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Schistosoma mansoni
cluster # 8950 cluster # 8950       Sequences # 8       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8950#0 length = 970 sequences # 4  
consensus_8950#1 length = 781 sequences # 4  

consensusID : consensus_8950#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 970
fasta sequence
                              [CCTCCGAGGCCAGAATGCGGCACGAGGTCGACTCTGACAGTGATGATGACGACTCAATCGTTGATCAGAATGGTCGCGATGTTCTCGATAATTCCCCTCTATTCATAAATGAGCAAGATCAAGAATTAAACACCTATCAAATATTTCGAGATTATACAACAATATCACATGTAATTCTGGCTATTGGACCATTAACAAGTGCATTCGTAACCATTGGTACTGGTATTATCCATAAAAGTTTATCTATTATTAAAGTATCATATAAGAAAACTTCCCTAGTATTCAAAAGTTACTATCTTCCAGATTATGACAACACATTGATTATTTTTATTGAACATGAACCTAAATATTTGTGCTATGAACACAAGCATATCCTTTGTAATTACTTTCAACGTGTTTTTTGTCGTAATGAGAATTTCGATAAGGATAAAATTACTATAAAAGATATTAATGTACTATGTAGTCGTCCAGTGACTCAGTATTCTTCGAAATTGAAAACACCT-CCCCCTTTTATTAAATGTATACCAACTGATTCTGGATTAAGTAGTCGATTTCCAAAGCTGGAAGAACCGACAATTTTGACAGGTTTACCGGCTGAAGCGCTGAATTGGTTTTATTTCAAGTCATTACCAGTCAATGTATATATTGTATTTTATTTACCACAGGTTAGTATCTGTGAATGGTCTGCAGTGAAAGAGATATTCAACACTCTATTACCAGTTGGTATTGAAATTCTGCAAAAGCATTTTTCATCCGACAATCAATGGGACAATAAGTTATTGTGTGAAAAACTCAAGGAGATGTGTATTACTGCAGTTTGCAATAGTGAACGTGCTAAGACAGACCAAATGTATACTTGAGCTGCAATCAAACTGCCTTTTTTGTTTTTTTTAAACATGATTTTTTTATATTGTATTGAGTACTTTATATTAANTGTCAATAAAAAGTAGAAGCATCTAAAAAAAGTTAA]

[+] EMBL CD081336             [CCTCCGAGGCCAGAATGCGGCACGAGGTCGACTCTGACAGTGATGATGACGACTCAATCGTTGATCAGAATGGTCGCGATGTTCTCGATAATTCCCCTCTATTCATAAATGAGCAAGATCAAGAATTAAACACCTATCAAATATTTCGAGATTATACAACAATATCACATGTAATTCTGGCTATTGGACCATTAACAAGTGCATTCGTAACCATTGGTACTGGTATTATCCATAAAAGTTTATCTATTATTAAAGTATCATATAAGAAAACTTCCCTAGTATTCAAAAGTTACTATCTTCCAGATTATGACAACACATTGATTATTTTTATTGAACATGAACCTAAATATTTGTGCTATGAACACAAGCATATCCTTTGTAATTACTTTCAACGTGTTTTTTGTCGTAATGAGAATTTCGATAAGGATAAAATTACTATAAAAGATATTAATGTACTATGTAGTCGTCCAGTGACTCAGTATTCTTCGAAATTGAAAACACCT CCCCCTTTTATTAAATGTATACCAACTGATTCTGGATTAAGTAGTCGATTTCCAAAGCTGGAAGAACCGACAATTTTGACAGGTTTACCGGCTGAAGCGCTGAATTGGTTTTATTTCAAGTCATTACCAGTCAATGTATATATTGTATTTTATTTACCACAGGTTAGTATCTGTGAATGGTCTGCAGTGAAAGAGATATTCAACACTCTATTACCAGTTGGTATTGAAATTCTGCANAAGCATTTTTCATCCGACAATCAATGGGANCAT AGTTATTGTGTG AAAACTCAAGGAGATGTGTATTACTGCAGTTTGGCATAGTGAACGTGCTAAGAC GACC AATGTATACTTGAGCTGC ATCCAACTGGCTTTTTTGTTTTTTT  AACATGA TTTTTTA AATGGATTGAG ACTTNAT TTAANTG CCATAAAAg                        ]
[-] EMBL CD075169             [                                                                                                                                                                                                                                                                                                                                     TTTTATTGAACATGAACCTAAATATTTGTGCTATGAACACAAGCATATCCTTTGTAATTACTTTCAACGTGTTTTTTGTCGTAATGAGAATTTCGATAAGGATAAAATTACTATAAAAGATATTAATGTACTATGTAGTCGTCCAGTGACTCAGTATTCTTCGAAATTGAAAACACCT CCCCCTTTTATTAAATGTATACCAACTGATTCTGGATTAAGTAGTCGATTTCCAAAGCTGGAAGAACCGACAATTTTGACAGGTTTACCGGCTGAAGCGCTGAATTGGTTTTATTTCAAGTCATTACCAGTCAATGTATATATTGTATTTTATTTACCACAGGTTAGTATCTGTGAATGGTCTGCAGTGAAAGAGATATTCAACACTCTATTACCAGTTGGTATTGAAATTCTGCAAAAGCATTTTTCATCCGACAATCAATGGGACAATAAGTTATTGTGTGAAAAACTCAAGGAGATGTGTATTACTGCAGTTTGCAATAGTGAACGTGCTAAGACAGACCAAATGTATACTTGAGCTGCAATCAAACTGCCTTTTTTGTTTTTTTTAAACATGATTTTTTTATATTGTAGTGAGTACTTTATATTAAATGTCAATAAAAAGTAGAAGCATCTAAAAAAAGTTAA]
[-] EMBL CD075104             [                                                                                                                                                                                                                                                                                                                                                                                        TTGTAATTACTTTCAACGTGTTNTTTGTCGTAATGAGAATTTCGATAAGGATAAAATTACTATAAAAGATATTAATGTACTATGTAGTCGTCCAGTGACTCAGTATTCTTCGAAATTGAAAACACCTCCCCCCTTTTATTAAATGTATACCAACTGATTCTGGATTAAGTAGTCGATTTCCAAAGCTGGAAGAACCGACAATTTTGACAGGTTTACCGGCTGAAGCGCTGAATTGGTTTTATTTCAAGTCATTACCAGTCAATGTATATATTGTATTTTATTTACCACAGGTTAGTATCTGTGAATGGTCTGCAGTGAAAGAGATATTCAACACTCTATTACCAGTTGGTATTGAAATTTTGCAAAAGCATTTTTCATCCGACAATCAATGGGACAATAAGTTATTGTGTGAAAAACTCAAGGAGATGTGTATTACTGCAGTTTGCAATAGTGAACGTGCTAAGACAGACCAAATGTATACTTGAGCTGCAATCAAACTGCCTTTTTTGTTTTTTTTAAACATGATTTTTTTATATTGTATTGAGTACTTTATATTAATTGTCAATAAAAAGTAG                    ]
[-] EMBL BG932456             [                                                                                                                                                                                                                                                                                                                                                                                                       agGTGTTTTTTGTCGTAATGAGAATTTCGATAAGGATAAAATTACTATAAAAGATATCAATGTACTATGTAGTCGTCCAGTGACTCAGTATTCTTCGAAATTGAAAACACCT CCCCCTTTTATTAAATGTATACCAACTGATTCTGGATTAAGTAGTCGATTTCCAAAGCTGGAAGAACCGACAATTTTGACAGGTTTACCGGCTGAAGCGCTGAATTGGTTTTATTTCAAGTCATTACCAGTCAATGTATATATTGTATTTTATTTACCACAGGTTAGTATCTGTGAATG                                                                                                                                                                                                                                                                                                ]


>consensus_8950#0 CCTCCGAGGCCAGAATGCGGCACGAGGTCGACTCTGACAGTGATGATGACGACTCAATCG TTGATCAGAATGGTCGCGATGTTCTCGATAATTCCCCTCTATTCATAAATGAGCAAGATC AAGAATTAAACACCTATCAAATATTTCGAGATTATACAACAATATCACATGTAATTCTGG CTATTGGACCATTAACAAGTGCATTCGTAACCATTGGTACTGGTATTATCCATAAAAGTT TATCTATTATTAAAGTATCATATAAGAAAACTTCCCTAGTATTCAAAAGTTACTATCTTC CAGATTATGACAACACATTGATTATTTTTATTGAACATGAACCTAAATATTTGTGCTATG AACACAAGCATATCCTTTGTAATTACTTTCAACGTGTTTTTTGTCGTAATGAGAATTTCG ATAAGGATAAAATTACTATAAAAGATATTAATGTACTATGTAGTCGTCCAGTGACTCAGT ATTCTTCGAAATTGAAAACACCTCCCCCTTTTATTAAATGTATACCAACTGATTCTGGAT TAAGTAGTCGATTTCCAAAGCTGGAAGAACCGACAATTTTGACAGGTTTACCGGCTGAAG CGCTGAATTGGTTTTATTTCAAGTCATTACCAGTCAATGTATATATTGTATTTTATTTAC CACAGGTTAGTATCTGTGAATGGTCTGCAGTGAAAGAGATATTCAACACTCTATTACCAG TTGGTATTGAAATTCTGCAAAAGCATTTTTCATCCGACAATCAATGGGACAATAAGTTAT TGTGTGAAAAACTCAAGGAGATGTGTATTACTGCAGTTTGCAATAGTGAACGTGCTAAGA CAGACCAAATGTATACTTGAGCTGCAATCAAACTGCCTTTTTTGTTTTTTTTAAACATGA TTTTTTTATATTGTATTGAGTACTTTATATTAANTGTCAATAAAAAGTAGAAGCATCTAA AAAAAGTTAA



consensusID : consensus_8950#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 781
fasta sequence
                              [GTCTCGTTAAGGACATGTAAGCATTGGGGCGGGTGCTCGTTACCATTTCAGCTTAAGTTCATCTGTTTCCTGCTAAATTAATAGATTGGAACTACTACTATTATTCTGAATCAATCTGCCAAATACCTTAGGAATATCTTTCTGAAAATACATGGAATATTTTCTTAAACGGATCCCTGCGTTCAGTCGTGCATTAGGTGATATCGACTCTGACAGTGATGATGACGACTCAATCGTTGATCAGAATGGTCGCGATGTTCTCGATAATTCCCCTCTATTCATAAATGAGCAAGATCAAGAATTAAACACCTATCAAATATTTCGAGATTATACAACAATATCACATGTAATTCTGGCTATTGGACCATTAACAAGTGCATTCGTAACCATTGGTACTGGTATTATCCATAAAAGTTTATCTATTATTAAAGTATCATATAAGAAAACTTCCCTAGTATTCAAAAGTTACTATCTTCCAGATTATGACAACACATTGATTATTTTTATTGAACATGAACCTAAATATTTGTGCTATGAACACAAGCATATCCTTTGTAATTACTTTCAACGTGTTTTTTGTCGTAATGAGAATTTCGATAAGGATAAAATTACTATAAAAGATATTAATGTACTANTGTAGTCGTCCAGTGACTCAGTATTCTTCGAAATTGAAAACACCTCCCCCTTTTATTAAATGTATACCAACTGATTCTGGATTAAGTAGTCGATTTCCAAAGCTGGAAGAACCGANCATTTTGACAGGTTTACCGGCTGAGCGCTG]

[+] EMBL CD081275             [GTCTCGTTAAGGACATGTAAGCATTGGGGCGGGTGCTCGTTACCATTTCAGCTTAAGTTCATCTGTTTCCTGCTAAATTAATAGATTGGAACTACTACTATTATTCTGAATCAATCTGCCAAATACCTTAGGAATATCTTTCTGAAAATACATGGAATATTTTCTTAAACGGATCCCTGCGTTCAGTCGTGCATTAGGTGATATCGACTCTGACAGTGATGATGACGACTCAATCGTTGATCAGAATGGTCGCGATGTTCTCGATAATTCCCCTCTATTCATAAATGAGCAAGATCAAGAATTAAACACCTATCAAATATTTCGAGATTATACAACAATATCACATGTAATTCTGGCTATTGGACCATTAACAAGTGCATTCGTAACCATTGGTACTGGTATTATCCATAAAAGTTTATCTATTATTAAAGTATCATATAAGAAAACTTCCCTAGTATTCAAAAGTTACTATCTTCCAGATTATGACAAC                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD080091             [                                                                                      gGGAACTACTACTATTATTCTGAATCAATCTGCCAAATACCTTAGGAATATCTTTCTGAAAATACATGGAATATTTTCTTAAACGGATCCCTGCGTTCAGTCGTGCATTAGGTGATATCGACTCTGACAGTGATGATGACGACTCAATCGTTGATCAGAATGGTCGCTATGTTCTCGATAATTCCCCTCTATTCATAAATGAGCAAGATCAAGAATTAAACACCTATCAAATATTTCGAGATTATACAACAATATCACATGTAATTCTGGCTATTGGACCATTAACAAGTGCATTCGTAACCATTGGTACTGGTATTATCCATAAAAGTTTATCTATTATTAAAGTATCATATAAGAAAACTTCCCTAGTATTCAAAAGTTACTATCTTCCAGATTATGACAACACATTGATTATTTTTATTGAACATGAACCTAAATATTTGTGCTATGAACACAAGCATATCCTTTGTAATTACTTTCAACGTGTTTTTTGTCGTAATGAGAATTTCGATAAGGATAAAATTACTATAAAAGATATTAATGTACTANTGTAGTCGTCCAGTGACTCAGTATTCTTCGAAATTGAAAACACCTCCCCCTTTTATTAAATGTATACCAACTGATTCTGGATTAAGTAGTCGATTTCCAAAGCTGGAAGAACCGANCATTTTGACAGGTTTACCGGCTGAGCGCTG]
[-] EMBL CD116888             [                                                                                                                                                                                                                 CTGACAGTGATGATGACGACTCAATCGTTGATCAGAATGGTCGCGATGTTCTCGATAATTCCCCTCTATTCATAAATGAGCAAGATCAAGAATTAAACACCTATCAAATATTTCGAGATTATACAACAATATCACATGTAATTCTGGCTATTGGACCATTACCAAGTGCATTCGTAACCATTGGTACTGGTATTATCCATAAAAGTTTATCTATTATTAAAGTATCATATAAGAAAACTTCCCTAGTATTCAAAAGTTACTATCTTCCAGATTATGACAACACATTGATTATTTTTAT                                                                                                                                                                                                                                                                                  ]
[-] EMBL CD116958             [                                                                                                                                                                                                                 CTGACAGTGATGATGACGACTCAATCGTTGATCAGAATGGTCGCGATGTTCTCGATAATTCCCCTCTATTCATAAATGAGCAAGATCAAGAATTAAACACCTATCAAATATTTCGAGATTATACAACAATATCACATGTAATTCTGGCTATTGGACCATTAACAAGTGCATTCGTAACCATTGGTACTGGTATTATCCATAAAAGTTTATCTATTATTAAAGTATCATATAAGAAAACTTCCCTAGTATTCAAAAGTTACTATCTTCCAGATTATGACAACACATTGATTATTTTTAT                                                                                                                                                                                                                                                                                  ]


>consensus_8950#1 GTCTCGTTAAGGACATGTAAGCATTGGGGCGGGTGCTCGTTACCATTTCAGCTTAAGTTC ATCTGTTTCCTGCTAAATTAATAGATTGGAACTACTACTATTATTCTGAATCAATCTGCC AAATACCTTAGGAATATCTTTCTGAAAATACATGGAATATTTTCTTAAACGGATCCCTGC GTTCAGTCGTGCATTAGGTGATATCGACTCTGACAGTGATGATGACGACTCAATCGTTGA TCAGAATGGTCGCGATGTTCTCGATAATTCCCCTCTATTCATAAATGAGCAAGATCAAGA ATTAAACACCTATCAAATATTTCGAGATTATACAACAATATCACATGTAATTCTGGCTAT TGGACCATTAACAAGTGCATTCGTAACCATTGGTACTGGTATTATCCATAAAAGTTTATC TATTATTAAAGTATCATATAAGAAAACTTCCCTAGTATTCAAAAGTTACTATCTTCCAGA TTATGACAACACATTGATTATTTTTATTGAACATGAACCTAAATATTTGTGCTATGAACA CAAGCATATCCTTTGTAATTACTTTCAACGTGTTTTTTGTCGTAATGAGAATTTCGATAA GGATAAAATTACTATAAAAGATATTAATGTACTANTGTAGTCGTCCAGTGACTCAGTATT CTTCGAAATTGAAAACACCTCCCCCTTTTATTAAATGTATACCAACTGATTCTGGATTAA GTAGTCGATTTCCAAAGCTGGAAGAACCGANCATTTTGACAGGTTTACCGGCTGAGCGCT G



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8950#0      ------------------------------------------------------------
consensus_8950#1      GTCTCGTTAAGGACATGTAAGCATTGGGGCGGGTGCTCGTTACCATTTCAGCTTAAGTTC 60
                                                                                  

consensus_8950#0      ------------------------------------------------------------
consensus_8950#1      ATCTGTTTCCTGCTAAATTAATAGATTGGAACTACTACTATTATTCTGAATCAATCTGCC 120
                                                                                  

consensus_8950#0      -----------------------------------------------------CCTCCGA 7
consensus_8950#1      AAATACCTTAGGAATATCTTTCTGAAAATACATGGAATATTTTCTTAAACGGATCCCTGC 180
                                                                            * * * 

consensus_8950#0      GGCCAGA-ATGCGGCA--CGAGGTCGACTCTGACAGTGATGATGACGACTCAATCGTTGA 64
consensus_8950#1      GTTCAGTCGTGCATTAGGTGATATCGACTCTGACAGTGATGATGACGACTCAATCGTTGA 240
                      *  ***   ***   *   **  *************************************

consensus_8950#0      TCAGAATGGTCGCGATGTTCTCGATAATTCCCCTCTATTCATAAATGAGCAAGATCAAGA 124
consensus_8950#1      TCAGAATGGTCGCGATGTTCTCGATAATTCCCCTCTATTCATAAATGAGCAAGATCAAGA 300
                      ************************************************************

consensus_8950#0      ATTAAACACCTATCAAATATTTCGAGATTATACAACAATATCACATGTAATTCTGGCTAT 184
consensus_8950#1      ATTAAACACCTATCAAATATTTCGAGATTATACAACAATATCACATGTAATTCTGGCTAT 360
                      ************************************************************

consensus_8950#0      TGGACCATTAACAAGTGCATTCGTAACCATTGGTACTGGTATTATCCATAAAAGTTTATC 244
consensus_8950#1      TGGACCATTAACAAGTGCATTCGTAACCATTGGTACTGGTATTATCCATAAAAGTTTATC 420
                      ************************************************************

consensus_8950#0      TATTATTAAAGTATCATATAAGAAAACTTCCCTAGTATTCAAAAGTTACTATCTTCCAGA 304
consensus_8950#1      TATTATTAAAGTATCATATAAGAAAACTTCCCTAGTATTCAAAAGTTACTATCTTCCAGA 480
                      ************************************************************

consensus_8950#0      TTATGACAACACATTGATTATTTTTATTGAACATGAACCTAAATATTTGTGCTATGAACA 364
consensus_8950#1      TTATGACAACACATTGATTATTTTTATTGAACATGAACCTAAATATTTGTGCTATGAACA 540
                      ************************************************************

consensus_8950#0      CAAGCATATCCTTTGTAATTACTTTCAACGTGTTTTTTGTCGTAATGAGAATTTCGATAA 424
consensus_8950#1      CAAGCATATCCTTTGTAATTACTTTCAACGTGTTTTTTGTCGTAATGAGAATTTCGATAA 600
                      ************************************************************

consensus_8950#0      GGATAAAATTACTATAAAAGATATTAATGTACTAT-GTAGTCGTCCAGTGACTCAGTATT 483
consensus_8950#1      GGATAAAATTACTATAAAAGATATTAATGTACTANTGTAGTCGTCCAGTGACTCAGTATT 660
                      **********************************  ************************

consensus_8950#0      CTTCGAAATTGAAAACACCTCCCCCTTTTATTAAATGTATACCAACTGATTCTGGATTAA 543
consensus_8950#1      CTTCGAAATTGAAAACACCTCCCCCTTTTATTAAATGTATACCAACTGATTCTGGATTAA 720
                      ************************************************************

consensus_8950#0      GTAGTCGATTTCCAAAGCTGGAAGAACCGACAATTTTGACAGGTTTACCGGCTGAAGCGC 603
consensus_8950#1      GTAGTCGATTTCCAAAGCTGGAAGAACCGANCATTTTGACAGGTTTACCGGCTGA-GCGC 779
                      ******************************  *********************** ****

consensus_8950#0      TGAATTGGTTTTATTTCAAGTCATTACCAGTCAATGTATATATTGTATTTTATTTACCAC 663
consensus_8950#1      TG---------------------------------------------------------- 781
                      **                                                          

consensus_8950#0      AGGTTAGTATCTGTGAATGGTCTGCAGTGAAAGAGATATTCAACACTCTATTACCAGTTG 723
consensus_8950#1      ------------------------------------------------------------
                                                                                  

consensus_8950#0      GTATTGAAATTCTGCAAAAGCATTTTTCATCCGACAATCAATGGGACAATAAGTTATTGT 783
consensus_8950#1      ------------------------------------------------------------
                                                                                  

consensus_8950#0      GTGAAAAACTCAAGGAGATGTGTATTACTGCAGTTTGCAATAGTGAACGTGCTAAGACAG 843
consensus_8950#1      ------------------------------------------------------------
                                                                                  

consensus_8950#0      ACCAAATGTATACTTGAGCTGCAATCAAACTGCCTTTTTTGTTTTTTTTAAACATGATTT 903
consensus_8950#1      ------------------------------------------------------------
                                                                                  

consensus_8950#0      TTTTATATTGTATTGAGTACTTTATATTAANTGTCAATAAAAAGTAGAAGCATCTAAAAA 963
consensus_8950#1      ------------------------------------------------------------
                                                                                  

consensus_8950#0      AAGTTAA 970
consensus_8950#1      -------
                             




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)