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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8949#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1004 fasta sequence
[CCCTCGAGCCAANAATTCGGCACGAGGAATTTGATGACATAAGAGAAATGTTACGTCACATGTACACACCTGGTGGTTGTGATATGACAGTCGAAACAGCGGAAAAGTTGCTGCCCATTTTACATCGATACCAAATCGATTCTATGGTTAGCTTTGGCTTAGAGGACACTTACATTTCGTCTCAATGATGTGACGGCACCATTGTTTCTTCGAATAGCTGACTTATATGGTTTGAGTAGATTACGACAAGCCGCTTTGGATTCTTGTGCTCGTTTAGATTATGGTCGAATGGTTAAAGCGTTTGAAGAAATAAATCTATCAATAGAACTTAAAAATGAAGTACTTGAGAGAAGAATAAAAGTTTTAGAAAAATGTCTTGTAGATATTCAACAGAGTTTTACTCATTCGTGTTCACGTATGGAAAGTCGTGCTGAACGTGTTCCATCCAATCATTGTTCATTACATTG-TCGTCCGTTTTCAACAATCACTTTTAGTCCTGTTGTAAACAGTGCAACAGGACCACCAATCAATAATAGTGCAGATCAAAATTTACAGAATAATAATGTCAATGATACTGTGCATAATGACGTAGCTGCAAGCATAATGCCATTTTCAGTTGCTAGAAATGTGGAAATACGTACAAGTGGGGATAATGGTAATAATGATACTACACAAAGAGAAGCAGATACAAATTTATCCAATACAGCTACTACTGCAGTGATACCATCAATTCCTAATACT-CCATTAATTACAGCTGTTTGTGAACAATGTGTAGAAC-ATTNCA-AACTCATATACAGGAA-TTGTGTNAAAGAGGATTGCAT-AN-ATACCGA-TATCACTTGCAGAAATCCTGATTCATGATTCCNTNATTGGTTTACAAAATCTTTTTTCTANAGACTTAAAGTCGACATTTCCTCAAGATCTCGTCGGTGGAACAGTTAGTACCTATGACTACTACATTTTTCTGACGAAAGACTTGTTTTAGATATTCTTCTTTCGGATGAACA]
[+] EMBL CD081976 [CCCTCGAGCCAANAATTCGGCACGAGGAATTTGATGACATAAGAGAAATGTTACGTCACATGTACACACCTGGTGGTTGTGATATGACAGTCGAAACAGCGGAAAAGTTGCTGCCCATTTTACATCGATACCAAATCGATTCTATGGTTAGCTTTGGCTTAGAGGACACTTACATTTCGTCTCAATGATGTGACGGCACCATTGTTTCTTCGAATAGCTGACTTATATGGTTTGAGTAGATTACGACAAGCCGCTTTGGATTCTTGTGCTCGTTTAGATTATGGTCGAATGGTTAAAGCGTTTGAAGAAATAAATCTATCAATAGAACTTAAAAATGAAGTACTTGAGAGAAGAATAAAAGTTTTAGAAAAATGTCTTGTAGATATTCAACAGAGTTTTACTCATTCGTGTTCACGTATGGAAAGTCGTGCTGAACGTGTTCCATCCAATCATTGTTCATTACATTGNTCGTCCGTTTTCAACAATCACTTTTAGTCCTGTTGTAAACAGTGCAACAGGACCACCAATCAATAATAGTGCAGATCAAAATTTACAGAATAATAATGTCAATGATACTGTGCATAATGACGTAGCTGCAAGCATAATGCCATTTTCAGTTGCTAGAAATGTGGAAATACGTACAAGTGGGGATAATGGNTATAATGATACTACACANAGAGAAGCAGATACAAATTTATCCAATACAGCTACTACTGCAGTGATACCATCAATTCCTAATACTNNCATT ATTACAGCTGTTTGTGAACCATGTGTANAAC ATTNCA AACTCATATACGGNAATTTGTGT ANAGAGGATTGCAT AN ATACCGA TATCACTTGCAGAAATCCTGATTCATGATTCCNTNATTGGTTTACAAAATCTTTTTTCTANAGACTTAAAGTCGACATTTCCTCAAGATCTCGTCGGTGGAACAGTTAGTACCTATGACTACTACATTTTTCTGACGAAAGACTTGTTTTAGATATTCTTCTTTCGGATGAACA]
[-] EMBL CD068562 [ GATGAATTTGATGACATAAGAGAAATGTTACGTCACATGTACACACCTGGTGGTTGTGATATGACAGTCGAAACAGCGGAAAAGTTGCTGCCCATTTTACATCGATACCAAATCGATTCTATGGTTAGC TTGGCTGAGAGGACACTTACATTTCGTCTCAATGATGTGACGGCACCATTGTTTCTTCGAATAGCTGACTTATATGGTTTGAGTAGATTACGACAAGCCGCTTTGGATTCTTGTGCTCGTTTAGATTATGGTCGAATGGTTAAAGCGTTTGAAGAAATAAATCTATCAATAGAACTTAAAAATGAAGTACTTGAGAGAAGAATAAAAGTTTTAGAAAAATGTCTTGTAGATATTCAACAGAGTTTTACTCATTTGTGTTCACGTATGGAAAGTCGTGCTGAACGTGTTCCATCC ATCATTGTTCATTACATTG TCGTTCGTTTTCAACAATCACTTTTAGTCCTGTTGTAAACAGTGCGACA GA CACCA ]
[+] EMBL CD078306 [ GGTTTGAGTAGATTACGACAAGCCGCTTTGGATTCTTGTGCTCGTTTAGATTATGGTCGAATGGTTAAAGCGTTTGAAGAAATAAATCTATCAATAGAACTTAAAAATGAAGTACTTGAGAGAAGAATAAAAGTTTTAGAAAAATGTCTTGTAGATATTCAACAGAGTTTTACTCATTCGTGTTCACGTATGGAAAGTCGTGCTGAACGTGTTCCATCCAATCATTGTTCATTACATTG TCGTCCGTTTTCAACAATCACTTTTAGTCCTGTTGTAAACAGTGCAACAGGACCACCAATCAATAATAGTGCAGATCAAAATTTACAGAATAATAATGTCAATGATACTGTGCATAATGACGTAGCTGCAAGCATAATGCCATTTTCAGTTGCTAGAAATGTGGAAATACGTACAAGTGGGGATAATGGTAATAATGATACTACACAAAGAGAAGCAGATACAAATTTATCCAATACAGCTACTACTGCAGTGATACCATCAATTCCTAATACT CCATTAATTACAGCTGTTTGTGAACAATGTGTAGAACAATTCAA AACTCATATACAGGAA TTGTGTNAAAGAGGATTGCAT ANAATACCGATTATCACTTGCAGAAATCC ]
[+] EMBL CD078394 [ GGTTTGAGTAGATTACGACAAGCCGCTTTGGATTCTTGTGCTCGTTTAGATTATGGTCGAATGGTTAAAGCGTTTGAAGAAATAAATCTATCAATAGAACTTAAAAATGAAGTACTTGAGAGAAGAATAAAAGTTTTAGAAAAATGTCTTGTAGATATTCAACAGAGTTTTACTCATTCGTGTTCACGTATGGAAAGTCGTGCTGAACGTGTTCCATCCAATCATTGTTCATTACATTG TCGTCCGTTTTCAACAATCACTTTTAGTCCTGTTGTAAACAGTGCAACAGGACCACCAATCAATAATAGTGCAGATCAAAATTTACAGAATAATAATGTCAATGATACTGTGCATAATGACGTAGCTGCAAGCATAATGCCATTTTCAGTTGCTAGAAATGTGGAAATACGTACAAGTGGGGATAATGGTAATAATGATACTACACAAAGAGAAGCAGATACAAATTTATCCAATACAGCTACTACTGCAGTGATACCATCAATTCCTAATACT CCATTAATTACAGCTGTTTGTGAACAATGTGTAGAAC AATTCANAACTCATATACAGGAA TTGTGTAAAAGAGGATTGCATAAA ATACCGA Ttat ]
consensusID : consensus_8949#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 696 fasta sequence
[TCCTGTTGTAAACAGTGCAACAGGACCCCCAATCAATAATAGTGCAGATCAAAATTTACAGAATAATAATGTCAATGATACTGTGCATAATGACGTAGCTGCAAGCATAATGCCATTTTCAGTTGCTAGAAATGTGGAAATACGTACAAGTGGGGATAATGGTAATAATGATACTACACAAAGAGAAGCAGATACAAATTTATCCAATACAGCTACTACTGCAGTGATACCATCAATTCCTAATACTCCATTAATTACAGCTGTTTGTGAACAATGTGTAGAACAATTCAAAACTCATATACAGGAATTGTGTAAAAGAGGATTGCATAAAATACCGATTATCACTTGCAGAAATCCTTGATTTCATGTATTCCCTTATTGTTTTTACAAAATTCTTTTTTTCTTAGAGACTATAGAGTCAGAACATTTTCACTCCAAGATACTCAGTCGAGTGAAACAAGTTTAGTAACACATCATGACATACGTAACATATCTATTCATAGACTGAAAAAGAACATCTGTTTATTTCAAGAATTATTTCATTTCATTTCGGTTATATGAAACAATATAATATTATCTTAATAAACACTTTGTTAAACTCAGTTGTATGAGAACAAAATGGTAGTTTGGGTGAAGTTTCATTTACTTTGGTAGCTTATATTTCTCAATGTCCTAAGCGCTACTTAACAATGCATC]
[-] EMBL CD072956 [TCCTGTTGTAAACAGTGCAACAGGACCCCCAATCAATAATAGTGCAGATCAAAATTTACAGAATAATAATGTCAATGATACTGTGCATAATGACGTAGCTGCAAGCATAATGCCATTTTCAGTTGCTAGAAATGTGGAAATACGTACAAGTGGGGATAATGGTAATAATGATACTACACAAAGAGAAGCAGATACAAATTTATCCAATACAGCTACTACTGCAGTGATACCATCAATTCCTAATACTCCATTAATTACAGCTGTTTGTGAACAATGTGTAGAACAATTCAAAACTCATATACAGGAATTGTGTAAAAGAGGATTGCATAAAATACCGATTATCACTTGCAGAAATCCTTGATTTCATGTATTCCCTTATTGTTTTTACAAAATTCTTTTTTTCTTAGAGACTATAGAGTCAGAACATTTTCACTCCAAGATACTCAGTCGAGTGAAACAAGTTTAGTAACACATCATGACATACGTAACATATCTATTCATAGACTGAAAAAGAACATCTGTTTATTTCAATAATTATTTCATTTCATTTCGGTTATATGAAACAATATAATAT ]
[+] EMBL CD082476 [ CGTAGCTGCAAGCATAATGCCATTTTCAGTTGCTAGAAATGTGGAAATACGTACAAGTGGGGATAATGGTAATAATGATACTACACAAAGAGAAGCAGATACAAATTTATCCAATACAGCTACTACTGCAGTGATACCATCAATTCCTAATACTCCATTAATTACAGCTGTTTGTGAACAATGTGTAGAACAATTCAAAACTCATATACAGGAATTGTGTAAAAGAGGATTGCATAAAATACCGATTATCACTTGCAGAAATCCTTGATTTCATGTATTCCCTTATTGTTTTTACAAAATTCTTTTTTTCTTAGAGACTATAGAGTCAGAACATTTTCACTCCAAGATACTCAGTCGAGTGAAACAAGTTTAGTAACACATCATGACATACGTAACATATCTATTCATAGACTGAAAAAGAACATCTGTTTATTTCAAGAATTATTTCATTTCATTTCGGTTATATGAAACAATATAATATTATCTTAATAAACACTTTGTTAAACTCAGTTGTATGAGAACAAAATGGTAGTTTGGGTGAAGTTTCATTTACTTTGGTAGCTTATATTTCTCAATGTCCTAAGCGCTACTTAACAATGCAT ]
[-] EMBL CD076074 [ GTAGCTGCAAGCATAATGCCATTTTCAGTTGCTAGAAATGTGGAAATACGTACAAGTGGGGATAATGGTAATAATGATACTACACAAAGAGAAGCAGATACAAATTTATCCAATACAGCTACTACTGCAGTGATACCATCAATTCCTAATACTCCATTAATTACAGCTGTTTGTGAACAATGTGTAGAACAATTCAAAACTCATATACAGGAATTGTGTAAAAGAGGATTGCATAAAATACCGATTATCACTTGCAGAAATCCTTGATTTCATGTATTCCCTTATTGTTTTTACAAAATTCTTTTTTTCTTAGAGACTATAGAGTCAGAACATTTTCACTCCAAGATACTCAGTCGAGTGAAACAAGTTTAGTAACACATCATGACATACGTAACATATCTATTCATAGACTGAAAAAGAACATCTGTTTATTTCAAGAATTATTTCATTTCATTTCGGTTATATGAAACAATATAATATTATCTTAATAAACACTTTGTTAAACTCAGTTGTATGAGAACAAAATGGTAGTTTGGGTGAAGTTTCATTTACTTTGGTAGCTTATATTTCTCAATGTCCTAAGCGCTACTTAACAATGCATC]
consensusID : consensus_8949#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 676 fasta sequence
[TAAGTTGCACGGCTCCAAATGTGAGCGAAATCGCCATACAAGCCGATTGTGACGTTGATGATACTGAACCGCAGAAAGATGAACATGACGTGTTAGACTTTAGCAGTCCATTTCTATTCAGTGATGCTGTTCTGATTGTTCAGGGTAGAAATCTTCATTGTCATCGTGCTATTCTATCCATATATTCACCAGTATTCAAAGCTATGTTTCAAAATCGATGCATTGAAAATCAAAAAAATGAAGTTGTTATACCAGTTGATGAATTTGATGACATAAGAGAAATGTTACGTCACATGTACACACCTGGTGGTTGTGATATGACAGGTATGTTATTTCATTTTAGTTTGACTGCTCATTTTATTAATTACATTTACATAATCTGTCTAACAAATACGTGGACTTAATTTTTCTAGCATTCGCGGTATTCCCCATTAGGTTTTTCTCACTAGGGGGCANACGGTGGTGCTGAATTCTACGTGGAGTTTCTTAGAATGTCTATGGATCGCGTACAAATAGATTCTTGTGTTGCTGGTGAATTACTGTTGCATAAAAACAATACACCTTAGTATTTACCCATGATTGTCTATAAATGTGGCTTGTAGCGGCTGCCTGTNACACATATGTGTATTTATTGCAACTTCTAGACAGACGCATCATTGGTTATTCTGTAACTCCC]
[+] EMBL CD148289 [TAAGTTGCACGGCTCCAAATGTGAGCGAAATCGCCATACAAGCCGATTGTGACGTTGATGATACTGAACCGCAGAAAGATGAACATGACGTGTTAGACTTTAGCAGTCCATTTCTATTCAGTGATGCTGTTCTGATTGTTCAGGGTAGAAATCTTCATTGTCATCGTGCTATTCTATCCATATATTCACCAGTATTCAAAGCTATGTTTCAAAATCGATGCATTGAAAATCAAAAAAATGAAGTTGTTATACCAGTTGATGAATTTGATGACATAAGAGAAATGTTACGTCACATGTACACACCTGGTGGTTGTGATATGACAGGTATGTTATTTCATTTTAGTTTGACTGCTCATTTTATTAATTACATTTACATAATCTGTCTAACAAATACGTGGACTTAATTTTTCTAGCATTCGCGGTATTCCCCATTAGGTTTTTCTCACTAGGGGGCANACGGTGGTGCTGAATTCTACGTGGAGTTTCTTAGAATGTCTATGGATCGCGTACAAATAGATTCTTGTGTTGCTGGTGAATTACTGTTGCATAAAAACAATACACCTTAGTATTTACCCATGATTGTCTATAAATGTGGCTTGTAGCGGCTGCCTGTNACACATATGTGTATTTATTGCAACTTCTAGACAGACGCATCATTGGTTATTCTGTAACTCCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8949#0 CCCTCGAGCCAANAATTCGGCACGAGGAATTTGATGACATAAGAGAAATGTTACGTCACA 60
consensus_8949#1 ------------------------------------------------------------
consensus_8949#2 ------------------------------------------------------------
consensus_8949#0 TGTACACACCTGGTGGTTGTGATATGACAGTCGAAACAGCGGAAAAGTTGCTGCCCATTT 120
consensus_8949#1 ------------------------------------------------------------
consensus_8949#2 ------------------------------------------------------------
consensus_8949#0 TACATCGATACCAAATCGATTCTATGGTTAGCTTTGGCTTAGAGGACACTTACATTTCGT 180
consensus_8949#1 ------------------------------------------------------------
consensus_8949#2 ------------------------------------------------------------
consensus_8949#0 CTCAATGATGTGACGGCACCATTGTTTCTTCGAATAGCTGACTTATATGGTTTGAGTAGA 240
consensus_8949#1 ------------------------------------------------------------
consensus_8949#2 ------------------------------------------------------------
consensus_8949#0 TTACGACAAGCCGCTTTGGATTCTTGTGCTCGTTTAGATTATGGTCGAATGGTTAAAGCG 300
consensus_8949#1 ------------------------------------------------------------
consensus_8949#2 ----------------------------------------TAAGTTGCACGGCTCCAAAT 20
consensus_8949#0 TTTGAAGAAATAAATCTATCAATAGAACTTAAAAATGAAGTACTTGAGAGAAGAATAAAA 360
consensus_8949#1 ------------------------------------------------------------
consensus_8949#2 GTGAGCGAAATCGCCATACAAGCCGATTGTGACGTTGATGATACTGAACCGCAGAAAGAT 80
consensus_8949#0 GTTTTAGAAAAATGTCTTGTAGATATTCAACAGAGTTTTACTCATTCGTGTTCACGTATG 420
consensus_8949#1 ------------------------------------------------------------
consensus_8949#2 G-------AACATGACGTGTTAGACTTTAGCAGTCCATTTCTATTCAGTGATGCTGTTCT 133
consensus_8949#0 GAAAGTCGTGCTGAACGTGTTCCATCCAATCATTGTTCATTACATTGTCGTCCGTTTTCA 480
consensus_8949#1 ------------------------------------------------------------
consensus_8949#2 GATTGTTCAGGGTAGAAATCTTCATT--GTCATCGT--GCTATTCTATC-CATATATTCA 188
consensus_8949#0 ACAATCACTTTTAGTCCTGTTGTAAA--CAGTGCAACAGGACCACCAATCAATAATAGTG 538
consensus_8949#1 --------------TCCTGTTGTAAA--CAGTGCAACAGGACCCCCAATCAATAATAGTG 44
consensus_8949#2 CCAGT-ATTCAAAGCTATGTTTCAAAATCGATGCATTGAAA------ATCAA-AAAAATG 240
**** *** * **** * ***** ** * **
consensus_8949#0 CAGATCAAAATTTACAGAATAATAATGTCAATGATACTGTGCATA-ATGACGTAGC-TGC 596
consensus_8949#1 CAGATCAAAATTTACAGAATAATAATGTCAATGATACTGTGCATA-ATGACGTAGC-TGC 102
consensus_8949#2 AAGTT---GTTATACCAGTTGATGAATTTGATGACATAAGAGAAATGTTACGTCACATGT 297
** * * *** * ** * * **** * * * * **** * **
consensus_8949#0 AAGCATAATGCCATTTTCAGTTGCTAGAAATGTGGAAATACGTACAAGTGGG-GATAATG 655
consensus_8949#1 AAGCATAATGCCATTTTCAGTTGCTAGAAATGTGGAAATACGTACAAGTGGG-GATAATG 161
consensus_8949#2 ACACACCTGGTGGTTGTGATATGACAGGTATGTTATTTCATTTTAGTTTGACTGCTCATT 357
* ** * ** * * ** ** **** * * ** * * **
consensus_8949#0 GTAATAATGATACT-ACACAAAGAGAAGCAGATACAAATTTATCCAATACAGCTACTACT 714
consensus_8949#1 GTAATAATGATACT-ACACAAAGAGAAGCAGATACAAATTTATCCAATACAGCTACTACT 220
consensus_8949#2 TTATTAATTACATTTACATAATCTGTCTAACAAATACGTGGACTTAATTTTTCTAGCATT 417
** **** * * * *** ** * * * * * * * *** *** * *
consensus_8949#0 -GCAGTGATACC-ATCAATTCCTAATACTCCATTAATTACA-GCTGTTTGTGAACAATGT 771
consensus_8949#1 -GCAGTGATACC-ATCAATTCCTAATACTCCATTAATTACA-GCTGTTTGTGAACAATGT 277
consensus_8949#2 CGCGGTATTCCCCATTAGGTTTTTCT-CACTAGGGGGCANACGGTGGTGCTGAATTCTAC 476
** ** * ** ** * * * * * * * * * * ** * **** *
consensus_8949#0 GTAGAACATTNCAAA-CTCATATACAGGAATTGTGTNAAAGAGGATTGCATANA-TACCG 829
consensus_8949#1 GTAGAACAATTCAAAACTCATATACAGGAATTGTGTAAAAGAGGATTGCATAAAATACCG 337
consensus_8949#2 GTGGAGTTTCTTAGA----ATGTCTATGGATCGCGTACAAATAGATT-CTTGTGTTGCTG 531
** ** * * ** * * * ** * ** ** **** * * * * *
consensus_8949#0 AT--ATCACT--TGCA-GAAATCCTGA--TTCATG-ATTCCNTNATTGGTTT-ACAAAAT 880
consensus_8949#1 ATT-ATCACT--TGCA-GAAATCCTTGATTTCATGTATTCCCTTATTGTTTTTACAAAAT 393
consensus_8949#2 GTGAATTACTGTTGCATAAAAACAATACACCTTAGTATTTACCCATGATTGTCTATAAAT 591
* ** *** **** *** * * *** ** * * ****
consensus_8949#0 CTTTTTTCT---ANAGACT-TAAAGTCG--ACATTTCC---TCAAGAT-CTC-GTCG-GT 928
consensus_8949#1 TCTTTTTTTCTTAGAGACTATAGAGTCAGAACATTTTCACTCCAAGATACTCAGTCGAGT 453
consensus_8949#2 GTGGCTTGTAGCGGCTGCCTGTNACACAT-ATGTGTATTTATTGCAACTTCTAGACAGAC 650
** * * * * * * * * * *
consensus_8949#0 GGAACAG--TTAGTACC----TATGAC-TACTACATTTTTCTGACGAAAGACTTGTTTTA 981
consensus_8949#1 GAAACAAGTTTAGTAACACATCATGACATACGTAACATATCTATTCATAGACTGAAAAAG 513
consensus_8949#2 GCATCA---TTGGTTATTC--TGTAACTCCC----------------------------- 676
* * ** ** ** * ** *
consensus_8949#0 GATATTCTTCTTTCGGATGAACA------------------------------------- 1004
consensus_8949#1 AACATCTGTTTATTTCAAGAATTATTTCATTTCATTTCGGTTATATGAAACAATATAATA 573
consensus_8949#2 ------------------------------------------------------------
consensus_8949#0 ------------------------------------------------------------
consensus_8949#1 TTATCTTAATAAACACTTTGTTAAACTCAGTTGTATGAGAACAAAATGGTAGTTTGGGTG 633
consensus_8949#2 ------------------------------------------------------------
consensus_8949#0 ------------------------------------------------------------
consensus_8949#1 AAGTTTCATTTACTTTGGTAGCTTATATTTCTCAATGTCCTAAGCGCTACTTAACAATGC 693
consensus_8949#2 ------------------------------------------------------------
consensus_8949#0 ---
consensus_8949#1 ATC 696
consensus_8949#2 ---
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||