cluster # 8943

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 8943 cluster # 8943 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8943#0 length = 764 sequences # 7

consensus_8943#1 length = 439 sequences # 1

consensusID : consensus_8943#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 764
fasta sequence

                              [AGCCCTCATTTTTTCAATCTATAAAATTTTAACTTACAAATTAAAACATTCACTAAAAGAAGTATTGGAGAAAGAAACTTTTTAAGGAGCCATAGAGATAGTACCGTAAGGGAAAGATGAAAGACTTGTTAAAAGTAAATAAAAGCAAAGATTAAACCTTGTACCTTTTGCATAATGAACTAACTAGAAATCTTCTAACTAAGAGAACTTTAGCTAGAGACCCCGAAACCAAGCGAGCTACCCAAGAGCAACTTTAAGAGTTAACCCGTCTATGTAGCAAAATAGTGGGAAGACTTCTGGGTAGAGGTGAAAAGCCTAACGAGCCTGGTGATAGCTGGTTACCC-AATAAAGAATTTTAGTTCAACTTTAAGCCTACCATAAACTTTACTAACACAAATGTAAGCTTAAAATATAGCCTAAAGAGGGACAGCTCTTTAGGAACGGAAACAACCTCTAATAGTGAATAAGAC-AAT-CA-ATCAACTAACCATAGTTGGCTTAAGAGCAGCCATCAATAAAGAAAGCGTTCAAGCTCAACACTTAATAGTACATAATACCCTAAATAAAATCT-ATTTCCTATCTTCATAACTGGGTTAATCTATTAGCTAATAGAAGCAATACTGTTAGCATGAGTAACAAGAATATTATTCTCCACGCACAAGCCTATAACAACCCGGATAACCATTGTTAGTTAACAAATTATAAGTACATCACCCACTTATAAAAAGTACTTATTATCCAATGTTAGTCCAACACAGGTGTGCTAA]

[+] EMBL CD169093             [AGCCCTCATTTTTTCAATCTATAAAATTTTAACTTACAAATTAAAACATTCACTAAAAGAAGTATTGGAGAAAGAAACTTTTTAAGGAGCCATAGAGATAGTACCGTAAGGGAAAGATGAAAGACTTGTTAAAAGTAAATAAAAGCAAAGATTAAACCTTGTACCTTTTGCATAATGAACTAACTAGAAATCTTCTAACTAAGAGAACTTTAGCTAGAGACCCCGAAACCAAGCGAGCTACCCAAGAGCAACTTTAAGAGTTAACCCGTCTATGTAGCAAAATAGTGGGAAGACTTCTGGGTAGAGGTGAAAAGCCTAACGAGCCTGGTGATAGCTGGTTACCC AATAAAGAATTTTAGTTCAACTTTAAGCCTACCATAAACTTTACTAACACAAATGTAAGCTTAAAATATAGCCTAAAGAGGGACAGCTCTTTAGGAACGGAAACAACCTCTAATAGTGAATAAGAC AAT CA ATCAACTAACCATAGTTGG                                                                                                                                                                                                                                                                               ]
[+] EMBL CD169470             [AGCCCTCATTTTTTCAATCTATAAAATTTTAACTTACAAATTAAAACATTCACTAAAAGAAGTATTGGAGAAAGAAACTTTTTAAGGAGCCATAGAGATAGTACCGTAAGGGAAAGATGAAAGACTTGTTAAAAGTAAATAAAAGCAAAGATTAAACCTTGTACCTTTTGCATAATGAACTAACTAGAAATCTTCTAACTAAGAGAACTTTAGCTAGAGACCCCGAAACCAAGCGAGCTACCCAAGAGCAACTTTAAGAGTTAACCCGTCTATGTAGCAAAATAGTGGGAAGACTTCTGGGTAGAGGTGAAAAGCCTAACGAGCCTGGTGATAGCTGGTTACCC AATAAAGAATTTTAGTTCAACTTTAAGCCTACCATAAACTTTACTAACACAAATGTAAGCTTAAAATATAGCCTAAAGAGGGACAGCTCTTTAGGAACGGAAACAACCTCTAATAGTGAATAAGAC AAT CA ATC                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD168925             [AGCCCTCATTTTTTCAATCTATAAAATTTTAACTTACAAATTAAAACATTCACTAAAAGAAGTATTGGAGAAAGAAACTTTTTAAGGAGCCATAGAGATAGTACCGTAAGGGAAAGATGAAAGACTTGTTAAAAGTAAATAAAAGCAAAGATTAAACCTTGTACCTTTTGCATAATGAACTAACTAGAAATCTTCTAACTAAGAGAACTTTAGCTAGAGACCCCGAAACCAAGCGAGCTACCCAAGAGCAACTTTAAGAGTTAACCCGTCTATGTAGCAAAATAGTGGGAAGACTTCTGGGTAGAGGTGAAAAGCCTAACGAGCCTGGTGATAGCTGGTTACCC AATAAAGAATTTTAGTTCAACTTTAAGCCTACCATAAACTTTACTAACACAAATGTAAGCTTAAAATATAGCCTAAAGAGGGACAGCTCTTTAGGAACGGAAACAACCTCTAATAGTGAATAAGAC AAT CA ATCAACTAACCATAGTTGG                                                                                                                                                                                                                                                                               ]
[-] EMBL CD169126             [ GCCCTCATTTTTTCAATCTATAAAATTTTAACTTACAAATTAAAACATTCACTAAAAGAAGTATTGGAGAAAGAAACTTTTTAAGGAGCCATAGAGATAGTACCGTAAGGGAAAGATGAAAGACTTGTTAAAAGTAAATAAAAGCAAAGATTAAACCTTGTACCTTTTGCATAATGAACTAACTAGAAATCTTCTAACTAAGAGAACTTTAGCTAGAGACCCCGAAACCAAGCGAGCTACCCAAGAGCAACTTTAAGAGTTAACCCGTCTATGTAGCAAAATAGTGGGAAGACTTCTGGGTAGAGGTGAAAAGCCTAACGAGCCTGGTGATAGCTGGTTACCC AATAAAGAATTTTAGTTCAACTTTAAGCCTACCATAAACTTTACTAACACAAATGTAAGCTTAAAATATAGCCTAAAGAGGGACAGCTCTTTAGGAACGGAAACAACCTCTAATAGTGAATAAGAC AAT CA ATCAACTAACCATAGTTGGC                                                                                                                                                                                                                                                                              ]
[-] EMBL CD169079             [ GCCCTCATTTTTTCAATCTATAAAATTTTAACTTACAAATTAAAACATTCACTAAAAGAAGTATTGGAGAAAGAAACTTTTTAAGGAGCCATAGAGATAGTACCGTAAGGGAAAGATGAAAGACTTGTTAAAAGTAAATAAAAGCAAAGATTAAACCTTGTACCTTTTGCATAATGAACTAACTAGAAATCTTCTAACTAAGAGAACTTTAGCTAGAGACCCCGAAACCAAGCGAGCTACCCAAGAGCAACTTTAAGAGTTAACCCGTCTATGTAGCAAAATAGTGGGAAGACTTCTGGGTAGAGGTGAAAAGCCTAACGAGCCTGGTGATAGCTGGTTACCC AATAAAGAATTTTAGTTCAACTTTAAGCCTACCATAAACTTTACTAACACAAATGTAAGCTTAAAATATAGCCTAAAGAGGGACAGCTCTTTAGGAACGGAAACAACCTCTAATAGTGAATAAGAC AAT CA ATCAACTAACCATAGTTGGC                                                                                                                                                                                                                                                                              ]
[+] EMBL AI977013             [                      AAAATTTTAACTTACAAATTAAAACATTCACTAAAAGAAGTATTGGAGAAAGAAACTTTTTAAGGAGCCATAGAGATAGTACCGTAAGGGAAAGATGAAAGACTTGTTAAAAGTAAATAAAAGCAAAGATTAAACCTTGTACCTTTTGCATAATGAACTAACTAGAAATCTTCTAACTAAGAGAACTTTAGCTAGAGACCCCGAAACCAAGCGAGCTACCCAAGAGCAACTTTAAGAGTTAACCCGTCTATGTAGCAAAATAGTGGGAAGACTTCTGGGTAGAGGTGAAAAGCCTAACGAGCCTGGTGATAGCTGGTTACCC AATAAAGAATTTTAGTTCAACTTTAAGCCTACCATAAACTTTACTAACACAAATGTAAGCTTAAAATATAGCCTAAAGAGGGACAGCTCTTTAGGAACGGAAACAACCTCTAATAGTGAATAAGAC AAT CA ATCAACTAACCATAGTTGGCTTAAGAGCAGCCATCAATAAAGAAAGCGTTCAAGCTCAACACTTAATAGTACATAATACCCTAAATAAAATCT ATTTCCTATCTT                                                                                                                                                                                        ]
[-] EMBL AI740248             [                                                                                                                                                                                                                                                                                                                           CTAACGAGCCTGGTGATAGCTGGTTACCCAAATAAAGAATTTTAGTTCAACTTTAAGCGTACCATAAACTTTACTAACACAAATGTAAGCTTAAAATATAGCCTAAAGAGGGACAGCTCTTTAGGAACGGAAACAACCTCTAATAGTGAATAAGACAAATGCAGATCAACTAACCATAGTTGGCTTAAGAGCAGCCATCAATAAAGAAAGCGTTCAAGCTCAACACTTAATAGTACATAATACCCTAAATAAAATCTAAATACATATCTTCATAACTGGGTTAATCTATTAGCTAATAGAAGCAATACTGTTAGCATGAGTAACAAGAATATTATTCTCCACGCACAAGCCTATAACAACCCGGATAACCATTGTTAGTTAACAAATTATAAGTACATCACCCACTTATAAAAAGTACTTATTATCCAATGTTAGTCCAACACAGGTGTGCTAA]




>consensus_8943#0
AGCCCTCATTTTTTCAATCTATAAAATTTTAACTTACAAATTAAAACATTCACTAAAAGA
AGTATTGGAGAAAGAAACTTTTTAAGGAGCCATAGAGATAGTACCGTAAGGGAAAGATGA
AAGACTTGTTAAAAGTAAATAAAAGCAAAGATTAAACCTTGTACCTTTTGCATAATGAAC
TAACTAGAAATCTTCTAACTAAGAGAACTTTAGCTAGAGACCCCGAAACCAAGCGAGCTA
CCCAAGAGCAACTTTAAGAGTTAACCCGTCTATGTAGCAAAATAGTGGGAAGACTTCTGG
GTAGAGGTGAAAAGCCTAACGAGCCTGGTGATAGCTGGTTACCCAATAAAGAATTTTAGT
TCAACTTTAAGCCTACCATAAACTTTACTAACACAAATGTAAGCTTAAAATATAGCCTAA
AGAGGGACAGCTCTTTAGGAACGGAAACAACCTCTAATAGTGAATAAGACAATCAATCAA
CTAACCATAGTTGGCTTAAGAGCAGCCATCAATAAAGAAAGCGTTCAAGCTCAACACTTA
ATAGTACATAATACCCTAAATAAAATCTATTTCCTATCTTCATAACTGGGTTAATCTATT
AGCTAATAGAAGCAATACTGTTAGCATGAGTAACAAGAATATTATTCTCCACGCACAAGC
CTATAACAACCCGGATAACCATTGTTAGTTAACAAATTATAAGTACATCACCCACTTATA
AAAAGTACTTATTATCCAATGTTAGTCCAACACAGGTGTGCTAA

consensusID : consensus_8943#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 439
fasta sequence

                              [GGTACCCGGTGGTGAATAACGATGGCCAATCTATAAAATTTTAACTTACAAATTAAAACATTCACTAAAAGAAGTATTGGAGAAAGAAACTTTTTAAGGAGCCATAGAGATAGTACCGTAAGGGAAAGATGAAAGACTTGTTAAAAGTAAATAAAAGCAAAGATTAAATCTTGTACCTTTTGCATAATGAACTAACTAGAAATCTTCTAACTAAGAGAACTTTAGCTAGAGACCCCGAAACCAAGCGAGCTACCCAAGAGCAACTTTAAGAGTTAACCCGTCTATGTAGCAAAATAGTGGGAAGACTTCTGGGTAGAGGTGAAAAGCCTAACGAGCCTGGTGATAGCTGGTTACCCAATAAAGAATTTTAGTTCAACTTTAAGCCTACCATAAACTTTACTAACACAAATGTAAGCTTAAAATATAGCCTAAAGAGGGA]

[+] EMBL CD068725             [GGTACCCGGTGGTGAATAACGATGGCCAATCTATAAAATTTTAACTTACAAATTAAAACATTCACTAAAAGAAGTATTGGAGAAAGAAACTTTTTAAGGAGCCATAGAGATAGTACCGTAAGGGAAAGATGAAAGACTTGTTAAAAGTAAATAAAAGCAAAGATTAAATCTTGTACCTTTTGCATAATGAACTAACTAGAAATCTTCTAACTAAGAGAACTTTAGCTAGAGACCCCGAAACCAAGCGAGCTACCCAAGAGCAACTTTAAGAGTTAACCCGTCTATGTAGCAAAATAGTGGGAAGACTTCTGGGTAGAGGTGAAAAGCCTAACGAGCCTGGTGATAGCTGGTTACCCAATAAAGAATTTTAGTTCAACTTTAAGCCTACCATAAACTTTACTAACACAAATGTAAGCTTAAAATATAGCCTAAAGAGGGA]




>consensus_8943#1
GGTACCCGGTGGTGAATAACGATGGCCAATCTATAAAATTTTAACTTACAAATTAAAACA
TTCACTAAAAGAAGTATTGGAGAAAGAAACTTTTTAAGGAGCCATAGAGATAGTACCGTA
AGGGAAAGATGAAAGACTTGTTAAAAGTAAATAAAAGCAAAGATTAAATCTTGTACCTTT
TGCATAATGAACTAACTAGAAATCTTCTAACTAAGAGAACTTTAGCTAGAGACCCCGAAA
CCAAGCGAGCTACCCAAGAGCAACTTTAAGAGTTAACCCGTCTATGTAGCAAAATAGTGG
GAAGACTTCTGGGTAGAGGTGAAAAGCCTAACGAGCCTGGTGATAGCTGGTTACCCAATA
AAGAATTTTAGTTCAACTTTAAGCCTACCATAAACTTTACTAACACAAATGTAAGCTTAA
AATATAGCCTAAAGAGGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8943#0      ----------AGCCCTCATTTTT--TCAATCTATAAAATTTTAACTTACAAATTAAAACA 48
consensus_8943#1      GGTACCCGGTGGTGAATAACGATGGCCAATCTATAAAATTTTAACTTACAAATTAAAACA 60
                                 *     *    *   **********************************

consensus_8943#0      TTCACTAAAAGAAGTATTGGAGAAAGAAACTTTTTAAGGAGCCATAGAGATAGTACCGTA 108
consensus_8943#1      TTCACTAAAAGAAGTATTGGAGAAAGAAACTTTTTAAGGAGCCATAGAGATAGTACCGTA 120
                      ************************************************************

consensus_8943#0      AGGGAAAGATGAAAGACTTGTTAAAAGTAAATAAAAGCAAAGATTAAACCTTGTACCTTT 168
consensus_8943#1      AGGGAAAGATGAAAGACTTGTTAAAAGTAAATAAAAGCAAAGATTAAATCTTGTACCTTT 180
                      ************************************************ ***********

consensus_8943#0      TGCATAATGAACTAACTAGAAATCTTCTAACTAAGAGAACTTTAGCTAGAGACCCCGAAA 228
consensus_8943#1      TGCATAATGAACTAACTAGAAATCTTCTAACTAAGAGAACTTTAGCTAGAGACCCCGAAA 240
                      ************************************************************

consensus_8943#0      CCAAGCGAGCTACCCAAGAGCAACTTTAAGAGTTAACCCGTCTATGTAGCAAAATAGTGG 288
consensus_8943#1      CCAAGCGAGCTACCCAAGAGCAACTTTAAGAGTTAACCCGTCTATGTAGCAAAATAGTGG 300
                      ************************************************************

consensus_8943#0      GAAGACTTCTGGGTAGAGGTGAAAAGCCTAACGAGCCTGGTGATAGCTGGTTACCCAATA 348
consensus_8943#1      GAAGACTTCTGGGTAGAGGTGAAAAGCCTAACGAGCCTGGTGATAGCTGGTTACCCAATA 360
                      ************************************************************

consensus_8943#0      AAGAATTTTAGTTCAACTTTAAGCCTACCATAAACTTTACTAACACAAATGTAAGCTTAA 408
consensus_8943#1      AAGAATTTTAGTTCAACTTTAAGCCTACCATAAACTTTACTAACACAAATGTAAGCTTAA 420
                      ************************************************************

consensus_8943#0      AATATAGCCTAAAGAGGGACAGCTCTTTAGGAACGGAAACAACCTCTAATAGTGAATAAG 468
consensus_8943#1      AATATAGCCTAAAGAGGGA----------------------------------------- 439
                      *******************                                         

consensus_8943#0      ACAATCAATCAACTAACCATAGTTGGCTTAAGAGCAGCCATCAATAAAGAAAGCGTTCAA 528
consensus_8943#1      ------------------------------------------------------------
                                                                                  

consensus_8943#0      GCTCAACACTTAATAGTACATAATACCCTAAATAAAATCTATTTCCTATCTTCATAACTG 588
consensus_8943#1      ------------------------------------------------------------
                                                                                  

consensus_8943#0      GGTTAATCTATTAGCTAATAGAAGCAATACTGTTAGCATGAGTAACAAGAATATTATTCT 648
consensus_8943#1      ------------------------------------------------------------
                                                                                  

consensus_8943#0      CCACGCACAAGCCTATAACAACCCGGATAACCATTGTTAGTTAACAAATTATAAGTACAT 708
consensus_8943#1      ------------------------------------------------------------
                                                                                  

consensus_8943#0      CACCCACTTATAAAAAGTACTTATTATCCAATGTTAGTCCAACACAGGTGTGCTAA 764
consensus_8943#1      --------------------------------------------------------