These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8950#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 970 fasta sequence [CCTCCGAGGCCAGAATGCGGCACGAGGTCGACTCTGACAGTGATGATGACGACTCAATCGTTGATCAGAATGGTCGCGATGTTCTCGATAATTCCCCTCTATTCATAAATGAGCAAGATCAAGAATTAAACACCTATCAAATATTTCGAGATTATACAACAATATCACATGTAATTCTGGCTATTGGACCATTAACAAGTGCATTCGTAACCATTGGTACTGGTATTATCCATAAAAGTTTATCTATTATTAAAGTATCATATAAGAAAACTTCCCTAGTATTCAAAAGTTACTATCTTCCAGATTATGACAACACATTGATTATTTTTATTGAACATGAACCTAAATATTTGTGCTATGAACACAAGCATATCCTTTGTAATTACTTTCAACGTGTTTTTTGTCGTAATGAGAATTTCGATAAGGATAAAATTACTATAAAAGATATTAATGTACTATGTAGTCGTCCAGTGACTCAGTATTCTTCGAAATTGAAAACACCT-CCCCCTTTTATTAAATGTATACCAACTGATTCTGGATTAAGTAGTCGATTTCCAAAGCTGGAAGAACCGACAATTTTGACAGGTTTACCGGCTGAAGCGCTGAATTGGTTTTATTTCAAGTCATTACCAGTCAATGTATATATTGTATTTTATTTACCACAGGTTAGTATCTGTGAATGGTCTGCAGTGAAAGAGATATTCAACACTCTATTACCAGTTGGTATTGAAATTCTGCAAAAGCATTTTTCATCCGACAATCAATGGGACAATAAGTTATTGTGTGAAAAACTCAAGGAGATGTGTATTACTGCAGTTTGCAATAGTGAACGTGCTAAGACAGACCAAATGTATACTTGAGCTGCAATCAAACTGCCTTTTTTGTTTTTTTTAAACATGATTTTTTTATATTGTATTGAGTACTTTATATTAANTGTCAATAAAAAGTAGAAGCATCTAAAAAAAGTTAA] [+] EMBL CD081336 [CCTCCGAGGCCAGAATGCGGCACGAGGTCGACTCTGACAGTGATGATGACGACTCAATCGTTGATCAGAATGGTCGCGATGTTCTCGATAATTCCCCTCTATTCATAAATGAGCAAGATCAAGAATTAAACACCTATCAAATATTTCGAGATTATACAACAATATCACATGTAATTCTGGCTATTGGACCATTAACAAGTGCATTCGTAACCATTGGTACTGGTATTATCCATAAAAGTTTATCTATTATTAAAGTATCATATAAGAAAACTTCCCTAGTATTCAAAAGTTACTATCTTCCAGATTATGACAACACATTGATTATTTTTATTGAACATGAACCTAAATATTTGTGCTATGAACACAAGCATATCCTTTGTAATTACTTTCAACGTGTTTTTTGTCGTAATGAGAATTTCGATAAGGATAAAATTACTATAAAAGATATTAATGTACTATGTAGTCGTCCAGTGACTCAGTATTCTTCGAAATTGAAAACACCT CCCCCTTTTATTAAATGTATACCAACTGATTCTGGATTAAGTAGTCGATTTCCAAAGCTGGAAGAACCGACAATTTTGACAGGTTTACCGGCTGAAGCGCTGAATTGGTTTTATTTCAAGTCATTACCAGTCAATGTATATATTGTATTTTATTTACCACAGGTTAGTATCTGTGAATGGTCTGCAGTGAAAGAGATATTCAACACTCTATTACCAGTTGGTATTGAAATTCTGCANAAGCATTTTTCATCCGACAATCAATGGGANCAT AGTTATTGTGTG AAAACTCAAGGAGATGTGTATTACTGCAGTTTGGCATAGTGAACGTGCTAAGAC GACC AATGTATACTTGAGCTGC ATCCAACTGGCTTTTTTGTTTTTTT AACATGA TTTTTTA AATGGATTGAG ACTTNAT TTAANTG CCATAAAAg ] [-] EMBL CD075169 [ TTTTATTGAACATGAACCTAAATATTTGTGCTATGAACACAAGCATATCCTTTGTAATTACTTTCAACGTGTTTTTTGTCGTAATGAGAATTTCGATAAGGATAAAATTACTATAAAAGATATTAATGTACTATGTAGTCGTCCAGTGACTCAGTATTCTTCGAAATTGAAAACACCT CCCCCTTTTATTAAATGTATACCAACTGATTCTGGATTAAGTAGTCGATTTCCAAAGCTGGAAGAACCGACAATTTTGACAGGTTTACCGGCTGAAGCGCTGAATTGGTTTTATTTCAAGTCATTACCAGTCAATGTATATATTGTATTTTATTTACCACAGGTTAGTATCTGTGAATGGTCTGCAGTGAAAGAGATATTCAACACTCTATTACCAGTTGGTATTGAAATTCTGCAAAAGCATTTTTCATCCGACAATCAATGGGACAATAAGTTATTGTGTGAAAAACTCAAGGAGATGTGTATTACTGCAGTTTGCAATAGTGAACGTGCTAAGACAGACCAAATGTATACTTGAGCTGCAATCAAACTGCCTTTTTTGTTTTTTTTAAACATGATTTTTTTATATTGTAGTGAGTACTTTATATTAAATGTCAATAAAAAGTAGAAGCATCTAAAAAAAGTTAA] [-] EMBL CD075104 [ TTGTAATTACTTTCAACGTGTTNTTTGTCGTAATGAGAATTTCGATAAGGATAAAATTACTATAAAAGATATTAATGTACTATGTAGTCGTCCAGTGACTCAGTATTCTTCGAAATTGAAAACACCTCCCCCCTTTTATTAAATGTATACCAACTGATTCTGGATTAAGTAGTCGATTTCCAAAGCTGGAAGAACCGACAATTTTGACAGGTTTACCGGCTGAAGCGCTGAATTGGTTTTATTTCAAGTCATTACCAGTCAATGTATATATTGTATTTTATTTACCACAGGTTAGTATCTGTGAATGGTCTGCAGTGAAAGAGATATTCAACACTCTATTACCAGTTGGTATTGAAATTTTGCAAAAGCATTTTTCATCCGACAATCAATGGGACAATAAGTTATTGTGTGAAAAACTCAAGGAGATGTGTATTACTGCAGTTTGCAATAGTGAACGTGCTAAGACAGACCAAATGTATACTTGAGCTGCAATCAAACTGCCTTTTTTGTTTTTTTTAAACATGATTTTTTTATATTGTATTGAGTACTTTATATTAATTGTCAATAAAAAGTAG ] [-] EMBL BG932456 [ agGTGTTTTTTGTCGTAATGAGAATTTCGATAAGGATAAAATTACTATAAAAGATATCAATGTACTATGTAGTCGTCCAGTGACTCAGTATTCTTCGAAATTGAAAACACCT CCCCCTTTTATTAAATGTATACCAACTGATTCTGGATTAAGTAGTCGATTTCCAAAGCTGGAAGAACCGACAATTTTGACAGGTTTACCGGCTGAAGCGCTGAATTGGTTTTATTTCAAGTCATTACCAGTCAATGTATATATTGTATTTTATTTACCACAGGTTAGTATCTGTGAATG ] consensusID : consensus_8950#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 781 fasta sequence [GTCTCGTTAAGGACATGTAAGCATTGGGGCGGGTGCTCGTTACCATTTCAGCTTAAGTTCATCTGTTTCCTGCTAAATTAATAGATTGGAACTACTACTATTATTCTGAATCAATCTGCCAAATACCTTAGGAATATCTTTCTGAAAATACATGGAATATTTTCTTAAACGGATCCCTGCGTTCAGTCGTGCATTAGGTGATATCGACTCTGACAGTGATGATGACGACTCAATCGTTGATCAGAATGGTCGCGATGTTCTCGATAATTCCCCTCTATTCATAAATGAGCAAGATCAAGAATTAAACACCTATCAAATATTTCGAGATTATACAACAATATCACATGTAATTCTGGCTATTGGACCATTAACAAGTGCATTCGTAACCATTGGTACTGGTATTATCCATAAAAGTTTATCTATTATTAAAGTATCATATAAGAAAACTTCCCTAGTATTCAAAAGTTACTATCTTCCAGATTATGACAACACATTGATTATTTTTATTGAACATGAACCTAAATATTTGTGCTATGAACACAAGCATATCCTTTGTAATTACTTTCAACGTGTTTTTTGTCGTAATGAGAATTTCGATAAGGATAAAATTACTATAAAAGATATTAATGTACTANTGTAGTCGTCCAGTGACTCAGTATTCTTCGAAATTGAAAACACCTCCCCCTTTTATTAAATGTATACCAACTGATTCTGGATTAAGTAGTCGATTTCCAAAGCTGGAAGAACCGANCATTTTGACAGGTTTACCGGCTGAGCGCTG] [+] EMBL CD081275 [GTCTCGTTAAGGACATGTAAGCATTGGGGCGGGTGCTCGTTACCATTTCAGCTTAAGTTCATCTGTTTCCTGCTAAATTAATAGATTGGAACTACTACTATTATTCTGAATCAATCTGCCAAATACCTTAGGAATATCTTTCTGAAAATACATGGAATATTTTCTTAAACGGATCCCTGCGTTCAGTCGTGCATTAGGTGATATCGACTCTGACAGTGATGATGACGACTCAATCGTTGATCAGAATGGTCGCGATGTTCTCGATAATTCCCCTCTATTCATAAATGAGCAAGATCAAGAATTAAACACCTATCAAATATTTCGAGATTATACAACAATATCACATGTAATTCTGGCTATTGGACCATTAACAAGTGCATTCGTAACCATTGGTACTGGTATTATCCATAAAAGTTTATCTATTATTAAAGTATCATATAAGAAAACTTCCCTAGTATTCAAAAGTTACTATCTTCCAGATTATGACAAC ] [+] EMBL CD080091 [ gGGAACTACTACTATTATTCTGAATCAATCTGCCAAATACCTTAGGAATATCTTTCTGAAAATACATGGAATATTTTCTTAAACGGATCCCTGCGTTCAGTCGTGCATTAGGTGATATCGACTCTGACAGTGATGATGACGACTCAATCGTTGATCAGAATGGTCGCTATGTTCTCGATAATTCCCCTCTATTCATAAATGAGCAAGATCAAGAATTAAACACCTATCAAATATTTCGAGATTATACAACAATATCACATGTAATTCTGGCTATTGGACCATTAACAAGTGCATTCGTAACCATTGGTACTGGTATTATCCATAAAAGTTTATCTATTATTAAAGTATCATATAAGAAAACTTCCCTAGTATTCAAAAGTTACTATCTTCCAGATTATGACAACACATTGATTATTTTTATTGAACATGAACCTAAATATTTGTGCTATGAACACAAGCATATCCTTTGTAATTACTTTCAACGTGTTTTTTGTCGTAATGAGAATTTCGATAAGGATAAAATTACTATAAAAGATATTAATGTACTANTGTAGTCGTCCAGTGACTCAGTATTCTTCGAAATTGAAAACACCTCCCCCTTTTATTAAATGTATACCAACTGATTCTGGATTAAGTAGTCGATTTCCAAAGCTGGAAGAACCGANCATTTTGACAGGTTTACCGGCTGAGCGCTG] [-] EMBL CD116888 [ CTGACAGTGATGATGACGACTCAATCGTTGATCAGAATGGTCGCGATGTTCTCGATAATTCCCCTCTATTCATAAATGAGCAAGATCAAGAATTAAACACCTATCAAATATTTCGAGATTATACAACAATATCACATGTAATTCTGGCTATTGGACCATTACCAAGTGCATTCGTAACCATTGGTACTGGTATTATCCATAAAAGTTTATCTATTATTAAAGTATCATATAAGAAAACTTCCCTAGTATTCAAAAGTTACTATCTTCCAGATTATGACAACACATTGATTATTTTTAT ] [-] EMBL CD116958 [ CTGACAGTGATGATGACGACTCAATCGTTGATCAGAATGGTCGCGATGTTCTCGATAATTCCCCTCTATTCATAAATGAGCAAGATCAAGAATTAAACACCTATCAAATATTTCGAGATTATACAACAATATCACATGTAATTCTGGCTATTGGACCATTAACAAGTGCATTCGTAACCATTGGTACTGGTATTATCCATAAAAGTTTATCTATTATTAAAGTATCATATAAGAAAACTTCCCTAGTATTCAAAAGTTACTATCTTCCAGATTATGACAACACATTGATTATTTTTAT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8950#0 ------------------------------------------------------------ consensus_8950#1 GTCTCGTTAAGGACATGTAAGCATTGGGGCGGGTGCTCGTTACCATTTCAGCTTAAGTTC 60 consensus_8950#0 ------------------------------------------------------------ consensus_8950#1 ATCTGTTTCCTGCTAAATTAATAGATTGGAACTACTACTATTATTCTGAATCAATCTGCC 120 consensus_8950#0 -----------------------------------------------------CCTCCGA 7 consensus_8950#1 AAATACCTTAGGAATATCTTTCTGAAAATACATGGAATATTTTCTTAAACGGATCCCTGC 180 * * * consensus_8950#0 GGCCAGA-ATGCGGCA--CGAGGTCGACTCTGACAGTGATGATGACGACTCAATCGTTGA 64 consensus_8950#1 GTTCAGTCGTGCATTAGGTGATATCGACTCTGACAGTGATGATGACGACTCAATCGTTGA 240 * *** *** * ** ************************************* consensus_8950#0 TCAGAATGGTCGCGATGTTCTCGATAATTCCCCTCTATTCATAAATGAGCAAGATCAAGA 124 consensus_8950#1 TCAGAATGGTCGCGATGTTCTCGATAATTCCCCTCTATTCATAAATGAGCAAGATCAAGA 300 ************************************************************ consensus_8950#0 ATTAAACACCTATCAAATATTTCGAGATTATACAACAATATCACATGTAATTCTGGCTAT 184 consensus_8950#1 ATTAAACACCTATCAAATATTTCGAGATTATACAACAATATCACATGTAATTCTGGCTAT 360 ************************************************************ consensus_8950#0 TGGACCATTAACAAGTGCATTCGTAACCATTGGTACTGGTATTATCCATAAAAGTTTATC 244 consensus_8950#1 TGGACCATTAACAAGTGCATTCGTAACCATTGGTACTGGTATTATCCATAAAAGTTTATC 420 ************************************************************ consensus_8950#0 TATTATTAAAGTATCATATAAGAAAACTTCCCTAGTATTCAAAAGTTACTATCTTCCAGA 304 consensus_8950#1 TATTATTAAAGTATCATATAAGAAAACTTCCCTAGTATTCAAAAGTTACTATCTTCCAGA 480 ************************************************************ consensus_8950#0 TTATGACAACACATTGATTATTTTTATTGAACATGAACCTAAATATTTGTGCTATGAACA 364 consensus_8950#1 TTATGACAACACATTGATTATTTTTATTGAACATGAACCTAAATATTTGTGCTATGAACA 540 ************************************************************ consensus_8950#0 CAAGCATATCCTTTGTAATTACTTTCAACGTGTTTTTTGTCGTAATGAGAATTTCGATAA 424 consensus_8950#1 CAAGCATATCCTTTGTAATTACTTTCAACGTGTTTTTTGTCGTAATGAGAATTTCGATAA 600 ************************************************************ consensus_8950#0 GGATAAAATTACTATAAAAGATATTAATGTACTAT-GTAGTCGTCCAGTGACTCAGTATT 483 consensus_8950#1 GGATAAAATTACTATAAAAGATATTAATGTACTANTGTAGTCGTCCAGTGACTCAGTATT 660 ********************************** ************************ consensus_8950#0 CTTCGAAATTGAAAACACCTCCCCCTTTTATTAAATGTATACCAACTGATTCTGGATTAA 543 consensus_8950#1 CTTCGAAATTGAAAACACCTCCCCCTTTTATTAAATGTATACCAACTGATTCTGGATTAA 720 ************************************************************ consensus_8950#0 GTAGTCGATTTCCAAAGCTGGAAGAACCGACAATTTTGACAGGTTTACCGGCTGAAGCGC 603 consensus_8950#1 GTAGTCGATTTCCAAAGCTGGAAGAACCGANCATTTTGACAGGTTTACCGGCTGA-GCGC 779 ****************************** *********************** **** consensus_8950#0 TGAATTGGTTTTATTTCAAGTCATTACCAGTCAATGTATATATTGTATTTTATTTACCAC 663 consensus_8950#1 TG---------------------------------------------------------- 781 ** consensus_8950#0 AGGTTAGTATCTGTGAATGGTCTGCAGTGAAAGAGATATTCAACACTCTATTACCAGTTG 723 consensus_8950#1 ------------------------------------------------------------ consensus_8950#0 GTATTGAAATTCTGCAAAAGCATTTTTCATCCGACAATCAATGGGACAATAAGTTATTGT 783 consensus_8950#1 ------------------------------------------------------------ consensus_8950#0 GTGAAAAACTCAAGGAGATGTGTATTACTGCAGTTTGCAATAGTGAACGTGCTAAGACAG 843 consensus_8950#1 ------------------------------------------------------------ consensus_8950#0 ACCAAATGTATACTTGAGCTGCAATCAAACTGCCTTTTTTGTTTTTTTTAAACATGATTT 903 consensus_8950#1 ------------------------------------------------------------ consensus_8950#0 TTTTATATTGTATTGAGTACTTTATATTAANTGTCAATAAAAAGTAGAAGCATCTAAAAA 963 consensus_8950#1 ------------------------------------------------------------ consensus_8950#0 AAGTTAA 970 consensus_8950#1 ------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||