These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8946#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 797 fasta sequence [ATAAACTTGGAATAAGAGAACGCCAATCTAACAATGATCGATTCATATTGATACGATTGATAAAATCCGATGTAGATCTATTTCATGATAAAATGGTACAATTTGGTTTCAAGATTATTATTGAACTAATAACACTTATAAAAACAAGCTACGGTGATCAGTAGGCTGCCCTGTCCTAGGAGGAACGGTTTTCCGAACTCCTAAAATATCGATGGATAACTATTATGTAACCATTGATCATGTGAAAGTACTACTTGAATTCAAACTACCAAGAAGAAGAAAATCAGCTCATGGGATTGAGAATAACTAGCTAGGGTTAAATTTTTTTTGCAGCTACTGACCTTTTCAATTATCCAATCAATCATTTCAATTGTACCTAGTGAGTGAATAATCAAATGACGCAGTACAGATTTGTGTATAAAGTTCTAAGATCTGTTAAGAATAGAAATGCATTGGTCAGATGCATCGATCAGAGGACAGCATATTGACGCG-GCTATTATTATCGTGTTTGCGTAAATCTAGTGCAATAGTAAATTAAACGAAATGCAAGGGTAAGCGAAGTGTAATTG-ATGAAAACGAAGTGAAAAGTATGTGCTCTATTGGTGA-CTTCATAGAGAACCAAGTATTAAACTATAAATCATGGATTGTTACGAAGCTAACAATACTACCAATTTTCTAGCGAGAAGCTGTGATCAGTGAGGATAATCCTTATAGGATGTGACTCAGTTACCCACCATAGACAATTGAAGATGATCGAGCAGTGTATCGTGGCTTGATTAACGTTGGACATCAACACT] [+] EMBL CD092226 [ATAAACTTGGAATAAGAGAACGCCAATCTAACAATGATCGATTCATATTGATACGATTGATAAAATCCGATGTAGATCTATTTCATGATAAAATGGTACAATTTGGTTTCAAGATTATTATTGAACTAACAACATTTATAAAAACAAGCTACGGTGATCAGTAGGCTGCCCTGTCCTAGGAGGAACGGTTTTCCGAACTCCTAAAATATCGATGGATAACTATTATGTAACCATTGATCATGTGAAAGTACTACTTGAATTCAAACTACCAAGAAGAAGAAAATCAGCTCATGGGATTGAGAATAACTAGCTAGGGTTAAATTTTTTTTGCAGCTACTGACCTTTTCAATTATCCAATCAATCATTTCAATTGTACCTAGTGAGTGAATAATCAAATGACGCAGTACAGATTTGTGTATAAAGTTCTAAGATCTGTTAAGAATAGAAATGCATTGGTCAGATGCATCGATCAGAGGACAGCATATTGACGCG GCTATTATTATCGTGTTTGCGTAAATCTAGTGCAATAGTAAATTAAACGAAATGCAAGGGTAAGCGAAGTGTAATTG ATGAAAACGAAGTGAAAAGTATGTGCTCTATTGGTGA CTTCATAGAGAACC AGTATTAAACTATAAATCAT ] [+] EMBL CD092187 [ATAAACTTGGAATAAGAGAACGCCAATCTAACAATGATCGATTCATATTGATACGATTGATAAAATCCGATGTAGATCTATTTCATGATAAAATGGTACAATTTGGTTTCAAGATTATTATTGAACTAATAACACTTATAAAAACAAGCTACGGTGATCAGTAGGCTGCCCTGTCCTAGGAGGAACGGTTTTCCGAACTCCTAAAATATCGATGGATAACTATTATGTAACCATTGATCATGTGAAAGTACTACTTGAATTCAAACTACCAAGAAGAAGAAAATCAGCTCATGGGATTGAGAATAACTAGCTAGGGTTAAATTTTTTTTGCAGCTACTGACCTTTTCAATTATCCAATCAATCATTTCAATTGTACCTAGTGAGTGAATAATCAAATGACGCAGTACAGATTTGTGTATAAAGTTCTAAGATCTGTTAAGAATAGAAATGCATTGGTCAGATGCATCGATCAGAGGACAGCATATTGACGCG GCTATTATTATCGTGTTTGCGTAAATCTAGTGCAATAGTAAATTAAACGAAATGCAAGGGTAAGCGAAGTGTAATTG ATGAAAACGAAGTGAAAAGTATGTGCTCTATTGGTGA CTTCATAGAGAACCAAGTATTAAACTATAAA ] [+] EMBL CD092215 [ATAAACTTGGAATAAGAGAACGCCAATCTAACAATGATCGATTCATATTGATACGATTGATAAAATCCGATGTAGATCTATTTCATGATAAAATGGTACAATTTGGTTTCAAGATTATTATTGAACTAATAACACTTATAAAAACAAGCTACGGTGATCAGTAGGCTGCCCTGTCCTAGGAGGAACGGTTTTCCGAACTCCTAAAATATCGATGGATAACTATTATGTAACCATTGATCATGTGAAAGTACTACTTGAATTCAAACTACCAAGAAGAAGAAAATCAGCTCATGGGATTGAGAATAACTAGCTAGGGTTAAATTTTTTTTGCAGCTACTGACCTTTTCAATTATCCAATCAATCATTTCAATTGTACCTAGTGAGTGAATAATCAAATGACGCAGTACAGATTTGTGTATAAAGTTCTAAGATCTGTTAAGAATAGAAATGCATTGGTCAGATGCATCGATCAGAGGACAGCATATTGACGCG GCTATTATTATCGTGTTTGCGTAAATCTAGTGCAATAGTAAATTAAACGAAATGCAAGGGTAAGCGAAGTGTAATTG ATGAAAACGAAGTG AAAGTATGTGCTCTATTGGTGA CTTCATAGAGAACCAAGTATTAAACTATta ] [-] EMBL CD092166 [ CCGAACTCCTANAATATCGATGGATAACTATTATGTAACCATTGATCATGTGAAAGTACTACTTGAATTCAAACTACCAAGAAGAAGAAAATCAGCTCATGGGATTGAGAATAACTAGCTAGGGTTAAATTTTTTTTGCAGCTACTGACCTTTTCAATTATCCAATCAATCATTTCAATTGTACCTAGTGAGTGAATAATCAAATGACGCAGTACAGATTTGTGTATAAAGTTCTAAGATCTGTTAAGAATAGAAATGCATTGGTCAGATGCATCGATCAGAGGACAGCATATTGACGCG GCTATTATTATCGTGTTTGCGTAAATCTAGTGCAATAGTAAATTAAACGAAATGCAAGGGTAAGCGAAGTGTAATTG ATGAAAACGAAGTGAAAAGTATGTGCTCTATTGGTGA CTTCATAGAGAACCAAGTATTAAACTATAAATCATGGATTGTTACGAAGCTAACAATACTACCAATTTTCTAGCGAGAAGCTGTGATCAGTGAGGATAATCCTTATAGGATGTGACTCAGTTACCCACCATAGACAATTGAAGATGATCGAGCAGTGTATCGTGGCTTGATTAACGTTGGACATCAACACT] [-] EMBL CD092192 [ CCATTGATCATGTGAAAGTACTACTTGAATTCAAACTACCAAGAAGAAGAGAATCAGCTCATGGGATTGAGAATAACTAGCTAGGGTTAAA TTTTTTTGCAGCTACTGACCTTTTCAATTATCCAATCAATCATTTCAATTGTACTTAGTGAGTGAATAATCAAATGACGCAGTACAGATTTGTGTATAAAGTTCTAAGATCTGTTAAGAATAGAAATGCATTGGTCAGATGCATCGATCAGAGGACAGCATATTGACGCGCGCTATTATTATCGTGTTTGCGTAAATCTAGTGCAATAGTAAATTAAACGAAATGCAAGGGTAAGCGAAGTGTAATTGTATGAAAACGAAGTGAAAAGTATGTGCTCTATTGGTGATATTCATAGAGAGCCAAGTA TAAACTATGAATCATGGATTGTTGCGGAGCTAGCAATATTACCAATTTTATAGCAAGAAACTGTGATCAGTGAGGATAATCCTTATAGTATAAGATTCAGTTACCCACCATAGACAATTGAAGATGATCAAGCAGTGTATCGTGGCTTGATTAACGTTGGACATTAACAtt] consensusID : consensus_8946#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 673 fasta sequence [ATGGTAATTCAAATTTGACAGCTTCACTTGTAGATAATAATATTGATGGTGATGATGATGATGATGTTGAAGACAACGACGATGACAATGAAGATGCTAATGCACAGCCCAAAGTTTCAGTTGTTCATAATGCATTGAACTTTTTCAATAGATCTACATCGGATTTTATCAATCGTATCAATATGAATCGATCATTGTTAGATTGGCGTTCTCTTATTCCAAGTTTATCTACAAATCCAACTCCACAAACAGGAAGACGTGCAACTACTTCAAATTGTTTTACAAGTTCAAATTTAACTAATCAATATGGTGGATATCATGTTCAACAACAAAATTACTATTATCCTATTCCACCACCATATCAACCACAAAGTGAACGTATTTCACGTGTTTCATGGTCTAAATCATCATGTATAGGAATGAATAATAATACTGATTCAACATATAATCAATCTACTGATAATATCCCATTTACTAATACACATAAACTATCAGATTCTGTATATCTTACAAATCCAATANATGGTATATTGTTGAATATGAATTATCATTCTTTTTGACAATTATAATATGAATAGTAATGGTAATCATCAATTAATTAGACAATTTCCACAGGTCAATAATGCTTCAAATAGTGTCTTGTCAAATAATTATGACCGTGAATATCATTCTT] [+] EMBL CD152966 [ATGGTAATTCAAATTTGACAGCTTCACTTGTAGATAATAATATTGATGGTGATGATGATGATGATGTTGAAGACAACGACGATGACAATGAAGATGCTAATGCACAGCCCAAAGTTTCAGTTGTTCATAATGCATTGAACTTTTTCAATAGATCTACATCGGATTTTATCAATCGTATCAATATGAATCGATCATTGTTAGATTGGCGTTCTCTTATTCCAAGTTTATCTACAAATCCAACTCCACAAACAGGAAGACGTGCAACTACTTCAAATTGTTTTACAAGTTCAAATTTAACTAATCAATATGGTGGATATCATGTTCAACAACAAAATTACTATTATCCTATTCCACCACCATATCAACCACAAAGTGAACGTATTTCACGTGTTTCATGGTCTAAATCATCATGTATAGGAATGAATAATAATACTGATTCAACATATAATCAATCTACTGATAATATCCCATTTACTAATACACATAAACTATCAGATTCTGTATATCTTACAAATCCAATANATGGTATATTGTTGAATATGAATTATCATTCTTTTTGACAATTATAATATGAATAGTAATGGTAATCATCAAT ] [+] EMBL CD153023 [ATGGTAATTCAAATTTGACAGCTTCACTTGTACATAATAATATTGATGGTGATGATGATGACGATGATGAACACAACGACGAACACAATGAAGATGCTAATGCACAGCCCAGAGTTGCAGTTGTTCATAATGCATTGAACTTTTTCAATAGATCTACATCGGATTTTATCACTCGTATCAATATGAATCGATCATTGCTAGATTGGCGCTCTCTTATTCCAAGTTTATCTACAAATCCAACTCCACACACAGGAAGACGTGCAACTACTTCAAATTGTTTTACAAGTTCAAATTTAACTAATCAATATGGAGGTTATCATGTTCAACATCAAAATTACTATTATCCTATTCCACCACCATATCAACCACAAAGTGAACGTATTTCACGTGTTTCATGGTCTAAATCATCATGTATAGGAATGAATAATAATACTGATTCAACATATAATCAATCTACTGATAATATCCCATTTACTAGTACACATAAACTATCAGATTCTGTATATC ] [+] EMBL CD117946 [ AACAACAAAATTACTATTATCCTATTCCACCACCATATCAACCACAAAGTGAACGTATTTCACGTGTTTCATGGTCTAAATCATCATGTATAGGAATGAATAATAATACTGATTCAACATATAATCAATCTACTGATAATATCCCATTTACTAATACACATAAACTATCAGATTCTGTATATCTTACAAATCCAATAAATGGTATATTGTTGAATATGAATTATCATTC TTTTGACAATTATAATATGAATAGTAATGGTAATCATCAATTAATTAGACAATTTCCACAGGTCAATAATGCTTCAAATAGTGTCTTGTCAAATAATTATGACCGTGAATATCATTCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8946#0 ATAAACTTGGAATAAGAGAACGCCAATCTAACAATGATCGATTCATATTGATACGATTGA 60 consensus_8946#1 -------------ATGGTAATTCAAATTTGACAGCT-TCACTTGTAGATAATAATATTGA 46 * * ** * *** * *** ** ** * *** ***** consensus_8946#0 TAAAATCCGATGTAGATCTATTTCATGATAAAATGGTACAATTTGGTTTCAAGATTATTA 120 consensus_8946#1 TGGTGAT-GATGATGATGATGTTGAAGACAACG----ACGAT--GACAATGAAGATGCTA 99 * **** *** ** * ** ** ** ** * * * ** consensus_8946#0 TTGAACTAATAACACTTATAAAAACAAGCTACGGTGATCAGTAGGCTGCCCTGTCCTAGG 180 consensus_8946#1 ATGCACAGCCCAAAGTTTC---AGTTGTTCATAATG--CATTGAACTTTTTCAATAGATC 154 ** ** * * ** * * ** ** * ** * consensus_8946#0 AGGAACGGTTTTCCGAACTCCTAA-AATATCGATGGATAACTATTATGTAACCATTGATC 239 consensus_8946#1 TACATCGGATTTTATCAATCGTATCAATATGAATCGATCATTGTTAGATTGGCGTTCTCT 214 * *** *** * ** ** ***** ** *** * * *** * * ** consensus_8946#0 ATGTGAAAGTACTACTTGAATTCAAACT--ACCAAGAAGAAGAAAATCAGCTCATGGGAT 297 consensus_8946#1 TATTCCAAGTTTATCTACAAATCCAACTCCACAAACAGGAAGACGTGCAACTACTTCAAA 274 * **** ** ** ** **** ** ** * ***** ** ** * * consensus_8946#0 TGAGAATAACTAGCTAGGGTTAAATTTTTTTTGCAGCTACTGACCTTTTCAATTATCCAA 357 consensus_8946#1 TTGTTTTACAAGTTCAAATTTAACTAATCAATATGGTGGATATCATGTTCAACAACAAAA 334 * ** * **** * * * * * * * ***** * ** consensus_8946#0 TCAATCAT-TTCAATTGTACCTAGTGAGTGAATAATCAAATGA-CGCAGTACAGATTTGT 415 consensus_8946#1 TTACTATTATCCTATTCCACC-ACCATATCAACCACAAAGTGAACGTATTTCA----CGT 389 * * * * * * *** *** * * ** * ** *** ** * * ** ** consensus_8946#0 GTATAAAGTTCTAAGATCTGTTAAGAATAGAAATGCATTGGTCAGATGCATCGATCAGAG 475 consensus_8946#1 GTTTCATGGTCTAAA--TCATCATGTATAGGAATGAAT-AATAATACTGATTCAACATAT 446 ** * * * ***** * * * **** **** ** * * * ** * ** * consensus_8946#0 GA-CAGCATATTGACGCGGCTATTATTATCGTGTTTGCGTAAATCTAGTGCAATAGTAAA 534 consensus_8946#1 AATCAATCTACTGATAATATC-CCATTTACTAATACACATAAACTATCAGATTCTGTATA 505 * ** ** *** *** * * * **** * *** * consensus_8946#0 TTAAACGAAATGCAAGGGTAAGCGAAGTGTAATTGATGAAAACGAAGTGAAAAGTATGTG 594 consensus_8946#1 TCTTAC-AAATCCAA---TANATGGTAT---ATTGTTGAATATGAATT----ATCATTCT 554 * ** **** *** ** * * **** **** * *** * * ** consensus_8946#0 CTCTATTGGTGACTTCATAGAGAACCA-AGTATTAAACTATAAATCATGGATTGTTACGA 653 consensus_8946#1 TTTTGACAATTATAATATGAATAGTAATGGTAATCATCAATTAATTAGACAATTTCCACA 614 * * * * ** * * * *** * * * ** *** * * * * * consensus_8946#0 AGCTAACAATACTACCAATT---TTCTAGCGAGAAGCTGTGATCAGTGAGGATAATCCTT 710 consensus_8946#1 GGTCAATAATGCTTCAAATAGTGTCTTGTCAAATAATTATGACC-GTGAATATCATTCTT 673 * ** *** ** * *** * * * * * * *** * **** ** ** *** consensus_8946#0 ATAGGATGTGACTCAGTTACCCACCATAGACAATTGAAGATGATCGAGCAGTGTATCGTG 770 consensus_8946#1 ------------------------------------------------------------ consensus_8946#0 GCTTGATTAACGTTGGACATCAACACT 797 consensus_8946#1 --------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||