These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8943#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 764 fasta sequence [AGCCCTCATTTTTTCAATCTATAAAATTTTAACTTACAAATTAAAACATTCACTAAAAGAAGTATTGGAGAAAGAAACTTTTTAAGGAGCCATAGAGATAGTACCGTAAGGGAAAGATGAAAGACTTGTTAAAAGTAAATAAAAGCAAAGATTAAACCTTGTACCTTTTGCATAATGAACTAACTAGAAATCTTCTAACTAAGAGAACTTTAGCTAGAGACCCCGAAACCAAGCGAGCTACCCAAGAGCAACTTTAAGAGTTAACCCGTCTATGTAGCAAAATAGTGGGAAGACTTCTGGGTAGAGGTGAAAAGCCTAACGAGCCTGGTGATAGCTGGTTACCC-AATAAAGAATTTTAGTTCAACTTTAAGCCTACCATAAACTTTACTAACACAAATGTAAGCTTAAAATATAGCCTAAAGAGGGACAGCTCTTTAGGAACGGAAACAACCTCTAATAGTGAATAAGAC-AAT-CA-ATCAACTAACCATAGTTGGCTTAAGAGCAGCCATCAATAAAGAAAGCGTTCAAGCTCAACACTTAATAGTACATAATACCCTAAATAAAATCT-ATTTCCTATCTTCATAACTGGGTTAATCTATTAGCTAATAGAAGCAATACTGTTAGCATGAGTAACAAGAATATTATTCTCCACGCACAAGCCTATAACAACCCGGATAACCATTGTTAGTTAACAAATTATAAGTACATCACCCACTTATAAAAAGTACTTATTATCCAATGTTAGTCCAACACAGGTGTGCTAA] [+] EMBL CD169093 [AGCCCTCATTTTTTCAATCTATAAAATTTTAACTTACAAATTAAAACATTCACTAAAAGAAGTATTGGAGAAAGAAACTTTTTAAGGAGCCATAGAGATAGTACCGTAAGGGAAAGATGAAAGACTTGTTAAAAGTAAATAAAAGCAAAGATTAAACCTTGTACCTTTTGCATAATGAACTAACTAGAAATCTTCTAACTAAGAGAACTTTAGCTAGAGACCCCGAAACCAAGCGAGCTACCCAAGAGCAACTTTAAGAGTTAACCCGTCTATGTAGCAAAATAGTGGGAAGACTTCTGGGTAGAGGTGAAAAGCCTAACGAGCCTGGTGATAGCTGGTTACCC AATAAAGAATTTTAGTTCAACTTTAAGCCTACCATAAACTTTACTAACACAAATGTAAGCTTAAAATATAGCCTAAAGAGGGACAGCTCTTTAGGAACGGAAACAACCTCTAATAGTGAATAAGAC AAT CA ATCAACTAACCATAGTTGG ] [+] EMBL CD169470 [AGCCCTCATTTTTTCAATCTATAAAATTTTAACTTACAAATTAAAACATTCACTAAAAGAAGTATTGGAGAAAGAAACTTTTTAAGGAGCCATAGAGATAGTACCGTAAGGGAAAGATGAAAGACTTGTTAAAAGTAAATAAAAGCAAAGATTAAACCTTGTACCTTTTGCATAATGAACTAACTAGAAATCTTCTAACTAAGAGAACTTTAGCTAGAGACCCCGAAACCAAGCGAGCTACCCAAGAGCAACTTTAAGAGTTAACCCGTCTATGTAGCAAAATAGTGGGAAGACTTCTGGGTAGAGGTGAAAAGCCTAACGAGCCTGGTGATAGCTGGTTACCC AATAAAGAATTTTAGTTCAACTTTAAGCCTACCATAAACTTTACTAACACAAATGTAAGCTTAAAATATAGCCTAAAGAGGGACAGCTCTTTAGGAACGGAAACAACCTCTAATAGTGAATAAGAC AAT CA ATC ] [+] EMBL CD168925 [AGCCCTCATTTTTTCAATCTATAAAATTTTAACTTACAAATTAAAACATTCACTAAAAGAAGTATTGGAGAAAGAAACTTTTTAAGGAGCCATAGAGATAGTACCGTAAGGGAAAGATGAAAGACTTGTTAAAAGTAAATAAAAGCAAAGATTAAACCTTGTACCTTTTGCATAATGAACTAACTAGAAATCTTCTAACTAAGAGAACTTTAGCTAGAGACCCCGAAACCAAGCGAGCTACCCAAGAGCAACTTTAAGAGTTAACCCGTCTATGTAGCAAAATAGTGGGAAGACTTCTGGGTAGAGGTGAAAAGCCTAACGAGCCTGGTGATAGCTGGTTACCC AATAAAGAATTTTAGTTCAACTTTAAGCCTACCATAAACTTTACTAACACAAATGTAAGCTTAAAATATAGCCTAAAGAGGGACAGCTCTTTAGGAACGGAAACAACCTCTAATAGTGAATAAGAC AAT CA ATCAACTAACCATAGTTGG ] [-] EMBL CD169126 [ GCCCTCATTTTTTCAATCTATAAAATTTTAACTTACAAATTAAAACATTCACTAAAAGAAGTATTGGAGAAAGAAACTTTTTAAGGAGCCATAGAGATAGTACCGTAAGGGAAAGATGAAAGACTTGTTAAAAGTAAATAAAAGCAAAGATTAAACCTTGTACCTTTTGCATAATGAACTAACTAGAAATCTTCTAACTAAGAGAACTTTAGCTAGAGACCCCGAAACCAAGCGAGCTACCCAAGAGCAACTTTAAGAGTTAACCCGTCTATGTAGCAAAATAGTGGGAAGACTTCTGGGTAGAGGTGAAAAGCCTAACGAGCCTGGTGATAGCTGGTTACCC AATAAAGAATTTTAGTTCAACTTTAAGCCTACCATAAACTTTACTAACACAAATGTAAGCTTAAAATATAGCCTAAAGAGGGACAGCTCTTTAGGAACGGAAACAACCTCTAATAGTGAATAAGAC AAT CA ATCAACTAACCATAGTTGGC ] [-] EMBL CD169079 [ GCCCTCATTTTTTCAATCTATAAAATTTTAACTTACAAATTAAAACATTCACTAAAAGAAGTATTGGAGAAAGAAACTTTTTAAGGAGCCATAGAGATAGTACCGTAAGGGAAAGATGAAAGACTTGTTAAAAGTAAATAAAAGCAAAGATTAAACCTTGTACCTTTTGCATAATGAACTAACTAGAAATCTTCTAACTAAGAGAACTTTAGCTAGAGACCCCGAAACCAAGCGAGCTACCCAAGAGCAACTTTAAGAGTTAACCCGTCTATGTAGCAAAATAGTGGGAAGACTTCTGGGTAGAGGTGAAAAGCCTAACGAGCCTGGTGATAGCTGGTTACCC AATAAAGAATTTTAGTTCAACTTTAAGCCTACCATAAACTTTACTAACACAAATGTAAGCTTAAAATATAGCCTAAAGAGGGACAGCTCTTTAGGAACGGAAACAACCTCTAATAGTGAATAAGAC AAT CA ATCAACTAACCATAGTTGGC ] [+] EMBL AI977013 [ AAAATTTTAACTTACAAATTAAAACATTCACTAAAAGAAGTATTGGAGAAAGAAACTTTTTAAGGAGCCATAGAGATAGTACCGTAAGGGAAAGATGAAAGACTTGTTAAAAGTAAATAAAAGCAAAGATTAAACCTTGTACCTTTTGCATAATGAACTAACTAGAAATCTTCTAACTAAGAGAACTTTAGCTAGAGACCCCGAAACCAAGCGAGCTACCCAAGAGCAACTTTAAGAGTTAACCCGTCTATGTAGCAAAATAGTGGGAAGACTTCTGGGTAGAGGTGAAAAGCCTAACGAGCCTGGTGATAGCTGGTTACCC AATAAAGAATTTTAGTTCAACTTTAAGCCTACCATAAACTTTACTAACACAAATGTAAGCTTAAAATATAGCCTAAAGAGGGACAGCTCTTTAGGAACGGAAACAACCTCTAATAGTGAATAAGAC AAT CA ATCAACTAACCATAGTTGGCTTAAGAGCAGCCATCAATAAAGAAAGCGTTCAAGCTCAACACTTAATAGTACATAATACCCTAAATAAAATCT ATTTCCTATCTT ] [-] EMBL AI740248 [ CTAACGAGCCTGGTGATAGCTGGTTACCCAAATAAAGAATTTTAGTTCAACTTTAAGCGTACCATAAACTTTACTAACACAAATGTAAGCTTAAAATATAGCCTAAAGAGGGACAGCTCTTTAGGAACGGAAACAACCTCTAATAGTGAATAAGACAAATGCAGATCAACTAACCATAGTTGGCTTAAGAGCAGCCATCAATAAAGAAAGCGTTCAAGCTCAACACTTAATAGTACATAATACCCTAAATAAAATCTAAATACATATCTTCATAACTGGGTTAATCTATTAGCTAATAGAAGCAATACTGTTAGCATGAGTAACAAGAATATTATTCTCCACGCACAAGCCTATAACAACCCGGATAACCATTGTTAGTTAACAAATTATAAGTACATCACCCACTTATAAAAAGTACTTATTATCCAATGTTAGTCCAACACAGGTGTGCTAA] consensusID : consensus_8943#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 439 fasta sequence [GGTACCCGGTGGTGAATAACGATGGCCAATCTATAAAATTTTAACTTACAAATTAAAACATTCACTAAAAGAAGTATTGGAGAAAGAAACTTTTTAAGGAGCCATAGAGATAGTACCGTAAGGGAAAGATGAAAGACTTGTTAAAAGTAAATAAAAGCAAAGATTAAATCTTGTACCTTTTGCATAATGAACTAACTAGAAATCTTCTAACTAAGAGAACTTTAGCTAGAGACCCCGAAACCAAGCGAGCTACCCAAGAGCAACTTTAAGAGTTAACCCGTCTATGTAGCAAAATAGTGGGAAGACTTCTGGGTAGAGGTGAAAAGCCTAACGAGCCTGGTGATAGCTGGTTACCCAATAAAGAATTTTAGTTCAACTTTAAGCCTACCATAAACTTTACTAACACAAATGTAAGCTTAAAATATAGCCTAAAGAGGGA] [+] EMBL CD068725 [GGTACCCGGTGGTGAATAACGATGGCCAATCTATAAAATTTTAACTTACAAATTAAAACATTCACTAAAAGAAGTATTGGAGAAAGAAACTTTTTAAGGAGCCATAGAGATAGTACCGTAAGGGAAAGATGAAAGACTTGTTAAAAGTAAATAAAAGCAAAGATTAAATCTTGTACCTTTTGCATAATGAACTAACTAGAAATCTTCTAACTAAGAGAACTTTAGCTAGAGACCCCGAAACCAAGCGAGCTACCCAAGAGCAACTTTAAGAGTTAACCCGTCTATGTAGCAAAATAGTGGGAAGACTTCTGGGTAGAGGTGAAAAGCCTAACGAGCCTGGTGATAGCTGGTTACCCAATAAAGAATTTTAGTTCAACTTTAAGCCTACCATAAACTTTACTAACACAAATGTAAGCTTAAAATATAGCCTAAAGAGGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8943#0 ----------AGCCCTCATTTTT--TCAATCTATAAAATTTTAACTTACAAATTAAAACA 48 consensus_8943#1 GGTACCCGGTGGTGAATAACGATGGCCAATCTATAAAATTTTAACTTACAAATTAAAACA 60 * * * ********************************** consensus_8943#0 TTCACTAAAAGAAGTATTGGAGAAAGAAACTTTTTAAGGAGCCATAGAGATAGTACCGTA 108 consensus_8943#1 TTCACTAAAAGAAGTATTGGAGAAAGAAACTTTTTAAGGAGCCATAGAGATAGTACCGTA 120 ************************************************************ consensus_8943#0 AGGGAAAGATGAAAGACTTGTTAAAAGTAAATAAAAGCAAAGATTAAACCTTGTACCTTT 168 consensus_8943#1 AGGGAAAGATGAAAGACTTGTTAAAAGTAAATAAAAGCAAAGATTAAATCTTGTACCTTT 180 ************************************************ *********** consensus_8943#0 TGCATAATGAACTAACTAGAAATCTTCTAACTAAGAGAACTTTAGCTAGAGACCCCGAAA 228 consensus_8943#1 TGCATAATGAACTAACTAGAAATCTTCTAACTAAGAGAACTTTAGCTAGAGACCCCGAAA 240 ************************************************************ consensus_8943#0 CCAAGCGAGCTACCCAAGAGCAACTTTAAGAGTTAACCCGTCTATGTAGCAAAATAGTGG 288 consensus_8943#1 CCAAGCGAGCTACCCAAGAGCAACTTTAAGAGTTAACCCGTCTATGTAGCAAAATAGTGG 300 ************************************************************ consensus_8943#0 GAAGACTTCTGGGTAGAGGTGAAAAGCCTAACGAGCCTGGTGATAGCTGGTTACCCAATA 348 consensus_8943#1 GAAGACTTCTGGGTAGAGGTGAAAAGCCTAACGAGCCTGGTGATAGCTGGTTACCCAATA 360 ************************************************************ consensus_8943#0 AAGAATTTTAGTTCAACTTTAAGCCTACCATAAACTTTACTAACACAAATGTAAGCTTAA 408 consensus_8943#1 AAGAATTTTAGTTCAACTTTAAGCCTACCATAAACTTTACTAACACAAATGTAAGCTTAA 420 ************************************************************ consensus_8943#0 AATATAGCCTAAAGAGGGACAGCTCTTTAGGAACGGAAACAACCTCTAATAGTGAATAAG 468 consensus_8943#1 AATATAGCCTAAAGAGGGA----------------------------------------- 439 ******************* consensus_8943#0 ACAATCAATCAACTAACCATAGTTGGCTTAAGAGCAGCCATCAATAAAGAAAGCGTTCAA 528 consensus_8943#1 ------------------------------------------------------------ consensus_8943#0 GCTCAACACTTAATAGTACATAATACCCTAAATAAAATCTATTTCCTATCTTCATAACTG 588 consensus_8943#1 ------------------------------------------------------------ consensus_8943#0 GGTTAATCTATTAGCTAATAGAAGCAATACTGTTAGCATGAGTAACAAGAATATTATTCT 648 consensus_8943#1 ------------------------------------------------------------ consensus_8943#0 CCACGCACAAGCCTATAACAACCCGGATAACCATTGTTAGTTAACAAATTATAAGTACAT 708 consensus_8943#1 ------------------------------------------------------------ consensus_8943#0 CACCCACTTATAAAAAGTACTTATTATCCAATGTTAGTCCAACACAGGTGTGCTAA 764 consensus_8943#1 -------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||