cluster # 8952

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 8952 cluster # 8952 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8952#0 length = 1183 sequences # 7

consensus_8952#1 length = 465 sequences # 1

consensusID : consensus_8952#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1183
fasta sequence

                              [ATGTACATAACTGTGTGTTGACTACATATTGTAGTAAAACCTACTTTGGAACTCCAAAACCCTTTCGTCATCTTAATTTATGTTCCAGATGAAACTTTGTGAGAAGCTGTGCTTTGTTGGAGCAATGGCTTTTCTTCTTACTACAATGTGTTTCGCCATCATCAGACCGGCGCTTGTGTTATACAGCTTTTCTTTTGTTTTCATC-CTGCTATACTTCCTGAGGGTTTACAACTACTGGAAGAATAAATACTTATTGTTCATGTTGGACCCATGCTACTTTACCAACTTTGCGTCGTTGATCTTTATCTGGTTAGTATCCGTACTAAAATTTGTATTTCACAGGTTATTGCCGCATTCACACGCCATGCAGTTGTTCCACTTCGGTCTTGCCAATTCGCTAGCCTTCGGTGGGGCGTTTTTGTTCCGTAACACCCTTGCTCTGCACGATATCCAAAGACTTACCTCCTGTCTTATACACATCTTGCCTGCTCTCTTCTCATTCCTAATTCGGTGGCATCCTTCGAAAACATCAGTTTGGTGGTATACCAACTTATATGATTCCCATGCTTCTCTAGAATTGTTGTCCTGGAATAAAGATATTGACTGGTTCTGGCTTGTTTCAGCTCCTACTTTATTCCATTTCATACGTGAGGTGTTATATTATACTATAACATATGGAATTGTAAAACCCAGTGATGAATATTTAGATAGTTTCCGATATTTACATAAAAAGAAGATTCTATGGCGTTTCCTTTGGAAATATATTGATGATCGATGGCATTTGATTAGTTGGATAGCCTGCAGTATCTTACTGTCTACAGTTCTCTTATTAGTTGCTGTCGTTGCATGGTGCAATTATCTATTCCATGCATCTATGTTAATTATCCAAACATTAACGTTAATATGGAATGGTGCATGTTTTTATTTAGACTTTTTCCCTATTGAATATACACGTAATTTACGAATAGAACCAGAGCAAGGCATGATTACTATAACTAAAAATGAAAATCACATTGATAAGAATAATGATAAAGAAATAATTGATGAACGTATAATAAACGATGATGTTTATAACAACATAGCTGCTAGTGTATTTTCATGTTATCCAACACCAGATGAATCAAATTCGAAAATTTATGAAGATGGCCATATGACAGTTGATGAACAAAAGGGATTAAAATAT]

[-] EMBL CD068458             [ATGTACATAACTGTGTGTTGACTACATATTGTAGTAAAACCTACTTTGGAACTCCAAAACCCTTTCGTCATCTTAATTTATGTTCCAGATGAAACTTTGTGAGAAGCTGTGCTTTGTTGGAGCAATGGCTTTTCTTCTTACTACAATGTGTTTCGCCATCATCAGACCGGCGCTTGTGTTATACAGCTTTTCTTTTGTTTTCATC CTGCTATACTTCCTGAGGGTTTACAACTACTGGAAGAATAAATACTTATTGTTCATGTTGGACCCATGCTACTTTACCAACTTTGCGTCGTTGATCTTTATCTGGTTAGTATCCGTACTAAAATTTGTATTTCACAGGTTATTGCCGCATTCACACGCCATGCAGTTGTTCCACTTCGGTCTTGCCAATTCGCTAGCCTTCGGTGGGGCGTTTTTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CD069036             [                                                                                              CTTTGTAAGAAGCTGTGCTTTGTTGGAGCAATGGCTTTTCTTCTTACTACAATGTGTTTCGCCATCGTCAGACCGGCGCTTGTGTTATACAGCTTTTCTTTTGTTTTC TCTGTGCTggccatcc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD183916             [                                                                                                                                                                                                                                                                                                                                                                                        CCACTTCGGTCTTGCCAATTCGCTAGCCTTCGGTGGGGCGTTTTTGTTCCGTAACACCCTTGCTCTGCACGGTATCCAAAGACTTACCTCCTGTCTTATACACATCTTGCCTGCTCTCTTCTCATTCCTAATTCGGTGGCATCCTTCGAAAACATCAGTTTGGTGGTATACCAACCTATATGATTCCCATGCTTCTCTAGAATTGTTGTCCTGGAATAAAGATATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD183915             [                                                                                                                                                                                                                                                                                                                                                                                        CCACTTCGGTCTTGCCAATTCGCTAGCCTTCGGTGGGGCGTTTTTGTTCCGTAACACCCTTGCTCTGCACGATATCCAAAGACTTACCTCCTGTCTTATACACATCTTGCCTGCTCTCTTCTCATTCCTAATTCGGTGGCATCCTTCGAAAACATCAGTTTGGTGGTATACCAACTTATATGATTCCCATGCTTCTCTAGAATTGTTGTCCTGGAATAAAGATATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD081161             [                                                                                                                                                                                                                                                                                                                                                                                                                                            cgaACCCCTGCTC GCAC ATATCC AAGACTTACCTCCTGTCTTATACATATCTTGCCTGCTCTCTTCTCATTCCTAATTCGGTGGCATCCTTCGAAAACATCAGTTTGGTGGTATACTAACTTATATGATTCCCATGCTTCTCTAGAATTGTTGTCCTGGAATAAAGATATTGACTGGTTCTGGCTTGTTTCAGCTCCTACTTTATTCCATTTCATACGTGAGGTGTTATATTATACTATAACATATGGAATTGTAAAACCCAGTGATGAATATTTAGATAGTTTCCGATATTTACATAAAAAGAAGATTCTATGGCGTTTCCTTTGGAAATATATTGATGATCGATGGCATTTGATTAGTTGGATAGCCTGCAGTATCTTACTGTCTACAGTTCTCTTATTAGTTGCTGTCGTTGCATGGTGCAATTATCTATTCCATGCATCTATGTTAATTATCCAAACATTAACGTTAATATGGAATGGTGCATGTTTTTATTTAGACTTTTTCCCTATTGAATATACACGTAATTTACGAATAGAACCAGAGCAAGGCATGATTACTATAACTAAAAATGAAAATCACATTGATAAGAATAATGATAAAGAAATAATTGATGAACGTATAATAAACGATGATGTTTATAACAACATAGCTGCTAGTGTATTTTCATGTTATCCAACACCAGATGAATCAAATTCGAAAATTTATGAAGATGGCCATATGACAGTTGATGAACAAAAGGGATTAAAATAT]
[-] EMBL CD166570             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TACGTGAGGTGTTATATTATACTATAACATATGGAATTGTAAAACCCAGTGATGAATATTTAGATAGTTTCCGATATTTACATAAAAAGAAGATTCTATGGCGTTTCCTTTGGAAATATATTGATGATCGATGGCATTTGATTAGTTGGATAGCCTGCAGTATCTTACTGTCTACAGTTCTCTTATTAGTTGCTGTCGTTCCTCGGTGCt                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CD200753             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ccataTGTTATATTATACTATAACATATGGAATTGTAAAACCCAGTGATGAATATTTAGATAGTTTCCGATATTTACATAAAAAGAAGATTCTATGGCGTTTCCTTTGGAAATATATTGATGATCGATGGCATTTGATTAGTTGGATAGCCTGCAGTATCTTACTGTCTACAGTTCTCTTATTAGTTGCTGTCGTTGCATGGTGCAATTATCTATTCCATGCATCTATGTTAATTATCCAAACATTAACGTTAATATGGAATGGTGCATGTTTTTATTTA                                                                                                                                                                                                                                                               ]




>consensus_8952#0
ATGTACATAACTGTGTGTTGACTACATATTGTAGTAAAACCTACTTTGGAACTCCAAAAC
CCTTTCGTCATCTTAATTTATGTTCCAGATGAAACTTTGTGAGAAGCTGTGCTTTGTTGG
AGCAATGGCTTTTCTTCTTACTACAATGTGTTTCGCCATCATCAGACCGGCGCTTGTGTT
ATACAGCTTTTCTTTTGTTTTCATCCTGCTATACTTCCTGAGGGTTTACAACTACTGGAA
GAATAAATACTTATTGTTCATGTTGGACCCATGCTACTTTACCAACTTTGCGTCGTTGAT
CTTTATCTGGTTAGTATCCGTACTAAAATTTGTATTTCACAGGTTATTGCCGCATTCACA
CGCCATGCAGTTGTTCCACTTCGGTCTTGCCAATTCGCTAGCCTTCGGTGGGGCGTTTTT
GTTCCGTAACACCCTTGCTCTGCACGATATCCAAAGACTTACCTCCTGTCTTATACACAT
CTTGCCTGCTCTCTTCTCATTCCTAATTCGGTGGCATCCTTCGAAAACATCAGTTTGGTG
GTATACCAACTTATATGATTCCCATGCTTCTCTAGAATTGTTGTCCTGGAATAAAGATAT
TGACTGGTTCTGGCTTGTTTCAGCTCCTACTTTATTCCATTTCATACGTGAGGTGTTATA
TTATACTATAACATATGGAATTGTAAAACCCAGTGATGAATATTTAGATAGTTTCCGATA
TTTACATAAAAAGAAGATTCTATGGCGTTTCCTTTGGAAATATATTGATGATCGATGGCA
TTTGATTAGTTGGATAGCCTGCAGTATCTTACTGTCTACAGTTCTCTTATTAGTTGCTGT
CGTTGCATGGTGCAATTATCTATTCCATGCATCTATGTTAATTATCCAAACATTAACGTT
AATATGGAATGGTGCATGTTTTTATTTAGACTTTTTCCCTATTGAATATACACGTAATTT
ACGAATAGAACCAGAGCAAGGCATGATTACTATAACTAAAAATGAAAATCACATTGATAA
GAATAATGATAAAGAAATAATTGATGAACGTATAATAAACGATGATGTTTATAACAACAT
AGCTGCTAGTGTATTTTCATGTTATCCAACACCAGATGAATCAAATTCGAAAATTTATGA
AGATGGCCATATGACAGTTGATGAACAAAAGGGATTAAAATAT

consensusID : consensus_8952#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 465
fasta sequence

                              [CAGTTTGTGGGTATACCAACTTATATGATTCCCATGCTTCTCTAGAATTGTTGTCCTGGAATAAAGATATTGACTGGTTCTGGCTTGTTTCAGCTCCTACTTTATTCCATTTCATACGTGAGGTGTTATATTATACTATAACATATGGAATTGTAAAACCCAGTGATGAATATTTAGATAGTTTCCGATATTTACATAAAAAGAAGATTCTATGGCGTTTCCTTTGGAAATATATTGATGATCGGACTACACAAACAATTTTGGTCACTACTCAGTGAACAATCAATTGCTCGTAACTCCTCAGTCTTATAGGAGGTGATCAGTCTCTATCCGAATAGCTCAATGGTGTAACGCCTCCCGTAACATGAAGCTGGGTGATGTGGGTTCGAATCCCACAGAAGGCGATATATCCATCAAGATCTCAGATGGCATTTGATTAGTTGGATAGCCTGCAGTATCTTACTG]

[-] EMBL CD196465             [CAGTTTGTGGGTATACCAACTTATATGATTCCCATGCTTCTCTAGAATTGTTGTCCTGGAATAAAGATATTGACTGGTTCTGGCTTGTTTCAGCTCCTACTTTATTCCATTTCATACGTGAGGTGTTATATTATACTATAACATATGGAATTGTAAAACCCAGTGATGAATATTTAGATAGTTTCCGATATTTACATAAAAAGAAGATTCTATGGCGTTTCCTTTGGAAATATATTGATGATCGGACTACACAAACAATTTTGGTCACTACTCAGTGAACAATCAATTGCTCGTAACTCCTCAGTCTTATAGGAGGTGATCAGTCTCTATCCGAATAGCTCAATGGTGTAACGCCTCCCGTAACATGAAGCTGGGTGATGTGGGTTCGAATCCCACAGAAGGCGATATATCCATCAAGATCTCAGATGGCATTTGATTAGTTGGATAGCCTGCAGTATCTTACTG]




>consensus_8952#1
CAGTTTGTGGGTATACCAACTTATATGATTCCCATGCTTCTCTAGAATTGTTGTCCTGGA
ATAAAGATATTGACTGGTTCTGGCTTGTTTCAGCTCCTACTTTATTCCATTTCATACGTG
AGGTGTTATATTATACTATAACATATGGAATTGTAAAACCCAGTGATGAATATTTAGATA
GTTTCCGATATTTACATAAAAAGAAGATTCTATGGCGTTTCCTTTGGAAATATATTGATG
ATCGGACTACACAAACAATTTTGGTCACTACTCAGTGAACAATCAATTGCTCGTAACTCC
TCAGTCTTATAGGAGGTGATCAGTCTCTATCCGAATAGCTCAATGGTGTAACGCCTCCCG
TAACATGAAGCTGGGTGATGTGGGTTCGAATCCCACAGAAGGCGATATATCCATCAAGAT
CTCAGATGGCATTTGATTAGTTGGATAGCCTGCAGTATCTTACTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8952#0      ATGTACATAACTGTGTGTTGACTACATATTGTAGTAAAACCTACTTTGGAACTCCAAAAC 60
consensus_8952#1      ------------------------------------------------------------
                                                                                  

consensus_8952#0      CCTTTCGTCATCTTAATTTATGTTCCAGATGAAACTTTGTGAGAAGCTGTGCTTTGTTGG 120
consensus_8952#1      ------------------------------------------------------------
                                                                                  

consensus_8952#0      AGCAATGGCTTTTCTTCTTACTACAATGTGTTTCGCCATCATCAGACCGGCGCTTGTGTT 180
consensus_8952#1      ------------------------------------------------------------
                                                                                  

consensus_8952#0      ATACAGCTTTTCTTTTGTTTTCATCCTGCTATACTTCCTGAGGGTTTACAACTACTGGAA 240
consensus_8952#1      ------------------------------------------------------------
                                                                                  

consensus_8952#0      GAATAAATACTTATTGTTCATGTTGGACCCATGCTACTTTACCAACTTTGCGTCGTTGAT 300
consensus_8952#1      ------------------------------------------------------------
                                                                                  

consensus_8952#0      CTTTATCTGGTTAGTATCCGTACTAAAATTTGTATTTCACAGGTTATTGCCGCATTCACA 360
consensus_8952#1      ------------------------------------------------------------
                                                                                  

consensus_8952#0      CGCCATGCAGTTGTTCCACTTCGGTCTTGCCAATTCGCTAGCCTTCGGTGGGGCGTTTTT 420
consensus_8952#1      ------------------------------------------------------------
                                                                                  

consensus_8952#0      GTTCCGTAACACCCTTGCTCTGCACGATATCCAAAGACTTACCTCCTGTCTTATACACAT 480
consensus_8952#1      ------------------------------------------------------------
                                                                                  

consensus_8952#0      CTTGCCTGCTCTCTTCTCATTCCTAATTCGGTGGCATCCTTCGAAAACATCAGTTTGGTG 540
consensus_8952#1      --------------------------------------------------CAGTTTGTGG 10
                                                                        *******  *

consensus_8952#0      GTATACCAACTTATATGATTCCCATGCTTCTCTAGAATTGTTGTCCTGGAATAAAGATAT 600
consensus_8952#1      GTATACCAACTTATATGATTCCCATGCTTCTCTAGAATTGTTGTCCTGGAATAAAGATAT 70
                      ************************************************************

consensus_8952#0      TGACTGGTTCTGGCTTGTTTCAGCTCCTACTTTATTCCATTTCATACGTGAGGTGTTATA 660
consensus_8952#1      TGACTGGTTCTGGCTTGTTTCAGCTCCTACTTTATTCCATTTCATACGTGAGGTGTTATA 130
                      ************************************************************

consensus_8952#0      TTATACTATAACATATGGAATTGTAAAACCCAGTGATGAATATTTAGATAGTTTCCGATA 720
consensus_8952#1      TTATACTATAACATATGGAATTGTAAAACCCAGTGATGAATATTTAGATAGTTTCCGATA 190
                      ************************************************************

consensus_8952#0      TTTACATAAAAAGAAGATTCTATGGCGTTTCCTTTGGAAATATATTGATGATCGATGGCA 780
consensus_8952#1      TTTACATAAAAAGAAGATTCTATGGCGTTTCCTTTGGAAATATATTGATGATCGG-ACTA 249
                      ******************************************************     *

consensus_8952#0      TTTGATTAGTTGGATAGCCTGCAGTATCTTACTGTCTACAGTTCTCTTATTAGTTGCTGT 840
consensus_8952#1      CACAAACAATTT--TGGTC---ACTACTCAGTGAACAATCAATTGCTCGTAACTCCTCAG 304
                          *  * **   * * *   * **         * *    *  **  * * *      

consensus_8952#0      CGTTGCATGGTGCAATTATCTATTCCATGCATCTATGTTAATTATCCAAACATTAACGTT 900
consensus_8952#1      TCTTATAGGAGGTGATCAGTC--TCTATCCGAATAGCTCAATGGTGTAA-CGCCTCCCGT 361
                        **  * *  *  ** *     ** ** *   **  * ***  *  ** *     *  *

consensus_8952#0      AATATGGAATGGTGCATGTTTTTATTTAGACTTTTTCCCTATTGAATATACACGTAATTT 960
consensus_8952#1      AACATGAAGC--TGGGTGATGTGGGTTCGAATCCCACAGAAGGCGATATATCCATCA--- 416
                      ** *** *    **  ** * *   ** ** *    *   *    *****  * * *   

consensus_8952#0      ACGAATAGAACCAGAGCAAGGCATGATTACTATAACTAAAAATGAAAATCACATTGATAA 1020
consensus_8952#1      ------AGATCTCAGATGGCATTTGATTAGT-TGGATAGCCTGCAGTATCTTACTG---- 465
                            *** *            ****** * *   **      *  ***  * **    

consensus_8952#0      GAATAATGATAAAGAAATAATTGATGAACGTATAATAAACGATGATGTTTATAACAACAT 1080
consensus_8952#1      ------------------------------------------------------------
                                                                                  

consensus_8952#0      AGCTGCTAGTGTATTTTCATGTTATCCAACACCAGATGAATCAAATTCGAAAATTTATGA 1140
consensus_8952#1      ------------------------------------------------------------
                                                                                  

consensus_8952#0      AGATGGCCATATGACAGTTGATGAACAAAAGGGATTAAAATAT 1183
consensus_8952#1      -------------------------------------------