNGACTGAACAATGCAANTACTNNTTACAAGNNTCGATGAAGAATTGGNAATATAACCNGCCNNCACAANNGNGANGNNTNGNNTGTATACTAATGGATGAATTTANAAAAAGAGAACAGCTGAAGCGTTAAGACGCAAAAAGGGCGTCAAAAGAACTANTNNGGNTTTGGGNTACAATGTTTCAATCCAG]
[+] EMBL AA559830 [TTTAGTCTTTTCAACTTTTCAACTACAGTGAATTGAATCGTTCGAATAACCCTCAGAATCAGTGCACCAAAGTGTGTAGTGGTTGATAAACCCTCCGTATCTGTCTCATCAATAAAGCTCGAACTGTTGGATATCCAACATTTATATATCAAGTCTACTCCTTACNAGCAGTCAACCTCTGAAGTTTGTTACCGGCTGAGTTCGTCCAAACAACTTCGCTGGAGTCCTTTGGGAGAAAACTTGACGTTTTTGAGGACTCGGCGATATTTCATTTTTTTGCCGTAATGCGTAGTCA ]
[+] EMBL CD080547 [ TGCACCAAAGTGTGTAGTGGTTGATAAACCCTCCGTATCTGTCTCATCAATAAAGCTCGAACTGTTGGATATCCAACATTTATATATCAAGTCTACTCCTTACGAGCAGTCAACCTCTGAAGTTTGTTACCGGCTGAGTTCGTCCAAACAACTTCGCTGGAGTCCTTTGGGAGAAAACTTGACGTTTTTGAGGACTCGGCGATATTTCATTTTTTTGCCGTAATGCGTAGTCACTTCACTGAACAAGAAGCACTTCTGTAGTGACAAGCACAACGATTATTATTAATTATGGATGAAACCGAGTTAAAGCCAAACCTTGGTAGATTTGTGAACATAATCAGTAGGCCAGTATGTGAATCCGTAACGGTTGAGAAGGATTTGAAGCCTAATGGTGTTTATCAACCACCACACTTGACTCCAGTCTTCTTTGAGGAAGGCAAGAAAAAACCGTCAATAGAAAGGGCCAAGCTGAGAGCGGCTCGGTTTATTTTAGAAGATACTGATTTAAATGAATCAGAAGATTTGCCTAAAGAAGTTTATTTTGGATGTGGTTCCGAAGAAAGTTTTGCACGAAGAAAATGAAAGAAAAACAGAATTATGAGGAAGAAAACTTCACCCGTCTNGAAATACANNAACAGAGAAGCGAATTGAACGCTCTNTACTCCNACGTGGGTTATCCGATACTTNCTCANNNGACTGAACAATGCAANTACTNNTTACAAGNNTCGATGAAGAATTGGNAATATAACCNGCCNNCACAANNGNGANGNNTNGNNTGTATACTAATGGATGAATTTANAAAAAGAGAACAGCTGAAGCGTTAAGACGCAAAAAGGGCGTCAAAAGAACTANTNNGGNTTTGGGNTACAATGTTTCAATCCAG]
consensusID : consensus_8939#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 748 fasta sequence
[TGTGGTGTAGTAGGTTTCTTCACGTTCGATAATAGAACGTCATGCGTTGTGATTGCGTTTATAGAACCATTATTAATATCTTCATACGTGAAACAGAAATATTTACCATTTGGCAAAATCATTTATATCACCAATCGGTCTGCTGAAAAGTTGAATATTAAGTTGTTTTCCCCCAAATTCCATTTAAAACCCCGGGTCTTAGGCTGTAGACTAAAATATCTTGTCTGATTTGTA-GCGCAAAGTACTTTACCATACTGTGCTCTTTTACGTTTTCCGAATGATCTGCTAATAATCTTTATAGTTTTTCAAATGGAAGTAGGATTACTTTTCCAGGCTACACAAGATTCTTTACGAAACAATAGGCATATCTACCCATGACAGTTACGAAATTAGCGGGGATTCTATTTTCCTTGACATTATGTGACAGACACCAAATCTCCCCGCAGTAACGCGTTGATAATAAACTTTCCAAGATTATTAAAATCTATGATTACGGTAGCGCCAGTTGGAGTTTTGAAATAATTATTCCTAATTCATAACTGTAGTTTACCTTTAGATTTTTCTGTCCTTCAGTTTTTGCCGTAATGCGTAGTCACTTCACTGAACAGAAGCACTTCTGTAGTGACAAGCACAACGATTATTATTAATTATGGATGAAACCGAGTTAAGCCAAACCTTGTAGATTTGTGTACGTTTTTCCAGTTGCCTTTCGTATTGTTAAATTAGACCATATCAGGAGGCCAGTATG]
[+] EMBL CD088966 [TGTGGTGTAGTAGGTTTCTTCACGTTCGATAATAGAACGTCATGCGTTGTGATTGCGTTTATAGAACCATTATTAATATCTTCATACGTGAAACAGAAATATTTACCATTTGGCAAAATCATTTATATCACCAATCGGTCTGCTGAAAAGTTGAATATTAAGTTGTTTTCCCCCAAATTCCATTTAAAACCCCGGGTCTTAGGCTGTAGACTAAAATATCTTGTCTGATTTGTA GCGCAAAGTACTTTACCATACTGTGCTCTTTTACGTTTTCCGAATGATCTGCTAATAATCTTTATAGTTTTTCAAATGGAAGTAGGATTACTTTTCCAGGCTACACAAGATTCTTTACGAAACAATAGGCATATCTACCCATGACAGTTACGAAATTAGCGGGGATTCTATTTTCCTTGACATTATGTGACAGACACCAAATCTCCCCGCAGTAACGCGTTGATAATAAACTTTCCAAGATTATTAAAATCTATGATTACGGTAGCGCCAGTTGGAGTTTTGAAATAATTATTCCTAATTCATAACTGTAGTTTACCTTTAGATTTTTCTGTCCTTCAGTTTTTGCCGTAATGCGTAGTCACTTCACTGAACAGAAGCACTTCTGTAGTGACAAGCACAACGATTATTATTAATTATGGATGAAACCGAGTTAAGCCAAACCTTGTAGATTTGTGTACGTTTTTCCAGTTGCCTTTCGTATTGTTAAATTAGACCATATCAGGAGGCCAGTATG]
[+] EMBL CD088896 [TGTGGTGTAGTAGGTTTCTTCACGTTCGATAATAGAACGTCATGCGTTGTGATTGCGTTTATAGAACCATTATTAATATCTTCATACGTGAAACAGAAATATTTACCATTTGGCAAAATCATTTATATCACCAATCGGTCTGCTGAAAAGTTGAATATTAAGTTGTTTTCCCCCAAATTCCATTTAAAACCCCGGGTCTTAGGCTGTAGACTAAAATATCTTGTCTGATTTGTA GCGCAAAGTACTTTACCATACTGTGCTCTTTTACGTTTTCCGAATGATCTGCTAATAATCTTTATAGTTTTTCAAATGGAAGTAGGATTACTTTTCCAGGCTACACAAGATTCTTTACGAAACAATAGGCATATCTACCCATGACAGTTACGAAATTAGCGGGGATTCTATTTTCCTTGACATTATGTGACAGACACCAAATCTCCCCGCAGTAACGCGTTGATAATAAACTTTCCAAGATTATTAAAATCTATGATTACGGTAGCGCCAGTTGGAGTTTTGAAATAATTATTCCTAATTCATAACTGTAGTTTACCTTTAGATTTTTCTGTCCTTCAGTTTTTGCCGTA ]
[+] EMBL CD088905 [TGTGGTGTAGTAGGTTTCTTCACGTTCGATAATAGAACGTCATGCGTTGTGATTGCGTTTATAGAACCATTATTAATATCTTCATACGTGAAACAGAAATATTTACCATTTGGCAAAATCATTTATATCACCAATCGGTCTGCTGAAAAGTTGAATATTAAGTTGTTTTCCCCCAAATTCCATTTAAAACCCCGGGTCTTAGACTGTAGACTAAAATATCTTGTCTGATTTGTA GCGCAAAGTACTTTACCATACTGTGCTCTTTTACGTTTTCCGAATGATCTGCTAATAATCTTTATAGTTTTTCAAATGGAAGTAGGATTACTTTTCCAGGCTACACAAGATTCTTTACGAAACAATAGGCATATCTACCCATGACAGTTACGAAATTAGCGGGGATTCTATTTTCCTTGACATTATGTGACAGACACCAAATCTCCCCGCAGTAACGCGTTGATAATAAACTTTCCAAGATTATTAAAATCTATGATTACGGTAGCGCCAGTTGGAGTTTTGAAATTATTATTCCTAATT ]
[+] EMBL CD088887 [ GCAAAATCATTTATATCACCAATCGGTCTGCTGAAAAGTTGAATATTAAGTTGTTTTCCCCCAAATTCCATTTAAAACCCCGGGTCTTAGGCTGTAGACTAAAATATCTTGTCTGATTTGTACCCGCAAAGTACTTTACCATACTGTGCTCTTTTACGTTTTCC ]
consensusID : consensus_8939#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 696 fasta sequence
[GTGACAGACACCAAATCTTCCCCGCAGTAACGCGTTGATAATAAACTTTCCAAGATTATTAAAATCTATGATTACGGTAGCGCCAGTTGGAGTTTTGAAATAATTATTCCTAATTCATAACTGTAGTTTACCTTTAGATTNTTCTGTCCTTCAGTTTTTGCCGTAATGCGTAGTCACTTCACTGAACAAGAAGCACTTCTGTAGTGACGAGCACAACGATTATTATTAATTATGGATGAAACCGAGTTAAAGCCAAACCTTGGTAGATTTGTGAACATAATCAGTAGGCCAGTATGTGAATCCGTAACGGTTGAGAAGGATTTGAAGCCTAATGGTGTTTATCAACCACCACACTTGACTCCAGTCTTCTTTGAGGAAGGCAAGAAAAAACCGTCAATGGAAAGGGCCAAGCTGAGAGCGGCTCGGTTTATTTTAGAAGATACTGATTTAAATGAATCAGAAGATTTGCCTAAAGAAGTTTATTTTGGATGTGGTTCCGAAGAAAGTTTTGCACGAAGAAAAATGAAAGAAAAACAGAATTATGAGGAAGAAAACTTCACCCGTCTGAAAATAACAAAACAAGAGAAGCGAATTGAACGCTCTTTACTCCCACGTGGTTTATCCGATACTTCCTCAAGACTGAAACAAATGCAAATACTTTTACAAAGTTCGGATGAAGAATTGGAATATAAACTG]
[-] EMBL CD149084 [GTGACAGACACCAAATCTTCCCCGCAGTAACGCGTTGATAATAAACTTTCCAAGATTATTAAAATCTATGATTACGGTAGCGCCAGTTGGAGTTTTGAAATAATTATTCCTAATTCATAACTGTAGTTTACCTTTAGATTNTTCTGTCCTTCAGTTTTTGCCGTAATGCGTAGTCACTTCACTGAACAAGAAGCACTTCTGTAGTGACGAGCACAACGATTATTATTAATTATGGATGAAACCGAGTTAAAGCCAAACCTTGGTAGATTTGTGAACATAATCAGTAGGCCAGTATGTGAATCCGTAACGGTTGAGAAGGATTTGAAGCCTAATGGTGTTTATCAACCACCACACTTGACTCCAGTCTTCTTTGAGGAAGGCAAGAAAAAACCGTCAATGGAAAGGGCCAAGCTGAGAGCGGCTCGGTTTATTTTAGAAGATACTGATTTAAATGAATCAGAAGATTTGCCTAAAGAAGTTTATTTTGGATGTGGTTCCGAAGAAAGTTTTGCACGAAGAAAAATGAAAGAAAAACAGAATTATGAGGAAGAAAACTTCACCCGTCTGAAAATAACA ]
[-] EMBL BG932603 [ AGGCAAGAAAAAACCGTCAATAGAAAGGGCCAAGCTGAGAGCGGCTCGGTTTATTTTAGAAGATACTGATTTAAATGAATCAGAAGATTTGCCTAAAGAAGTTTATTTTGGATGTGGTTCCGAAGAAAGTTTTGCACGAAGAAAAATGAAAGAAAAACAGAATTATGAGGAAGAAAACTTCACCCGTCTGAAAATAACAAAACAAGAGAAGCGAATTGAACGCTCTTTACTCCCACGTGGTTTATCCGATACTTCCTCAAGACTGAAACAAATGCAAATACTTTTACAAAGTTCGGATGAAGAATTGGAATATAAACTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8939#0 TTTAGTCTTTTCAACTTTTCAACTACAGTGAATTGAATCGTTCGAATAACCCTCAGAATC 60
consensus_8939#2 ------------------------------------------------------------
consensus_8939#1 -----------------------TGTGGTGTAGTAGGTTTCT----TCACGTTCGATAAT 33
consensus_8939#0 AGTGCACCAAAGTGTGTAGTGG--TTGATAAACCCTCCGTATCTGTCTCATCAATAAAGC 118
consensus_8939#2 ------------------------GTGACAGACA--CCAAATCT-TCCCCGCAGTAACGC 33
consensus_8939#1 AGAACGTCATGCGTTGTGATTGCGTTTATAGAACCATTATTAATATCTTCATACGTGAAA 93
* * * * * ** *
consensus_8939#0 TCGAACTGTTGGATATCCAACATTTATATATCAAGTCTACTCCTTACNAGCAGTCAACCT 178
consensus_8939#2 GTTGATAATAAACTTTCCAAGATTATTA----AAATCTA-TGATTACG-GTAG-CGCCAG 86
consensus_8939#1 CAGAAATATTTACCATTTGGCAAAATCAT-TTATATCACCAATCGGTCTGCTG--AAAAG 150
* * * * * * ** * *
consensus_8939#0 CTGAAGTTTGTTACCGGCTGAGTTCGTCCAAACAACTTCGCTGGAGTCCTTTGGGAGAAA 238
consensus_8939#2 TTGGAGTTT-----TGAAATAATTATTCCTAATT-CATAACTGTAGTTT----------A 130
consensus_8939#1 TTGAATATTA-----AGTTGTTTTCCCCCAAATTCCAT--TTAAAACCCC--------GG 195
** * ** ** ** ** * * * *
consensus_8939#0 ACTTGACGTTTTTGAGGACTCGGCGATATTTCATTTTTTTGCCGTAATGCGTAGTCACTT 298
consensus_8939#2 CCTTTAGATTNTT----------CTGTCCTTCAGTTTTT-GCCGTAATGCGTAGTCACTT 179
consensus_8939#1 GTCTTAGGCTGTAGA-----CTAAAATATCTTGTCTGAT--TTGTAGCGCAAAGT-ACTT 247
* * * * * * * * *** ** *** ****
consensus_8939#0 CACTGAACAAGAAGCACTTCTGTAGTGACAAGCA-CAACGATTATTATTAATTATGGATG 357
consensus_8939#2 CACTGAACAAGAAGCACTTCTGTAGTGACGAGCA-CAACGATTATTATTAATTATGGATG 238
consensus_8939#1 TACCATACTGTGCTCTTTTACGTTTTCCGAATGATCTGCTAATAATCTTTATAGTTTTTC 307
** ** * ** ** * * * * * * ** * ** ** * *
consensus_8939#0 AAACCGAGTTAAAGCCAAACCTTGGTAGATTTGTGAACATAATCAGTAGGCCAGTATGTG 417
consensus_8939#2 AAACCGAGTTAAAGCCAAACCTTGGTAGATTTGTGAACATAATCAGTAGGCCAGTATGTG 298
consensus_8939#1 AAATGGAAGTAGGATT--ACTTTTCCAGGCTACACAAGATTCTTTACGAAACAATAGGCA 365
*** ** ** ** ** ** * ** ** * ** ** *
consensus_8939#0 AATC----CGTAACGGTTGAGAAGG-ATTTGAAGCCTAATGGTGTTTATCAACCACCACA 472
consensus_8939#2 AATC----CGTAACGGTTGAGAAGG-ATTTGAAGCCTAATGGTGTTTATCAACCACCACA 353
consensus_8939#1 TATCTACCCATGACAGTTACGAAATTAGCGGGGATTCTATTTTCCTTGACA-TTATGTGA 424
*** * * ** *** *** * * ** * ** ** * *
consensus_8939#0 CTTGACTCCAGTCTTCTTTGAGGAAGGCA---AGAAAAAACCGTCAA----TAGAAAGGG 525
consensus_8939#2 CTTGACTCCAGTCTTCTTTGAGGAAGGCA---AGAAAAAACCGTCAA----TGGAAAGGG 406
consensus_8939#1 CAGACACCAAATCTCCCCGCAGTAACGCGTTGATAATAAACTTTCCAAGATTATTAAAAT 484
* * * *** * ** ** ** * ** **** ** * * **
consensus_8939#0 CCAAGCTGAGAGCGGCTCGGTTT--ATTTTAGAAGATACTGATTTAAATGAATCAGAAGA 583
consensus_8939#2 CCAAGCTGAGAGCGGCTCGGTTT--ATTTTAGAAGATACTGATTTAAATGAATCAGAAGA 464
consensus_8939#1 CTATGATTACGGTAGCGCCAGTTGGAGTTTTGAAATAATTATTCCTAATTCATAACTGTA 544
* * * * * * ** * ** * *** *** * * * *** ** * *
consensus_8939#0 -TTTGCCTAAAGAAGTTTATTTTGGATGTGGTTCCGAAGAAAGTTTTGCACGAAGAAAA- 641
consensus_8939#2 -TTTGCCTAAAGAAGTTTATTTTGGATGTGGTTCCGAAGAAAGTTTTGCACGAAGAAAAA 523
consensus_8939#1 GTTTACCTTTAGATTTTTCTGTCCT-TCAGTTTTTGCCGTAA--TGCGTAGTCACTTCAC 601
*** *** *** *** * * * * ** * * ** * * * * *
consensus_8939#0 TGAAAGAAAAACAGAATTATGAGGAAGAAAACTTCACCCGTCTNGAAATACANNAACA-G 700
consensus_8939#2 TGAAAGAAAAACAGAATTATGAGGAAGAAAACTTCACCCGTCTGAAAATAACAAAACAAG 583
consensus_8939#1 TGAAC-AGAAGCACTTCTGTAGTGACAAGCACAACGATTATTATTAATTATGGATGAAAC 660
**** * ** ** * * ** * ** * * ** ** *
consensus_8939#0 AGAAGCGAATTGAACGCTCTNTACTCCNACGTGGGTTATCCGATACTTNCTCANNNGACT 760
consensus_8939#2 AGAAGCGAATTGAACGCTCTTTACTCCCACGTGGTTTATCCGATACTTCCTCAAGACTGA 643
consensus_8939#1 CGAGTTAAGCCAAACCTTGTAGATTTGTGTACGTTTT-TCCAGTTGCCTTTCGTATTGTT 719
** * *** * * * * * ** *** * **
consensus_8939#0 GAACAATGCAANTACTNNTTACAAGNNTCGATGAAGAATTGGNAATATAACCNGCCNNCA 820
consensus_8939#2 AACAAATGCAAATACTTTTACAAAGTTCGGATGAAGAATTGGAA-TATAAACTG------ 696
consensus_8939#1 AAATTAGACCATATCAGGAGGCCAGTATG------------------------------- 748
* * * * * **
consensus_8939#0 CAANNGNGANGNNTNGNNTGTATACTAATGGATGAATTTANAAAAAGAGAACAGCTGAAG 880
consensus_8939#2 ------------------------------------------------------------
consensus_8939#1 ------------------------------------------------------------
consensus_8939#0 CGTTAAGACGCAAAAAGGGCGTCAAAAGAACTANTNNGGNTTTGGGNTACAATGTTTCAA 940
consensus_8939#2 ------------------------------------------------------------
consensus_8939#1 ------------------------------------------------------------
consensus_8939#0 TCCAG 945
consensus_8939#2 -----
consensus_8939#1 -----
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||