cluster # 8947

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Schistosoma mansoni
cluster # 8947 cluster # 8947 Sequences # 8 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8947#0 length = 711 sequences # 1
consensus_8947#1 length = 516 sequences # 2

consensus_8947#2 length = 317 sequences # 4
consensus_8947#3 length = 168 sequences # 1

consensusID : consensus_8947#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 711
fasta sequence

                              [GGCCANAATTTGGCACGAGGTATCGTTCGGTGATCATCCTGTACCATCGGAACGTACACTCTCTCCAGCTACACCAGTTAGATTATCAAATATACAAATACAAGCTCAAGCAGAACTTGAACGTCGACATAGATCATCTTCACATGGACATAGTTTAGATAGAAAATCTGTATATAGCACAGGAATGACAGAAAGTCATTTATCCAAAGGTTTAAGTGATTATCATCAAGGTTATGAAGGAATTGGTTATTCATATGATAATCGTGGAAGATTAATACATGGTGGTGCATGTTTACCTGAACGTTCAGCTAGTCGTAAACGTCGATTATTAGATGGTCATGAAAGTTTATCAAGAGTATGGATACCACAAAGTGGTGAACAGTATCCAGTTAAACAAATACCTGATAGAACAGCTAGTTCTCTAACGAATCGTGATGAACGACAAGCTCAATTAGATAATTCAGCTATGGCATTTGCTTTACGAGATTTTACTGTACCAAAAATTCGGTGAGCTCAAACAATATAACACTAATATTCATATTACATCTAATAATATTGTCTATCTATCTAGACAGAAACGGGTTTCCAATAAGTCACATCGGAATCATGATGATGATGATGATGCTAATGCTACTACTACTCATAAAAATAATAAAGACCATGGATATAATGANTATAACGATAATAATGTTGATAAACATGTAACCAATC]

[+] EMBL CD080844             [GGCCANAATTTGGCACGAGGTATCGTTCGGTGATCATCCTGTACCATCGGAACGTACACTCTCTCCAGCTACACCAGTTAGATTATCAAATATACAAATACAAGCTCAAGCAGAACTTGAACGTCGACATAGATCATCTTCACATGGACATAGTTTAGATAGAAAATCTGTATATAGCACAGGAATGACAGAAAGTCATTTATCCAAAGGTTTAAGTGATTATCATCAAGGTTATGAAGGAATTGGTTATTCATATGATAATCGTGGAAGATTAATACATGGTGGTGCATGTTTACCTGAACGTTCAGCTAGTCGTAAACGTCGATTATTAGATGGTCATGAAAGTTTATCAAGAGTATGGATACCACAAAGTGGTGAACAGTATCCAGTTAAACAAATACCTGATAGAACAGCTAGTTCTCTAACGAATCGTGATGAACGACAAGCTCAATTAGATAATTCAGCTATGGCATTTGCTTTACGAGATTTTACTGTACCAAAAATTCGGTGAGCTCAAACAATATAACACTAATATTCATATTACATCTAATAATATTGTCTATCTATCTAGACAGAAACGGGTTTCCAATAAGTCACATCGGAATCATGATGATGATGATGATGCTAATGCTACTACTACTCATAAAAATAATAAAGACCATGGATATAATGANTATAACGATAATAATGTTGATAAACATGTAACCAATC]




>consensus_8947#0
GGCCANAATTTGGCACGAGGTATCGTTCGGTGATCATCCTGTACCATCGGAACGTACACT
CTCTCCAGCTACACCAGTTAGATTATCAAATATACAAATACAAGCTCAAGCAGAACTTGA
ACGTCGACATAGATCATCTTCACATGGACATAGTTTAGATAGAAAATCTGTATATAGCAC
AGGAATGACAGAAAGTCATTTATCCAAAGGTTTAAGTGATTATCATCAAGGTTATGAAGG
AATTGGTTATTCATATGATAATCGTGGAAGATTAATACATGGTGGTGCATGTTTACCTGA
ACGTTCAGCTAGTCGTAAACGTCGATTATTAGATGGTCATGAAAGTTTATCAAGAGTATG
GATACCACAAAGTGGTGAACAGTATCCAGTTAAACAAATACCTGATAGAACAGCTAGTTC
TCTAACGAATCGTGATGAACGACAAGCTCAATTAGATAATTCAGCTATGGCATTTGCTTT
ACGAGATTTTACTGTACCAAAAATTCGGTGAGCTCAAACAATATAACACTAATATTCATA
TTACATCTAATAATATTGTCTATCTATCTAGACAGAAACGGGTTTCCAATAAGTCACATC
GGAATCATGATGATGATGATGATGCTAATGCTACTACTACTCATAAAAATAATAAAGACC
ATGGATATAATGANTATAACGATAATAATGTTGATAAACATGTAACCAATC

consensusID : consensus_8947#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 516
fasta sequence

                              [GAAGATCTGAACCCGAACCTTCCAATAATTATCCACCTGTACAATTAAGACGACCATCAAAAGGACAAAAAACTGGACAATCAATTACATCAATTCGTGATAGTCTTATCAGTCCTGAAGTGTTGAAGGATACAAGTTCAAAACACAGTTTAATAATCAGTACAAAACGTCGAACACTAAGCGGTTTAACTGGTACCCATCCATCAAAACATCGTTCCAG-TTCAATGAATACTTTATGGTTCGGTGATCATCCTGTACCATCGGAACGTACACTCTCTCCAGCTACACCAGTTAGATTATCAAATATACAAATACAAGCTCAAGCAGAACTTGAACGTCGACATAGATCATCTTCACATGGACATAGTTTAGATAGAAAATCTGTATATAGCACAGGAATGACAGAAAGTCATTTATCCAAAGGTTTAAGTGATTATCATCAAGGTTATGAAGGAATTGGTTATTCATATGATAATCGTGGAAGATTAATACATGGTGGTGCATGTTTACCTGAAC]

[+] EMBL CD168755             [GAAGATCTGAACCCGAACCTTCCAATAATTATCCACCTGTACAATTAAGACGACCATCAAAAGGACAAAAAACTGGACAATCAATTACATCAATTCGTGATAGTCTTATCAGTCCTGAAGTGTTGAAGGATACAAGTTCAAAACACAGTTTAATAATCAGTACAAAACGTCGAACACTAAGCGGTTTAACTGGTACCCATCCATCAAAACATCGTTCCAG TTCAATGAATACTTTATGGTTCGGTGATCATCCTGTACCATCGGAACGTACACTCTCTCCAGCTACACCAGTTAGATTATCAAATATACAAATACAAGCTCAAGCAGAACTTGAACGTCGACATAGATCATCTTCACATGGACATAGTTTAGATAGAAAATCTGTATATAGCACAGGAATGACAGAAAGTCATTTATCCAAAGGTTTAAGTGATTAT                                                                               ]
[-] EMBL CD193617             [                                                                                                                                                                                         cTAACTGGTACNCATCCATCAAAACATCG TCCAGTTTCAATGAATACTTTATGGTTCGGTGATCATCCTGTACCATCGGAACGTACACTCTCTCCAGCTACACCAGTTAGATTATCAAATATACAAATACAAGCTCAAGCAGAACTTGAACGTCGACATAGATCATCTTCACATGGACATAGTTTAGATAGAAAATCTGTATATAGCACAGGAATGACAGAAAGTCATTTATCCAAAGGTTTAAGTGATTATCATCAAGGTTATGAAGGAATTGGTTATTCATATGATAATCGTGGAAGATTAATACATGGTGGTGCATGTTTACCTGAAC]




>consensus_8947#1
GAAGATCTGAACCCGAACCTTCCAATAATTATCCACCTGTACAATTAAGACGACCATCAA
AAGGACAAAAAACTGGACAATCAATTACATCAATTCGTGATAGTCTTATCAGTCCTGAAG
TGTTGAAGGATACAAGTTCAAAACACAGTTTAATAATCAGTACAAAACGTCGAACACTAA
GCGGTTTAACTGGTACCCATCCATCAAAACATCGTTCCAGTTCAATGAATACTTTATGGT
TCGGTGATCATCCTGTACCATCGGAACGTACACTCTCTCCAGCTACACCAGTTAGATTAT
CAAATATACAAATACAAGCTCAAGCAGAACTTGAACGTCGACATAGATCATCTTCACATG
GACATAGTTTAGATAGAAAATCTGTATATAGCACAGGAATGACAGAAAGTCATTTATCCA
AAGGTTTAAGTGATTATCATCAAGGTTATGAAGGAATTGGTTATTCATATGATAATCGTG
GAAGATTAATACATGGTGGTGCATGTTTACCTGAAC

consensusID : consensus_8947#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 317
fasta sequence

                              [AGAAGGAATTGACATACCTTCAGGACTGATAAGACTATCACGAATTGATGTAATTGATTGTCCAGTTTTTTGTCCTTTTGATGGTCGTCTTAATTGTACAGGTGGATAATTATTGGAAGGTTCGGGTTCAGATCTTCTCCTTGTCTGAGTTATTGTACGCAATGCTGGCGGTTTAAGTTCTTCATCCGATTCCCCTGAATCATCATAATCACTTTCATCCGATGTATATTGATCATAATAATCAGGTATTTGATCGGATATTCTATCACTGGTTCTAGGTTTGCTTGGTTGATTAATTGTATCACCCAATCTAGGAT]

[+] EMBL CD120237             [AGAAGGAATTGACATACCTTCAGGACTGATAAGACTATCACGAATTGATGTAATTGATTGTCCAGTTTTTTGTCCTTTTGATGGTCGTCTTAATTGTACAGGTGGATAATTATTGGAAGGTTCGGGTTCAGATCTTCTCCTTGTCTGAGTTATTGTACGCGATGCTGGCGGTTTAAGTTCTTCATCCGATTCCCCTGAATCATCATAATCACTTTCATCCGATGTATATTGATCATAATAATCAGGTATTTGATCGGATATTCTATCACTGGTTCTAGGTTTGCTTGGGTGATTAATTGTATCACCCAATCTAGGA ]
[-] EMBL CD120372             [ GAAGGAATTGACATACCTTCAGGACTGATAAGACTATCACGAATTGATGTAATTGATTGTCCAGTTTTTTGTCCTTTTGATGGTCGTCTTAATTGTACAGGTGGATAATTATTGGAAGGTTCGGGTTCAGATCTTCTCCTTGTCTGAGTTATTGTACGCAATGCTGGCGGTTTAAGTTCTTCATCCGATTCCCCTGAATCATCATAATCACTTTCATCCGATGTATATTGATCATAATAATCAGGTATTTGATCGGATATTCTATCACTGGTTCTAGGTTTGCTTGGTTGATTAATTGTATCACCCAATCTAGGAT]
[-] EMBL CD120428             [ GAAGGAATTGACATACCTTCAGGACTGATAAGACTATCACGAATTGATGTAATTGATTGTCCAGTTTTTTGTCCTTTTGATGGTCGTCTTAATTGTACAGGTGGATAATTATTGGAAGGTTCGGGTTCAGATCTTCTCCTTGTCTGAGTTATTGTACGCAATGCTGGCGGTTTAAGTTCTTCATCCGATTCCCCTGAATCATCATAATCACTTTCATCCGATGTATATTGATCATAATAATCAGGTATTTGATCGGATATTCTATCACTGGTTCTAGGTTTGCTTGGTTGATTAATTGTATCACCCAATCTAGGAT]
[-] EMBL CD120425             [ GAAGGAATTGACATACCTTCAGGACTGATAAGACTATCACGAATTGTTGTAATTGATTGTCCAGTTTTTTGTCCTTTTGATGGTCGTCTTAATTGTACAGGTGGATAATTATTGGAAGGTTCGGGTTCAGATCTTCTCCTTGTCTGAGTTATTGTACGCAATGCTGGCGGTTTAAGTTCTTCATCCGATTCCCCTGAATCATCATAATCACTTTCATCCGATGTATATTGATCATAATAATCAGGTATTTGATCGGATATTCTATCACTGGTTCTAGGTTTGCTTGGTTGATTAATTGTATCACCCAATCTAGGAT]




>consensus_8947#2
AGAAGGAATTGACATACCTTCAGGACTGATAAGACTATCACGAATTGATGTAATTGATTG
TCCAGTTTTTTGTCCTTTTGATGGTCGTCTTAATTGTACAGGTGGATAATTATTGGAAGG
TTCGGGTTCAGATCTTCTCCTTGTCTGAGTTATTGTACGCAATGCTGGCGGTTTAAGTTC
TTCATCCGATTCCCCTGAATCATCATAATCACTTTCATCCGATGTATATTGATCATAATA
ATCAGGTATTTGATCGGATATTCTATCACTGGTTCTAGGTTTGCTTGGTTGATTAATTGT
ATCACCCAATCTAGGAT

consensusID : consensus_8947#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 168
fasta sequence

                              [GATGGTACAGGATGATCACCGAACCATAAAGTATTCATTGAACTGGAACGATGTTTTGATGGATGGGTACCAGTTAAACCGCTTAGTGTTCGACGTTTTGTACTGATTATTAAACTGTGTTTTGAACCATTAATACCGTAATAACCAGAACTTCGACTTGTTGCAGTT]

[+] EMBL CD191715             [GATGGTACAGGATGATCACCGAACCATAAAGTATTCATTGAACTGGAACGATGTTTTGATGGATGGGTACCAGTTAAACCGCTTAGTGTTCGACGTTTTGTACTGATTATTAAACTGTGTTTTGAACCATTAATACCGTAATAACCAGAACTTCGACTTGTTGCAGTT]




>consensus_8947#3
GATGGTACAGGATGATCACCGAACCATAAAGTATTCATTGAACTGGAACGATGTTTTGAT
GGATGGGTACCAGTTAAACCGCTTAGTGTTCGACGTTTTGTACTGATTATTAAACTGTGT
TTTGAACCATTAATACCGTAATAACCAGAACTTCGACTTGTTGCAGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8947#0      ------------------------------------------------------------
consensus_8947#1      GAAGATCTGAACCCGAACCTTCCAATAATTATCCACCTGTACAATTAAGACGACCATCAA 60
consensus_8947#3      ------------------------------------------------------------
consensus_8947#2      ------------------------------------------------------------
                                                                                  

consensus_8947#0      ------------------------------------------------------------
consensus_8947#1      AAGGACAAAAAACTGGACAATCAATTACATCAATTCGTGATAGTCTTATCAGTCCTGAAG 120
consensus_8947#3      ------------------------------------------------------------
consensus_8947#2      ------------------------------------------------------------
                                                                                  

consensus_8947#0      ------------------------------------------------------------
consensus_8947#1      TGTTGAAGGATACAAGTTCAAAACACAGTTTAATAATCAGTACAAAACGTCGAACACTAA 180
consensus_8947#3      ------------------------------------------------------------
consensus_8947#2      ------------------------------------------------------------
                                                                                  

consensus_8947#0      --------------------------------GGCCANAATTTGGC--ACGAGGTATCGT 26
consensus_8947#1      GCGGTTTAACTGGTACCCATCCATCAAAACATCGTTCCAGTTCAATGAATACTTTATGGT 240
consensus_8947#3      ------------------------------------------------------------
consensus_8947#2      -----------------------AGAAGGAATTGACATACCTTCAGGACTGATAAGACTA 37
                                                                                  

consensus_8947#0      TCGGTGATCATCCTGTACCATCGGAACGTACACTCTCTCCAGCTACACCAGTTAGATTAT 86
consensus_8947#1      TCGGTGATCATCCTGTACCATCGGAACGTACACTCTCTCCAGCTACACCAGTTAGATTAT 300
consensus_8947#3      ------------------------------------------------------------
consensus_8947#2      TCACGAATTGATGTAATTGATTGTCCAGTTTTTTGTCCTTTTGATGGTCGTCTTAATTGT 97
                                                                                  

consensus_8947#0      CAAATATACAAATACAAGCTCAAGCAGAACTTGAACGTCGACATAGATCATCTTCACATG 146
consensus_8947#1      CAAATATACAAATACAAGCTCAAGCAGAACTTGAACGTCGACATAGATCATCTTCACATG 360
consensus_8947#3      --------------------------------GATGGTACAGGATGATCACCGAACCATA 28
consensus_8947#2      ACAGGTGGATAATTATTGGAAGGTTCGGGTTCAGATCTTCTCCTTGTCTGAGTTATTGTA 157
                                                           *       *            * 

consensus_8947#0      GA-CATAGTTTAGATAGAAAATCTGTATATAGCACAGGAATGACAGA-AAGTCATTTA-- 202
consensus_8947#1      GA-CATAGTTTAGATAGAAAATCTGTATATAGCACAGGAATGACAGA-AAGTCATTTA-- 416
consensus_8947#3      AAGTATTCATTGAACTGGAACGATGTTT-TGATGGATGGGTACCAGTTAAACCGCTTAGT 87
consensus_8947#2      CGCAATGCTGGCGGTTTAAGTTCTTCATCCGATTCCCCTGAATCATCATAATCACTTT-C 216
                          **            *    *   *               **    *  *  **   

consensus_8947#0      -TCCAAAGGTT-TAAGTGATTATCATCAAGGTTATGAAGGAATTGGTTATTCATA-TGAT 259
consensus_8947#1      -TCCAAAGGTT-TAAGTGATTATCATCAAGGTTATGAAGGAATTGGTTATTCATA-TGAT 473
consensus_8947#3      GTTCGACGTTT-T--GTACTGATTATTAAA-CTGTGTTTTGAACCATTAATACCG-TAAT 142
consensus_8947#2      ATCCGATGTATATTGATCATAATAATCAGGTATTTGATCGGATATTCTATCACTGGTTCT 276
                       * * * *  * *   *  * ** ** *    * **     *     **       *  *

consensus_8947#0      AATCGTGGAAGATTAATACATGGTGGTGCATGTTTACCTGAACGTTCAGCTAGTCGTAAA 319
consensus_8947#1      AATCGTGGAAGATTAATACATGGTGGTGCATGTTTACCTGAAC----------------- 516
consensus_8947#3      AACC--AGAACTTCGACTTGTTGCAGTT-------------------------------- 168
consensus_8947#2      AGGTTTGCTTGGTTGATTAATTGTATCACCCAATCTAGGAT------------------- 317
                      *           *  *    * *                                     

consensus_8947#0      CGTCGATTATTAGATGGTCATGAAAGTTTATCAAGAGTATGGATACCACAAAGTGGTGAA 379
consensus_8947#1      ------------------------------------------------------------
consensus_8947#3      ------------------------------------------------------------
consensus_8947#2      ------------------------------------------------------------
                                                                                  

consensus_8947#0      CAGTATCCAGTTAAACAAATACCTGATAGAACAGCTAGTTCTCTAACGAATCGTGATGAA 439
consensus_8947#1      ------------------------------------------------------------
consensus_8947#3      ------------------------------------------------------------
consensus_8947#2      ------------------------------------------------------------
                                                                                  

consensus_8947#0      CGACAAGCTCAATTAGATAATTCAGCTATGGCATTTGCTTTACGAGATTTTACTGTACCA 499
consensus_8947#1      ------------------------------------------------------------
consensus_8947#3      ------------------------------------------------------------
consensus_8947#2      ------------------------------------------------------------
                                                                                  

consensus_8947#0      AAAATTCGGTGAGCTCAAACAATATAACACTAATATTCATATTACATCTAATAATATTGT 559
consensus_8947#1      ------------------------------------------------------------
consensus_8947#3      ------------------------------------------------------------
consensus_8947#2      ------------------------------------------------------------
                                                                                  

consensus_8947#0      CTATCTATCTAGACAGAAACGGGTTTCCAATAAGTCACATCGGAATCATGATGATGATGA 619
consensus_8947#1      ------------------------------------------------------------
consensus_8947#3      ------------------------------------------------------------
consensus_8947#2      ------------------------------------------------------------
                                                                                  

consensus_8947#0      TGATGCTAATGCTACTACTACTCATAAAAATAATAAAGACCATGGATATAATGANTATAA 679
consensus_8947#1      ------------------------------------------------------------
consensus_8947#3      ------------------------------------------------------------
consensus_8947#2      ------------------------------------------------------------
                                                                                  

consensus_8947#0      CGATAATAATGTTGATAAACATGTAACCAATC 711
consensus_8947#1      --------------------------------
consensus_8947#3      --------------------------------
consensus_8947#2      --------------------------------