These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8958#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 750 fasta sequence [CTCACTCGGTACGAGGCCTGAATAGTTTACGTAGTCAGTTAAGTATACGTACTAAAGAAACTCGAAAGGAGCTTCACAGGCTACACTCGCAGTTGACTATAAATAATAATCGATCAAAGAAGTTTATAGATTTTGAAAACAATTTACTTCAGTTACAAAATAAAATCAATTTATTAACACTACGCATCTCTGATTTAGAAAGGTTGAATGAAGAATCTAAGTCCACTTTTACATACATTAAAGATGAATTGAAAAAATGCTCAAGAGATGAAGAAATTAAGAAGGATTGCCATGATGCAGCTATTGAACAGATGAATTTTGCTATAACTAATCTCTCTCAGTCATTTTCAACTCAAATTAAAGAAATCGTCCAAGAGACTATAATCAATGAATTAAGGGACAGTGATAGTGTCCTTTTCACTTACTTTAGACAAACTGTATCTACGCTGGCAAAAGAATCCGTTGATAAATTAATTTACAATCGTCATTCGGAATTGGTTCCACACTCACTTGAAAACAAAGCAACTTTAGCTAAAATGATTGATGAAGCTCTTCATCTATTTGCAGCTGATAGAACCGGTCTTACAGATTATGCTTTAGAATCATCTGGAGGCTCTATTGTTGGCACA-CGTTGTACAAAAACATATACAGAA-GGCGCGTCATTATTTAGTATTTTTGGCTTGCCTTTAGCCCGTCTTAGCAATTCTCCTCGAACAATCCTCCAAACCTGGTAATAATCCTGGGGGACTG] [+] EMBL CD082236 [CTCACTCGGTACGAGGCCTGAATAGTTTACGTAGTCAGTTAAGTATACGTACTAAAGAAACTCGAAAGGAGCTTCACAGGCTACACTCGCAGTTGACTATAAATAATAATCGATCAAAGAAGTTTATAGATTTTGAAAACAATTTACTTCAGTTACAAAATAAAATCAATTTATTAACACTACGCATCTCTGATTTAGAAAGGTTGAATGAAGAATCTAAGTCCACTTTTACATACATTAAAGATGAATTGAAAAAATGCTCAAGAGATGAAGAAATTAAGAAGGATTGCCATGATGCAGCTATTGAACAGATGAATTTTGCTATAACTAATCTCTCTCAGTCATTTTCAACTCAAATTAAAGAAATCGTCCAAGAGACTATAATCAATGAATTAAGGGACAGTGATAGTGTCCTTTTCACTTACTTTAGACAAACTGTATCTACGCTGGCAAAAGAATCCGTTGATAAATTAATTTACAATCGTCATTCGGAATTGGTTCCACACTCACTTGAAAACAAAGCAACTTTAGCTAAAATGATTGATGAAGCTCTTCATCTATTTGCAGCTGATAGAACCGGTCTTACAGATTATGCTTTAGAATCATCTGGAGGCTCTATTGTTGGCACA CGTTGTACAAAAACATATACAGAA GGCGCGTCATTATTTAGTATTTTTGGCTT ] [+] EMBL BF936723 [ TCTGATTTAGAAAGGTTGAATGAAGAATCTAAGTCCACTTTTACATACATTAAAGATGAATTGAAAAAATGCTCAAGAGATGAAGAAATTAAGAAGGATTGCCATGATGCAGCTATTGAACAGATGAATTTTGCTATAACTAATCTCTCTCAGTCATTTTCAACTCAAATTAAAGAAATCGTCCAAGAGACTATAATCAATGAATTAAGGGACAGTGATAGTGTCCTTTTCACTTACTTTAGACAAACTGTATCTACGCTGGCAAAAGAATCCGTTGATAAATTAATTTACAATCGTCATTCGGAATTGGTTCCACACTCACTTGAAAACAAAGCAACTTTAGCTAAAATGATTGATGAAGCTCTTCATCTATTTGCAGCTGATAGAACCGGTCTTACAGATTATGCTTTAGAATCATCTGGAGGCTCTATTGTTGGCACACCGTTGTACAAAAACATATACAGAAGGGCGCGTCATTATTTAGTATTTTTGGCTTGCCTTTAGCCCGTCTTAGCAATTCTCCTCGAACAATCCTCCAAACCTGGTAATAATCCTGGGGGACTG] [+] EMBL CD077886 [ ATTAACCTACAATCGACATTCGGAATTGGTTCCACACTCACTTGAAAACAAAGCAACTTTAGCTAAAATGATTGATGAAGCTCTTCATCTATTTGCAGCTGATAGAACCGGTC TACAGATTATGCTTTAGAATCATCTGGA ] consensusID : consensus_8958#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 580 fasta sequence [TAAATATATTTAAACATAAAACATAAAAGCGATAAAATCAAATGGTTTAAAATGTTACAGAGCAAAACGTTTGATTAGGAGGATGACATGAGGGCACAATAATCATCTTGTTAAGAAAACAGTAATTGCAGTGTGTACAGAGCAGCATGAAGGGTGACGTGTTACGTATATGTATCTACAAAGTATTGCTGAACTCTGATCATGTAATCATATTGCCATGAACTCGAAAGCGATAAATACACGTATATTTGGGATGTCCGTGATTACTCAGTATGACAAGTTCGACAAATTGGACAGATTTTGAATATTCCTTTATAGGAAAATTTTGTATGGGTCTACTATTCACATCATAGGTAAATTCTCCCAAAACTACCCCATCATCATATTCTGTTTGAAGTGCCTTCACAAGAAAATCCCTCGGAGCTGAGTCCAGTCTACCATTTGGCGCGAGTTCCCTTGGTAAGTGTTCTAAAGTCACTGAACTGATAATAATTGGAGACGATAGACGAATGATAGCTTGACCCTTACTTCCGTGAAATGGCCAACAGTCCCCAGGATTATTACCAGGTTGGAGGATTGT] [+] EMBL CD075846 [TAAATATATTTAAACATAAAACATAAAAGCGATAAAATCAAATGGTTTAAAATGTTACAGAGCAAAACGTTTGATTAGGAGGATGACATGAGGGCACAATAATCATCTTGTTAAGAAAACAGTAATTGCAGTGTGTACAGAGCAGCATGAAGGGTGACGTGTTACGTATATGTATCTACAAAGTATTGCTGAACTCTGATCATGTAATCATATTGCCATGAACTCGAAAGCGATAAATACACGTATATTTGGGATGTCCGTGATTACTCAGTATGACAAGTTCGACAAATTGGACAGATTTTGAATATTCCTTTATAGGAAAATTTTGTATGGGTCTACTATTCACATCATAGGTAAATTCTCCCAAAACTACCCCATCATCATATTCTGTTTGAAGTGCCTTCACAAGAAAATCCCTCGGAGCTGAGTCCAGTCTACCATTTGGCGCGAGTTCCCTTGGTAAGTGTTCTAAAGTCACTGAACTGATAATAATTGGAGACGATAGACGAATGATAGCTTGACCCTTACTTCCGTGAAATGGCCAACAGTCCCCAGGATTATTACCAGGTTGGAGGATTGT] [-] EMBL BG930401 [ TCTACTATTCACATCATAGGTAAATTCTCCCAAAACTACCCCATCATCATATTCTGTTTGAAGTGCCTTCACAAGAAAATCCCTCGGAGCTGAGTCCAGTCTACCATTTGGCGCGAGTTCCCTTGGTAAGTGTTCTAAAGTCACTGAACTGATAATAATTGGAGACGATAGACGAATGATAGCTTGAC ] [+] EMBL BG931509 [ cTCTACTATTCACATCATAGGTAAATTCTCCCAAAACTACCCCATCATCATATTCTGTTTGAAGTGCCTTCACAAGAAAATCCCTCAGA ] consensusID : consensus_8958#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 486 fasta sequence [AATATAAGTATTCAAAATATGTCAATACTGTTGAATAGTTTACGTAGTCAGTTAAGTATACGTACTAAAGAAACTCGAAAGGAGCTTCACAGGCTACACTCGCAGTTGACTATAAATAATAATCGATCAAAGAAGTTTATAGATTTTGAAAACAATTTACTTCAGTTACAAAATAAAATCAATTTATTAACACTACGCATCTCTGATTTAGAAAGGTTGAATGAAGAATCTAAGTCCACTTTTACATACATTAAAGATGAATTGAAAAAATGCTCAAGAGATGAAGAAATTAAGAAGGATCGCCATGATGCAGCTATTGAACAGATGAATTTTGCTATAACTAATCTCTCTCAGTCATTTTCAACTCAAATTAAAGAAATCGTCCAAGAGACTATAATCAATGAATTAAGGGGCAGTGATAGTGTCCTTTTCACTTACTTTAGACAAACTGTATCTACGCTGGCAAAAGAATCCGTTGATAAATTA] [+] EMBL CD124749 [AATATAAGTATTCAAAATATGTCAATACTGTTGAATAGTTTACGTAGTCAGTTAAGTATACGTACTAAAGAAACTCGAAAGGAGCTTCACAGGCTACACTCGCAGTTGACTATAAATAATAATCGATCAAAGAAGTTTATAGATTTTGAAAACAATTTACTTCAGTTACAAAATAAAATCAATTTATTAACACTACGCATCTCTGATTTAGAAAGGTTGAATGAAGAATCTAAGTCCACTTTTACATACATTAAAGATGAATTGAAAAAATGCTCAAGAGATGAAGAAATTAAGAAGGATCGCCATGATGCAGCTATTGAACAGATGAATTTTGCTATAACTAATCTCTCTCAGTCATTTTCAACTCAAATTAAAGAAATCGTCCAAGAGACTATAATCAATGAATTAAGGGGCAGTGATAGTGTCCTTTTCACTTACTTTAGACAAACTGTATCTACGCTGGCAAAAGAATCCGTTGATAAATTA] consensusID : consensus_8958#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 298 fasta sequence [CGCAGCCAAGAATTCGGTCCGAGGCCAAGAGACTATAATCAATGAATTAAGGGACAGTGATAGTGTCCTTTTCACTTACTTTAGACAAACTGTATCTACGCTGGCAAAAGAATCCGTTGATAAATTAATTTACAATCGTCATTCGGAATTGGTTCCACACTCACTTGAAAACAAAGCAACTTTAGCTAAAATGATTGATGAAGCTCTTCATCTATTTGCAGCTGATAGAACCGGTCTTACAGATTATGCTNTAGAATCATCTGGAGGCTCTATNTTGTGCACACGTTGTACAAAAACA] [+] EMBL CD077998 [CGCAGCCAAGAATTCGGTCCGAGGCCAAGAGACTATAATCAATGAATTAAGGGACAGTGATAGTGTCCTTTTCACTTACTTTAGACAAACTGTATCTACGCTGGCAAAAGAATCCGTTGATAAATTAATTTACAATCGTCATTCGGAATTGGTTCCACACTCACTTGAAAACAAAGCAACTTTAGCTAAAATGATTGATGAAGCTCTTCATCTATTTGCAGCTGATAGAACCGGTCTTACAGATTATGCTNTAGAATCATCTGGAGGCTCTATNTTGTGCACACGTTGTACAAAAACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8958#0 -------------CTCACTCGGTACGAGGCCTGAATAGTTTACGTAGTCAGTTAAGTATA 47 consensus_8958#2 AATATAAGTATTCAAAATATGTCAATACTGTTGAATAGTTTACGTAGTCAGTTAAGTATA 60 consensus_8958#3 ------------------------------------------------------------ consensus_8958#1 ------------------------------------------------------------ consensus_8958#0 CGTACTAAAGAAACTCGAAAGGAGCTTCACAGGCTACACTCGCAGTTGACTATAAATAAT 107 consensus_8958#2 CGTACTAAAGAAACTCGAAAGGAGCTTCACAGGCTACACTCGCAGTTGACTATAAATAAT 120 consensus_8958#3 ------------------------------------------------------------ consensus_8958#1 ------------------------------TAAATATATTTAAACATAAAACATAAAAGC 30 consensus_8958#0 AATCGATCAAAGAAGTTTATAGATTTTGAAAACAATTTACTTCAGTTACAAAA---TAAA 164 consensus_8958#2 AATCGATCAAAGAAGTTTATAGATTTTGAAAACAATTTACTTCAGTTACAAAA---TAAA 177 consensus_8958#3 -----------------------CGCAGCCAAGAATTCGGTCCGAGGCCAAGAGACTATA 37 consensus_8958#1 GATAAAATCAAATGGTTTAAAATGTTACAGAGCAAAACGTTTGATTAGGAGGATGACATG 90 * ** * * * * consensus_8958#0 ATCAATTTATTAACACTACGCATCTCTGATTTAGAAAGGTTGAATGAAGA-ATCTAAGTC 223 consensus_8958#2 ATCAATTTATTAACACTACGCATCTCTGATTTAGAAAGGTTGAATGAAGA-ATCTAAGTC 236 consensus_8958#3 ATCAATGAATTAAGGGACAGTGATAGTGTCCTTTTCACTTACTTTAGACA-AACTGTATC 96 consensus_8958#1 AGGGCACAATAATCATCTTGTTA-AGAAAACAGTAATTGCAGTGTGTACAGAGCAGCATG 149 * ** * * * * * * * * consensus_8958#0 CACTTTTACATACATTAAAGATGAATTGAAAAAATGCTCAAGAGATGAAGAAATTAAGAA 283 consensus_8958#2 CACTTTTACATACATTAAAGATGAATTGAAAAAATGCTCAAGAGATGAAGAAATTAAGAA 296 consensus_8958#3 TACGCTGGCAAA-----AGAATCCGTTGATAAATTAATTTACAATCGTC---ATTCGGAA 148 consensus_8958#1 AAGGGTGACGTGTTACGTATATGTATCTACAAAGTATTGCTGAACTCTGATCATGTAATC 209 * * * ** * * *** * * * ** consensus_8958#0 GGATTGCCATGATGCAGCTATTGAACAGATGAATTTTGCTATAACTAATCTCTCTCAGTC 343 consensus_8958#2 GGATCGCCATGATGCAGCTATTGAACAGATGAATTTTGCTATAACTAATCTCTCTCAGTC 356 consensus_8958#3 TTGGTTCCACACTC--ACTTGAAAACAAAGCAACTTTAGCTAAAATGATTGATGAAGCTC 206 consensus_8958#1 ATATTGCCATGAACTCGAAAGCGATAAATACACGTATATTTGGGATGTCCGTGATTACTC 269 *** * * * * * * ** consensus_8958#0 ATTTT--CAACT--CAAATTAAAGAAATCGTCCAAGAGACTATAATCAATGAATTAAGGG 399 consensus_8958#2 ATTTT--CAACT--CAAATTAAAGAAATCGTCCAAGAGACTATAATCAATGAATTAAGGG 412 consensus_8958#3 TTCAT--CTATTTGCAGCTGATAGAACCGGTCTTACAGATTATGCTNTA-GAATCATCTG 263 consensus_8958#1 AGTATGACAAGTT-CGACAAATTGGACAGATTTTGAATATTCCTTTATAGGAAAATTTTG 328 * * * * * * * * * * * * * * *** * consensus_8958#0 ACAGTGATAGTGTCCTTTTCACTTACTTTAGACAAACTGTATCTACGCTGGCAAAAGAAT 459 consensus_8958#2 GCAGTGATAGTGTCCTTTTCACTTACTTTAGACAAACTGTATCTACGCTGGCAAAAGAAT 472 consensus_8958#3 GAGGCTCTA---TNTTGTGCACACGTTGTACAAAAACA---------------------- 298 consensus_8958#1 TATGGGTC----TACTATTCACATCATAGGTAAATTCTCCCAAAACTACCCCATCATCAT 384 * * * * *** * * * * consensus_8958#0 CCGTTGATAAATTAATTTACAATCGTCATTCGGAATTGGTTCCACACTCACTTGAAAACA 519 consensus_8958#2 CCGTTGATAAATTA---------------------------------------------- 486 consensus_8958#3 ------------------------------------------------------------ consensus_8958#1 ATTCTGTTTGAAGTGCCTTCACAAGAAAATCCCTCGGAGCTGAGTCCAGTCTACCATTTG 444 consensus_8958#0 AAGCAACTTTAGCTAAAATGATTGATGAAGCTCTTCATCTATTTGCAGCTGATAGAACCG 579 consensus_8958#2 ------------------------------------------------------------ consensus_8958#3 ------------------------------------------------------------ consensus_8958#1 GCGCGAGTTCCCTTGGTAAGTGTTCTAAAGTCACTGAACTGATAATAATTGGAGACGATA 504 consensus_8958#0 GTCTTACAGATTATGCTTTAGAATCATCTGGAGGCTCTATTGTTGGCACACGTTGTACAA 639 consensus_8958#2 ------------------------------------------------------------ consensus_8958#3 ------------------------------------------------------------ consensus_8958#1 GACGAATGATAGCTTGACCCTTACTTCCGTGAAATGGCCAACAGTCCCCAGGATTATTAC 564 consensus_8958#0 AAACATATACAGAAGGCGCGTCATTATTTAGTATTTTTGGCTTGCCTTTAGCCCGTCTTA 699 consensus_8958#2 ------------------------------------------------------------ consensus_8958#3 ------------------------------------------------------------ consensus_8958#1 CAGGTTGGAGGATTGT-------------------------------------------- 580 consensus_8958#0 GCAATTCTCCTCGAACAATCCTCCAAACCTGGTAATAATCCTGGGGGACTG 750 consensus_8958#2 --------------------------------------------------- consensus_8958#3 --------------------------------------------------- consensus_8958#1 --------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||