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Schistosoma mansoni
cluster # 8946 cluster # 8946       Sequences # 8       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8946#0 length = 797 sequences # 5  
consensus_8946#1 length = 673 sequences # 3  

consensusID : consensus_8946#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 797
fasta sequence
                              [ATAAACTTGGAATAAGAGAACGCCAATCTAACAATGATCGATTCATATTGATACGATTGATAAAATCCGATGTAGATCTATTTCATGATAAAATGGTACAATTTGGTTTCAAGATTATTATTGAACTAATAACACTTATAAAAACAAGCTACGGTGATCAGTAGGCTGCCCTGTCCTAGGAGGAACGGTTTTCCGAACTCCTAAAATATCGATGGATAACTATTATGTAACCATTGATCATGTGAAAGTACTACTTGAATTCAAACTACCAAGAAGAAGAAAATCAGCTCATGGGATTGAGAATAACTAGCTAGGGTTAAATTTTTTTTGCAGCTACTGACCTTTTCAATTATCCAATCAATCATTTCAATTGTACCTAGTGAGTGAATAATCAAATGACGCAGTACAGATTTGTGTATAAAGTTCTAAGATCTGTTAAGAATAGAAATGCATTGGTCAGATGCATCGATCAGAGGACAGCATATTGACGCG-GCTATTATTATCGTGTTTGCGTAAATCTAGTGCAATAGTAAATTAAACGAAATGCAAGGGTAAGCGAAGTGTAATTG-ATGAAAACGAAGTGAAAAGTATGTGCTCTATTGGTGA-CTTCATAGAGAACCAAGTATTAAACTATAAATCATGGATTGTTACGAAGCTAACAATACTACCAATTTTCTAGCGAGAAGCTGTGATCAGTGAGGATAATCCTTATAGGATGTGACTCAGTTACCCACCATAGACAATTGAAGATGATCGAGCAGTGTATCGTGGCTTGATTAACGTTGGACATCAACACT]

[+] EMBL CD092226             [ATAAACTTGGAATAAGAGAACGCCAATCTAACAATGATCGATTCATATTGATACGATTGATAAAATCCGATGTAGATCTATTTCATGATAAAATGGTACAATTTGGTTTCAAGATTATTATTGAACTAACAACATTTATAAAAACAAGCTACGGTGATCAGTAGGCTGCCCTGTCCTAGGAGGAACGGTTTTCCGAACTCCTAAAATATCGATGGATAACTATTATGTAACCATTGATCATGTGAAAGTACTACTTGAATTCAAACTACCAAGAAGAAGAAAATCAGCTCATGGGATTGAGAATAACTAGCTAGGGTTAAATTTTTTTTGCAGCTACTGACCTTTTCAATTATCCAATCAATCATTTCAATTGTACCTAGTGAGTGAATAATCAAATGACGCAGTACAGATTTGTGTATAAAGTTCTAAGATCTGTTAAGAATAGAAATGCATTGGTCAGATGCATCGATCAGAGGACAGCATATTGACGCG GCTATTATTATCGTGTTTGCGTAAATCTAGTGCAATAGTAAATTAAACGAAATGCAAGGGTAAGCGAAGTGTAATTG ATGAAAACGAAGTGAAAAGTATGTGCTCTATTGGTGA CTTCATAGAGAACC AGTATTAAACTATAAATCAT                                                                                                                                                            ]
[+] EMBL CD092187             [ATAAACTTGGAATAAGAGAACGCCAATCTAACAATGATCGATTCATATTGATACGATTGATAAAATCCGATGTAGATCTATTTCATGATAAAATGGTACAATTTGGTTTCAAGATTATTATTGAACTAATAACACTTATAAAAACAAGCTACGGTGATCAGTAGGCTGCCCTGTCCTAGGAGGAACGGTTTTCCGAACTCCTAAAATATCGATGGATAACTATTATGTAACCATTGATCATGTGAAAGTACTACTTGAATTCAAACTACCAAGAAGAAGAAAATCAGCTCATGGGATTGAGAATAACTAGCTAGGGTTAAATTTTTTTTGCAGCTACTGACCTTTTCAATTATCCAATCAATCATTTCAATTGTACCTAGTGAGTGAATAATCAAATGACGCAGTACAGATTTGTGTATAAAGTTCTAAGATCTGTTAAGAATAGAAATGCATTGGTCAGATGCATCGATCAGAGGACAGCATATTGACGCG GCTATTATTATCGTGTTTGCGTAAATCTAGTGCAATAGTAAATTAAACGAAATGCAAGGGTAAGCGAAGTGTAATTG ATGAAAACGAAGTGAAAAGTATGTGCTCTATTGGTGA CTTCATAGAGAACCAAGTATTAAACTATAAA                                                                                                                                                                ]
[+] EMBL CD092215             [ATAAACTTGGAATAAGAGAACGCCAATCTAACAATGATCGATTCATATTGATACGATTGATAAAATCCGATGTAGATCTATTTCATGATAAAATGGTACAATTTGGTTTCAAGATTATTATTGAACTAATAACACTTATAAAAACAAGCTACGGTGATCAGTAGGCTGCCCTGTCCTAGGAGGAACGGTTTTCCGAACTCCTAAAATATCGATGGATAACTATTATGTAACCATTGATCATGTGAAAGTACTACTTGAATTCAAACTACCAAGAAGAAGAAAATCAGCTCATGGGATTGAGAATAACTAGCTAGGGTTAAATTTTTTTTGCAGCTACTGACCTTTTCAATTATCCAATCAATCATTTCAATTGTACCTAGTGAGTGAATAATCAAATGACGCAGTACAGATTTGTGTATAAAGTTCTAAGATCTGTTAAGAATAGAAATGCATTGGTCAGATGCATCGATCAGAGGACAGCATATTGACGCG GCTATTATTATCGTGTTTGCGTAAATCTAGTGCAATAGTAAATTAAACGAAATGCAAGGGTAAGCGAAGTGTAATTG ATGAAAACGAAGTG AAAGTATGTGCTCTATTGGTGA CTTCATAGAGAACCAAGTATTAAACTATta                                                                                                                                                                 ]
[-] EMBL CD092166             [                                                                                                                                                                                                CCGAACTCCTANAATATCGATGGATAACTATTATGTAACCATTGATCATGTGAAAGTACTACTTGAATTCAAACTACCAAGAAGAAGAAAATCAGCTCATGGGATTGAGAATAACTAGCTAGGGTTAAATTTTTTTTGCAGCTACTGACCTTTTCAATTATCCAATCAATCATTTCAATTGTACCTAGTGAGTGAATAATCAAATGACGCAGTACAGATTTGTGTATAAAGTTCTAAGATCTGTTAAGAATAGAAATGCATTGGTCAGATGCATCGATCAGAGGACAGCATATTGACGCG GCTATTATTATCGTGTTTGCGTAAATCTAGTGCAATAGTAAATTAAACGAAATGCAAGGGTAAGCGAAGTGTAATTG ATGAAAACGAAGTGAAAAGTATGTGCTCTATTGGTGA CTTCATAGAGAACCAAGTATTAAACTATAAATCATGGATTGTTACGAAGCTAACAATACTACCAATTTTCTAGCGAGAAGCTGTGATCAGTGAGGATAATCCTTATAGGATGTGACTCAGTTACCCACCATAGACAATTGAAGATGATCGAGCAGTGTATCGTGGCTTGATTAACGTTGGACATCAACACT]
[-] EMBL CD092192             [                                                                                                                                                                                                                                      CCATTGATCATGTGAAAGTACTACTTGAATTCAAACTACCAAGAAGAAGAGAATCAGCTCATGGGATTGAGAATAACTAGCTAGGGTTAAA TTTTTTTGCAGCTACTGACCTTTTCAATTATCCAATCAATCATTTCAATTGTACTTAGTGAGTGAATAATCAAATGACGCAGTACAGATTTGTGTATAAAGTTCTAAGATCTGTTAAGAATAGAAATGCATTGGTCAGATGCATCGATCAGAGGACAGCATATTGACGCGCGCTATTATTATCGTGTTTGCGTAAATCTAGTGCAATAGTAAATTAAACGAAATGCAAGGGTAAGCGAAGTGTAATTGTATGAAAACGAAGTGAAAAGTATGTGCTCTATTGGTGATATTCATAGAGAGCCAAGTA TAAACTATGAATCATGGATTGTTGCGGAGCTAGCAATATTACCAATTTTATAGCAAGAAACTGTGATCAGTGAGGATAATCCTTATAGTATAAGATTCAGTTACCCACCATAGACAATTGAAGATGATCAAGCAGTGTATCGTGGCTTGATTAACGTTGGACATTAACAtt]


>consensus_8946#0 ATAAACTTGGAATAAGAGAACGCCAATCTAACAATGATCGATTCATATTGATACGATTGA TAAAATCCGATGTAGATCTATTTCATGATAAAATGGTACAATTTGGTTTCAAGATTATTA TTGAACTAATAACACTTATAAAAACAAGCTACGGTGATCAGTAGGCTGCCCTGTCCTAGG AGGAACGGTTTTCCGAACTCCTAAAATATCGATGGATAACTATTATGTAACCATTGATCA TGTGAAAGTACTACTTGAATTCAAACTACCAAGAAGAAGAAAATCAGCTCATGGGATTGA GAATAACTAGCTAGGGTTAAATTTTTTTTGCAGCTACTGACCTTTTCAATTATCCAATCA ATCATTTCAATTGTACCTAGTGAGTGAATAATCAAATGACGCAGTACAGATTTGTGTATA AAGTTCTAAGATCTGTTAAGAATAGAAATGCATTGGTCAGATGCATCGATCAGAGGACAG CATATTGACGCGGCTATTATTATCGTGTTTGCGTAAATCTAGTGCAATAGTAAATTAAAC GAAATGCAAGGGTAAGCGAAGTGTAATTGATGAAAACGAAGTGAAAAGTATGTGCTCTAT TGGTGACTTCATAGAGAACCAAGTATTAAACTATAAATCATGGATTGTTACGAAGCTAAC AATACTACCAATTTTCTAGCGAGAAGCTGTGATCAGTGAGGATAATCCTTATAGGATGTG ACTCAGTTACCCACCATAGACAATTGAAGATGATCGAGCAGTGTATCGTGGCTTGATTAA CGTTGGACATCAACACT



consensusID : consensus_8946#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 673
fasta sequence
                              [ATGGTAATTCAAATTTGACAGCTTCACTTGTAGATAATAATATTGATGGTGATGATGATGATGATGTTGAAGACAACGACGATGACAATGAAGATGCTAATGCACAGCCCAAAGTTTCAGTTGTTCATAATGCATTGAACTTTTTCAATAGATCTACATCGGATTTTATCAATCGTATCAATATGAATCGATCATTGTTAGATTGGCGTTCTCTTATTCCAAGTTTATCTACAAATCCAACTCCACAAACAGGAAGACGTGCAACTACTTCAAATTGTTTTACAAGTTCAAATTTAACTAATCAATATGGTGGATATCATGTTCAACAACAAAATTACTATTATCCTATTCCACCACCATATCAACCACAAAGTGAACGTATTTCACGTGTTTCATGGTCTAAATCATCATGTATAGGAATGAATAATAATACTGATTCAACATATAATCAATCTACTGATAATATCCCATTTACTAATACACATAAACTATCAGATTCTGTATATCTTACAAATCCAATANATGGTATATTGTTGAATATGAATTATCATTCTTTTTGACAATTATAATATGAATAGTAATGGTAATCATCAATTAATTAGACAATTTCCACAGGTCAATAATGCTTCAAATAGTGTCTTGTCAAATAATTATGACCGTGAATATCATTCTT]

[+] EMBL CD152966             [ATGGTAATTCAAATTTGACAGCTTCACTTGTAGATAATAATATTGATGGTGATGATGATGATGATGTTGAAGACAACGACGATGACAATGAAGATGCTAATGCACAGCCCAAAGTTTCAGTTGTTCATAATGCATTGAACTTTTTCAATAGATCTACATCGGATTTTATCAATCGTATCAATATGAATCGATCATTGTTAGATTGGCGTTCTCTTATTCCAAGTTTATCTACAAATCCAACTCCACAAACAGGAAGACGTGCAACTACTTCAAATTGTTTTACAAGTTCAAATTTAACTAATCAATATGGTGGATATCATGTTCAACAACAAAATTACTATTATCCTATTCCACCACCATATCAACCACAAAGTGAACGTATTTCACGTGTTTCATGGTCTAAATCATCATGTATAGGAATGAATAATAATACTGATTCAACATATAATCAATCTACTGATAATATCCCATTTACTAATACACATAAACTATCAGATTCTGTATATCTTACAAATCCAATANATGGTATATTGTTGAATATGAATTATCATTCTTTTTGACAATTATAATATGAATAGTAATGGTAATCATCAAT                                                                              ]
[+] EMBL CD153023             [ATGGTAATTCAAATTTGACAGCTTCACTTGTACATAATAATATTGATGGTGATGATGATGACGATGATGAACACAACGACGAACACAATGAAGATGCTAATGCACAGCCCAGAGTTGCAGTTGTTCATAATGCATTGAACTTTTTCAATAGATCTACATCGGATTTTATCACTCGTATCAATATGAATCGATCATTGCTAGATTGGCGCTCTCTTATTCCAAGTTTATCTACAAATCCAACTCCACACACAGGAAGACGTGCAACTACTTCAAATTGTTTTACAAGTTCAAATTTAACTAATCAATATGGAGGTTATCATGTTCAACATCAAAATTACTATTATCCTATTCCACCACCATATCAACCACAAAGTGAACGTATTTCACGTGTTTCATGGTCTAAATCATCATGTATAGGAATGAATAATAATACTGATTCAACATATAATCAATCTACTGATAATATCCCATTTACTAGTACACATAAACTATCAGATTCTGTATATC                                                                                                                                                                      ]
[+] EMBL CD117946             [                                                                                                                                                                                                                                                                                                                                    AACAACAAAATTACTATTATCCTATTCCACCACCATATCAACCACAAAGTGAACGTATTTCACGTGTTTCATGGTCTAAATCATCATGTATAGGAATGAATAATAATACTGATTCAACATATAATCAATCTACTGATAATATCCCATTTACTAATACACATAAACTATCAGATTCTGTATATCTTACAAATCCAATAAATGGTATATTGTTGAATATGAATTATCATTC TTTTGACAATTATAATATGAATAGTAATGGTAATCATCAATTAATTAGACAATTTCCACAGGTCAATAATGCTTCAAATAGTGTCTTGTCAAATAATTATGACCGTGAATATCATTCTT]


>consensus_8946#1 ATGGTAATTCAAATTTGACAGCTTCACTTGTAGATAATAATATTGATGGTGATGATGATG ATGATGTTGAAGACAACGACGATGACAATGAAGATGCTAATGCACAGCCCAAAGTTTCAG TTGTTCATAATGCATTGAACTTTTTCAATAGATCTACATCGGATTTTATCAATCGTATCA ATATGAATCGATCATTGTTAGATTGGCGTTCTCTTATTCCAAGTTTATCTACAAATCCAA CTCCACAAACAGGAAGACGTGCAACTACTTCAAATTGTTTTACAAGTTCAAATTTAACTA ATCAATATGGTGGATATCATGTTCAACAACAAAATTACTATTATCCTATTCCACCACCAT ATCAACCACAAAGTGAACGTATTTCACGTGTTTCATGGTCTAAATCATCATGTATAGGAA TGAATAATAATACTGATTCAACATATAATCAATCTACTGATAATATCCCATTTACTAATA CACATAAACTATCAGATTCTGTATATCTTACAAATCCAATANATGGTATATTGTTGAATA TGAATTATCATTCTTTTTGACAATTATAATATGAATAGTAATGGTAATCATCAATTAATT AGACAATTTCCACAGGTCAATAATGCTTCAAATAGTGTCTTGTCAAATAATTATGACCGT GAATATCATTCTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8946#0      ATAAACTTGGAATAAGAGAACGCCAATCTAACAATGATCGATTCATATTGATACGATTGA 60
consensus_8946#1      -------------ATGGTAATTCAAATTTGACAGCT-TCACTTGTAGATAATAATATTGA 46
                                   * *  **  * *** * ***    **  **     * ***  *****

consensus_8946#0      TAAAATCCGATGTAGATCTATTTCATGATAAAATGGTACAATTTGGTTTCAAGATTATTA 120
consensus_8946#1      TGGTGAT-GATGATGATGATGTTGAAGACAACG----ACGAT--GACAATGAAGATGCTA 99
                      *       ****  ***    ** * ** **      ** **  *      *   *  **

consensus_8946#0      TTGAACTAATAACACTTATAAAAACAAGCTACGGTGATCAGTAGGCTGCCCTGTCCTAGG 180
consensus_8946#1      ATGCACAGCCCAAAGTTTC---AGTTGTTCATAATG--CATTGAACTTTTTCAATAGATC 154
                       ** **     * * **     *       *   **  ** *   **          *  

consensus_8946#0      AGGAACGGTTTTCCGAACTCCTAA-AATATCGATGGATAACTATTATGTAACCATTGATC 239
consensus_8946#1      TACATCGGATTTTATCAATCGTATCAATATGAATCGATCATTGTTAGATTGGCGTTCTCT 214
                         * *** ***    * ** **  *****  ** *** * * ***  *   * **    

consensus_8946#0      ATGTGAAAGTACTACTTGAATTCAAACT--ACCAAGAAGAAGAAAATCAGCTCATGGGAT 297
consensus_8946#1      TATTCCAAGTTTATCTACAAATCCAACTCCACAAACAGGAAGACGTGCAACTACTTCAAA 274
                         *  ****    **  ** ** ****  ** ** * *****    ** **  *   * 

consensus_8946#0      TGAGAATAACTAGCTAGGGTTAAATTTTTTTTGCAGCTACTGACCTTTTCAATTATCCAA 357
consensus_8946#1      TTGTTTTACAAGTTCAAATTTAACTAATCAATATGGTGGATATCATGTTCAACAACAAAA 334
                      *     **       *   **** *  *   *   *    *  * * *****  *   **

consensus_8946#0      TCAATCAT-TTCAATTGTACCTAGTGAGTGAATAATCAAATGA-CGCAGTACAGATTTGT 415
consensus_8946#1      TTACTATTATCCTATTCCACC-ACCATATCAACCACAAAGTGAACGTATTTCA----CGT 389
                      * * *  * * * ***  *** *     * **  *  ** *** ** * * **     **

consensus_8946#0      GTATAAAGTTCTAAGATCTGTTAAGAATAGAAATGCATTGGTCAGATGCATCGATCAGAG 475
consensus_8946#1      GTTTCATGGTCTAAA--TCATCATGTATAGGAATGAAT-AATAATACTGATTCAACATAT 446
                      ** * * * *****      * * * **** **** **   * * *   **  * ** * 

consensus_8946#0      GA-CAGCATATTGACGCGGCTATTATTATCGTGTTTGCGTAAATCTAGTGCAATAGTAAA 534
consensus_8946#1      AATCAATCTACTGATAATATC-CCATTTACTAATACACATAAACTATCAGATTCTGTATA 505
                       * **   ** ***          ***  *   *   * ****      *     *** *

consensus_8946#0      TTAAACGAAATGCAAGGGTAAGCGAAGTGTAATTGATGAAAACGAAGTGAAAAGTATGTG 594
consensus_8946#1      TCTTAC-AAATCCAA---TANATGGTAT---ATTGTTGAATATGAATT----ATCATTCT 554
                      *   ** **** ***   **   *   *   **** **** * *** *    *  **   

consensus_8946#0      CTCTATTGGTGACTTCATAGAGAACCA-AGTATTAAACTATAAATCATGGATTGTTACGA 653
consensus_8946#1      TTTTGACAATTATAATATGAATAGTAATGGTAATCATCAATTAATTAGACAATTTCCACA 614
                       * *     * *    **  * *   *  *** * * * ** *** *   * * *    *

consensus_8946#0      AGCTAACAATACTACCAATT---TTCTAGCGAGAAGCTGTGATCAGTGAGGATAATCCTT 710
consensus_8946#1      GGTCAATAATGCTTCAAATAGTGTCTTGTCAAATAATTATGACC-GTGAATATCATTCTT 673
                       *  ** *** ** * ***    *  *  * *  *  * *** * ****  ** ** ***

consensus_8946#0      ATAGGATGTGACTCAGTTACCCACCATAGACAATTGAAGATGATCGAGCAGTGTATCGTG 770
consensus_8946#1      ------------------------------------------------------------
                                                                                  

consensus_8946#0      GCTTGATTAACGTTGGACATCAACACT 797
consensus_8946#1      ---------------------------
                                                 




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)