cluster # 8953

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Schistosoma mansoni
cluster # 8953 cluster # 8953 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8953#0 length = 699 sequences # 5

consensus_8953#1 length = 468 sequences # 3

consensusID : consensus_8953#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 699
fasta sequence

                              [TGTTTTGAAAGATTTCCGCTTGGAGATACAACTGCTGTTACTATTGTTTCCTATCAGTATTCCTTCAAATCTCTGCTTTGTTTTCACTTTGTTTTTTGTGTATTCTCTACTGGTGAAGAGTGTGATTTTATAGGATGATATACTTACTATTCTCTCTTGGTAAACAGCGCCTATTATATACTTCTTCGTAGACTGCTATCTTGATTTTTCTGTTTTACTTACTTATTTTTTCTGGTTAGCGTTTTTTAGCGAGTTTGGTTTTCTACGGGATGAGGTCGACGATAACCCCATGTC-CAACCCTCCTCCTTTACCCGGGCTTGGGACCGACAGTAGCCCCCGGAAGACCTACAGGCGGAGTTTTTGGTTATATAATATCAGTATATTTTTTTCTTCTATGCTAACTCCCCTTTCTATTCTCTTTTTGTTGTCTACCACCATCCTTCATATACCATCAATGCTTGCTTTGCCCAATGATTTTTTTTATTGTCTATACGTGCATTATGATTTATTTTCCTCTCACTCGGTTCCATGCTTGTTTATTCATATGGTATATGTGAGTGTGAGTGTTCGAACTATAGCATAACTGGACTATAGCCTTTAGCAATTTGAAAATTCATTGGCCATATAAAAAACAATTTGTTACCCATGAAACGTCGATTGTGAATTAATCATTTTCTCACTACTACTAATCGTAGTAAA]

[-] EMBL CD156913             [TGTTTTGAAAGATTTCCGCTTGGAGATACAACTGCTGTTACTATTGTTTCCTATCAGTATTCCTTCAAATCTCTGCTTTGTTTTCACTTTGTTTTTTGTGTATTCTCTACTGGTGAAGAGTGTGATTTTATAGGATGATATACTTACTATTCTCTCTTGGTAAACAGCGCCTATTATATACTTCTTCGTAGACTGCTATCTTGATTTTCCTGTTTTACTTACTTATTTTTTCTGGTTAGCGTTTTTTAGCGAGTTTGGTTTTCTA                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL BG932364             [                       AGATACAACTGCTGTTACTATTGTTTCCTATCAGTATTCCTTCAAATCTCTGCTTTGTTTTCACTTTGTTTTTTGTGTATTCTCTACTGGTGAAGAGTGTGATTCTATAGGATGATATACTTACTATTCTCCCTTGGTAAACAGCGCCTATCATATACTTCTTCGTAGACTGCTATCTTGATTTTTCTGTTTTACTTACTTA TTTTTCTGGTTAGCGTTTTTTAGCGAGTTTGGTTTTCTACGGGATGAGGTCGACGATAACCCCATGTC CAACCCTC                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD164743             [                                  CTGTTACTATTGTTTCCTATCAGTATTCCTTCAAATCTCTGCTTTGTTTTCACTTTGTTTTTTGTGTATTCTCTACTGGTGAAGAGTGTGATTTTATAGGATGATATACTTACTATTCTCTCTTGGTAAACAGCGCCTATTATATACTTCTTCGTAGACTGCTATCTTGATTTTTCTGTTTTACTTACTTATTTTTTCTGGTTAGCGTTTTTTAGCGAGTTTGGTTTTCTACGGGATGAGGTCGACGATAACCCCATG                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CD182528             [                                   TGTTACTATTGTTTCCTATCAGTATTCCTTCAAATCTCTGCTTTGTTTTCACTTTGTTTTTTGTGTATTCTCTACTGGTGAAGAGTGTGATTTTATAGGATGATATACTTACTATTCTCTCTTGGTAAACAGCGCCTATTATATACTTCTTCGTAGACTGCTATCTTGATTTTTCTGTTTTACTTACTTATTTTTTCTGGTTAGCGTTTTTTAGCGAGTTTGGTTTTCTACGGGATGAGGTCGACGATAACCCCA                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD081216             [                                                TCCTAT AGTATTCCTTCAAATCTCTGCTTTGTTTTCACTTTGTTTTTTGTGTATTCTCTACCGGTGAAGAGTGTGATTTTATAGGATGATATACTTACTATTCTCTCTTGGTAAACAGCGCCTATCATATACTTCTTCGTAGACTGCTATCTTGATTTTTCTGTTTTACTTACTTATTTTTTCTGGTTAGCGTTTTTTAGCGAGTTTGGTTTTCTACGGGATGAGGTCGACGATAACCCCATGTCTCAACCCTCCTCCTTTACCCGGGCTTGGGACCGACAGTAGCCCCCGGAAGACCTACAGGCGGAGTTTTTGGTTATATAATATCAGTATATTTTTTTCTTCTATGCTAACTCCCCTTTCTATTCTCTTTTTGTTGTCTACCACCATCCTTCATATACCATCAATGCTTGCTTTGCCCAATGATTTTTTTTATTGTCTATACGTGCATTATGATTTATTTTCCTCTCACTCGGTTCCATGCTTGTTTATTCATATGGTATATGTGAGTGTGAGTGTTCGAACTATAGCATAACTGGACTATAGCCTTTAGCAATTTGAAAATTCATTGGCCATATAAAAAACAATTTGTTACCCATGAAACGTCGATTGTGAATTAATCATTTTCTCACTACTACTAATCGTAGTAAA]




>consensus_8953#0
TGTTTTGAAAGATTTCCGCTTGGAGATACAACTGCTGTTACTATTGTTTCCTATCAGTAT
TCCTTCAAATCTCTGCTTTGTTTTCACTTTGTTTTTTGTGTATTCTCTACTGGTGAAGAG
TGTGATTTTATAGGATGATATACTTACTATTCTCTCTTGGTAAACAGCGCCTATTATATA
CTTCTTCGTAGACTGCTATCTTGATTTTTCTGTTTTACTTACTTATTTTTTCTGGTTAGC
GTTTTTTAGCGAGTTTGGTTTTCTACGGGATGAGGTCGACGATAACCCCATGTCCAACCC
TCCTCCTTTACCCGGGCTTGGGACCGACAGTAGCCCCCGGAAGACCTACAGGCGGAGTTT
TTGGTTATATAATATCAGTATATTTTTTTCTTCTATGCTAACTCCCCTTTCTATTCTCTT
TTTGTTGTCTACCACCATCCTTCATATACCATCAATGCTTGCTTTGCCCAATGATTTTTT
TTATTGTCTATACGTGCATTATGATTTATTTTCCTCTCACTCGGTTCCATGCTTGTTTAT
TCATATGGTATATGTGAGTGTGAGTGTTCGAACTATAGCATAACTGGACTATAGCCTTTA
GCAATTTGAAAATTCATTGGCCATATAAAAAACAATTTGTTACCCATGAAACGTCGATTG
TGAATTAATCATTTTCTCACTACTACTAATCGTAGTAAA

consensusID : consensus_8953#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 468
fasta sequence

                              [GGTTGACCGTTAACCCCATGGCCAAACCCTCCTCTTTAACCCGGGGTTTGGGACCGACGGTAGCCCCCGGAAGACCTACAGGCGGAGTTTTTGGTTATATAATATCAGTATATTTTTTTCTTATATGCTAACTCCCCTTTCTATTCTCTTTTTGTTGTCTACCACCATCCTTCATATACAATCAATGCTTGCTTTGCCCAATGATTTTTTTTATTGTCTATACGTGCATTATGATTTATTTTTCTCTCACTTGTTTCCATGCTTGTTTATTCATATGGTATATGTGAGTGTGAGTGTTTGAACTATTGCATAGTGTCACTATAGCCTTATGTAATTTGAAAATTAATTGGTAATATAGAAAACAATTTGTAACCAATGAAATAAAAAAAAAAAAATAATCATTCTCATCACTACTACTAATAGTAGTAAATCAAGTACCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL AI394978             [GGTTGACCGTTAACCCCATGGCCAAACCCTCCTCTTTAACCCGGGGTTTGGGACCGACGGTAGCCCCCGGAAGACCTACAGGCGGAGTTTTTGGTTATATAATATCAGTATATTTTTTTCTTATATGCTAACTCCCCTTTCTATTCTCTTTTTGTTGTCTACCACCATCCTTCATATACAATCAATGCTTGCTTTGCCCAATGATTTTTTTTATTGTCTATACGTGCATTATGATTTATTTTTCTCTCACTTGTTTCCATGCTTGTTTATTCATATGGTATATGTGAGTGTGAGTGTTTGAACTATTGCATAGTGTCACTATAGCCTTATGTAATTTGAAAATTAATTGGTAATATAGAAAACAATTTGTAACCAATGAATTAAAAAA                                                                                ]
[-] EMBL AI395416             [                                               tgGGGACGGACAGTAGCCCCCGGAAGACCTACAGGCGGAGTTTTTGGTTATATAATATCAGTATATCTGTTTCTTGTATGCTAACTCCCCTTTCTATTCTCTGTGTGTTGTCTACCACCATCCTTCATATACAATCAATGCTTGCTTTGCCCAATGATTTTTTTTATTGTCTATACGTGCATTATGATTTATTTTTCTCTCACTTGTTTCCATGCTTGTTTATTCATATGGTATATGTGAGTGTGAGTGTTTGAACTATTGCATAGTGTCACTATAGCCTTATGTAATTTGAAAATTAATTGGTAATATAGAAAACAATTTGTAACCAATGAAAAAAAAAAAAAAAAA                                                                         ]
[-] EMBL AI394937             [                                                                                                                                                                tctcaCATCC TCATATCCAATCAATGCTTGCTTTGCCCAATGATTTTCTTTATTGTCTATACGTGCATTATGATTTATTTTTCTCTCACTTGTTACCATGCTTGTTTATTCATATGGTATATGTGAGTGTGAGTGTTTGAACTATTGCATAGTGTCACTATAGCCTTATGTAATTTGAAAATTAATTGGTAATATAGAAAACAATTTGTAACCAATGAAGTGTTGATGTTGAATTAATCATTCTCATCACTACTACTAATAGTAGTAAATCAAGTACCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_8953#1
GGTTGACCGTTAACCCCATGGCCAAACCCTCCTCTTTAACCCGGGGTTTGGGACCGACGG
TAGCCCCCGGAAGACCTACAGGCGGAGTTTTTGGTTATATAATATCAGTATATTTTTTTC
TTATATGCTAACTCCCCTTTCTATTCTCTTTTTGTTGTCTACCACCATCCTTCATATACA
ATCAATGCTTGCTTTGCCCAATGATTTTTTTTATTGTCTATACGTGCATTATGATTTATT
TTTCTCTCACTTGTTTCCATGCTTGTTTATTCATATGGTATATGTGAGTGTGAGTGTTTG
AACTATTGCATAGTGTCACTATAGCCTTATGTAATTTGAAAATTAATTGGTAATATAGAA
AACAATTTGTAACCAATGAAATAAAAAAAAAAAAATAATCATTCTCATCACTACTACTAA
TAGTAGTAAATCAAGTACCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8953#0      TGTTTTGAAAGATTTCCGCTTGGAGATACAACTGCTGTTACTATTGTTTCCTATCAGTAT 60
consensus_8953#1      ------------------------------------------------------------
                                                                                  

consensus_8953#0      TCCTTCAAATCTCTGCTTTGTTTTCACTTTGTTTTTTGTGTATTCTCTACTGGTGAAGAG 120
consensus_8953#1      ------------------------------------------------------------
                                                                                  

consensus_8953#0      TGTGATTTTATAGGATGATATACTTACTATTCTCTCTTGGTAAACAGCGCCTATTATATA 180
consensus_8953#1      ------------------------------------------------------------
                                                                                  

consensus_8953#0      CTTCTTCGTAGACTGCTATCTTGATTTTTCTGTTTTACTTACTTATTTTTTCTGGTTAGC 240
consensus_8953#1      ------------------------------------------------------------
                                                                                  

consensus_8953#0      GTTTTTTAGCGAGTTTGGTTTTCTACGGGATGAGGTCGAC-GATAACCCCATGTCCAA-C 298
consensus_8953#1      ---------------------------------GGTTGACCGTTAACCCCATGGCCAAAC 27
                                                       *** *** * ********** **** *

consensus_8953#0      CCTCCTCCTTTACCCGGG-CTTGGGACCGACAGTAGCCCCCGGAAGACCTACAGGCGGAG 357
consensus_8953#1      CCTCCTCTTTAACCCGGGGTTTGGGACCGACGGTAGCCCCCGGAAGACCTACAGGCGGAG 87
                      ******* ** *******  *********** ****************************

consensus_8953#0      TTTTTGGTTATATAATATCAGTATATTTTTTTCTTCTATGCTAACTCCCCTTTCTATTCT 417
consensus_8953#1      TTTTTGGTTATATAATATCAGTATATTTTTTTCTTATATGCTAACTCCCCTTTCTATTCT 147
                      *********************************** ************************

consensus_8953#0      CTTTTTGTTGTCTACCACCATCCTTCATATACCATCAATGCTTGCTTTGCCCAATGATTT 477
consensus_8953#1      CTTTTTGTTGTCTACCACCATCCTTCATATACAATCAATGCTTGCTTTGCCCAATGATTT 207
                      ******************************** ***************************

consensus_8953#0      TTTTTATTGTCTATACGTGCATTATGATTTATTTTCCTCTCACTCGGTTCCATGCTTGTT 537
consensus_8953#1      TTTTTATTGTCTATACGTGCATTATGATTTATTTTTCTCTCACTTGTTTCCATGCTTGTT 267
                      *********************************** ******** * *************

consensus_8953#0      TATTCATATGGTATATGTGAGTGTGAGTGTTCGAACTATAGCATAACTGGACTATAGCCT 597
consensus_8953#1      TATTCATATGGTATATGTGAGTGTGAGTGTTTGAACTATTGCATAGTGTCACTATAGCCT 327
                      ******************************* ******* *****     **********

consensus_8953#0      TTAGCAATTTGAAAATTCATTGGCCATATAAAAAACAATTTGTTACCCATGAAACGTCGA 657
consensus_8953#1      TATGTAATTTGAAAATTAATTGGTAATATAGAAAACAATTTGTAACCAATGAAATAAAAA 387
                      *  * ************ *****  ***** ************ *** ******     *

consensus_8953#0      TTGTGAATTAATCATTTTC-TCACTACTACTAATCGTAGTAAA----------------- 699
consensus_8953#1      AAAAAAAATAATCATTCTCATCACTACTACTAATAGTAGTAAATCAAGTACCCAAAAAAA 447
                           ** ******** ** ************** ********                 

consensus_8953#0      ---------------------
consensus_8953#1      AAAAAAAAAAAAAAAAAAAAA 468