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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8967#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 747 fasta sequence
[CCACCAGGGATACATTTCACTTGTACTAGCCATAAAACTTGGTGTTTTAATATGCATGGATTTAAATCCGATATTACATCATCTTCAATTTTGCCAATCTGTTCGTGAACTATATGAAGCCAATGGGATAGTTCTGTTGTCACAGTGCTAGGATGTGATGCTAATGTACTGGAGGCTAGTGAAGAGGAAAAACTTCGACTATATTCTTTATAAATATCCACAACTTCAAGTAAACTTTGAACAGGTCGTGGTGATTGAACAATTTCTAAAATTTCAGGGAATTGTGATCGAACTAACAG-TTTGTCTGACCCTAATTCTTGCATATTCAATGCAAATGAAGTGGCTGGTGGAATGAAAATCAATAGTCGTCTAGTAAAATGATCAGTTTCAGTAATCCAAAACTGGTAAGAATCTTTAGACGTAGACATGTGACTATCTTCTTGTAGTTTAACAGCTGGAGGAATAAGAATCCTAATACCTGGCAAGGGAAGTAACGACGTTTGAGCAATTAATGATGAATTTTCTCCCTGTTCAATATTACCAGACACATGGGTTTTAACCAATTGTAAAATCATTCGTGTTTTAGGCATTAGTGTTAGAGAAATAGCATCATCATTCAACGACCATGTTGTAGGAGATTTTATAACACACTGCCATTGTGTAGAACTTGTATGAAATGGTGAGGATTGTGATCCAGGTTCTAGTTGAGTTGTAATATATCGTTGTAGTGAAAACTTAGCAGATTCT]
[-] EMBL CD093013 [CCACCAGGGATACATTTCACTTGTACTAGCCATAAAACTTGGTGTTTTAATATGCATGGATTTAAATCCGATATTACATCATCTTCAATTTTGCCAATCTGTTCGTGAACTATATGAAGCCAATGGGATAGTTCTGTTGTCACAGTGCTAGGATGTGATGCTAATGTACTGGAGGCTAGTGAAGAGGAAAAACTTCGACTATATTCTTTATAAATATCCACAACTTCAAGTAAACTTTGAACAGGTCGTGGTGATTGAACAATTTCTAAAATTTCAGGGAATTGTGATCGAACTAACAG TTTGTCTGACCCTAATTCTTGCATATTCAATGCAAATGAAGTGGCTGGTGGA ]
[-] EMBL CD092915 [ CACTTGTACTAGCCATAAAACTTGGTGTTTTAATATGGATGGATTTAAATCCGATATTACATCATCTTCAATTTTGCCAATCTGTTCGTGAACTATATGAAGCCAATGGGATAGTTCTGTTGTCACAGTGCTAGGATATGATGCTAATGTACTGGAGGCTAGTGAAGAGGAAAAACTTCGACTATATTCTTTATAAATATCCACAACTTCAAGTAAACTTTGAACAGGTCGTGGTGATTGAACAATTTCT AAATTTCAGGGAATTGTGATCGAACTAACAG TTTGTCTGACCCTAATTCTTGCATATTCAATGCAA ]
[+] EMBL CD167230 [ GTGG GATTGAACAATTTCTAAAATTTCA GGAA TGTGATCGAACTAACAGNTTTGTCTGACCCTAATTCTTGCATATTCAATGCAAATGAAGTGGCTGGTGGAATGAAAATCAATAGTCGTCTAGTAAAATGATCAGTTTCAGTAATCCAAAACTGGTAAGAATCTTTAGACGTAGACATGTGACTATCTTCTTGTAGTTTAACAGCTGGAGGAATAAGAATCCTAATACCTGGCAAGGGAAGTAACGACGTTTGAGCAATTAATGATGAATTTTCTCCCTGTTCAATATTACCAGACACATGGGTTTTAACCAATTGTAAAATCATTCGTGTTTTAGGCATTAGTGTTAGAGAAATAGCATCATCATTCAACGACCATGTTGTAGGAGATTTTATAACACACTGCCATTGTGTAGAACTTGTATGAAATGGTGAG ]
[+] EMBL CD160107 [ agAATCAATAGTCGTCTAGTATAATGATCAGTTTCAGTAATCCAAAACTGGTAAGAATCTTTAGACGTAGACATGTGACTATCTTCTTGTAGTTTAACAGCTGGAGGAATAAGAATCCTAATACCTGGCAAGGGAAGTAACGACGTTTGAGCAATTAATGATGAATTTTCTCCCTGTTCAATATTACCAGACACATGGGTTTTAACCAATTGTAAAATCATTCGTGTTTTAGGCATTAGTGTTAGAGAAATAGCATCAACATTCAACGACCATGTTGTAGGAGATTTTATTACACACTGCCATTGTGTAGAACTTGTATGAAATGGTGAGGATTGTGATCCAGGTTCTAGTTGAGTTGTAATATATCGTTGTAGTGAAAACTTAGCAGATTCT]
consensusID : consensus_8967#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 568 fasta sequence
[ATTGAATATGATGTAATATCGATATTTAAATCCATCCATATTAAAACACCAAGGTTTATGGATAGGACTACCGAGATGAATCCCTGGAAGATTCTACTATTGATACTCTAGCGAATGTTGAATTAAACCTTCGTTCACCATGTTCAACATATTGAAATCCCTGTACGAATTACTATTCCATCATTAAATCAATTAGATAACAAAGAAATAACAACTTCACAACCATCGTTCTACTTATTAAATTTCTCTT-GGATTCATCTTTTTGCTATGATTGTAATTACATTGTTTATTGCGATTATCATACACATTATATTTCGCAGTGAGACATTGATAAGTTCTTCAAATAATTCAAACATTGGAAAATATTCACCTGGTCCTCTACCTCCATTGGTCAAAGGAGGAATAAGTCGATCACCTCCTGGTCGACAATTATGGAGTCAAAATTTTATTCCTGGTGGAAGTCCTAATACAATACGTCAGCCATTTTCAACATTTGATGGTCTACGTTCATCGAATGTTTCGTCATCTCCAATCCATCCACAAAATCTTTCCTCAAACACGTCATATA]
[+] EMBL CD180852 [ATTGAATATGATGTAATATCGATATTTAAATCCATCCATATTAAAACACCAAGGTTTATGGATAGGACTACCGAGATGAATCCCTGGAAGATTCTACTATTGATACTCTAGCGAATGTTGAATTAAACCTTCGTTCACCATGTTCAACATATTGAAATCCCTGTACGAATTACTATTCCATCATTAAATCAATTAGATAACAAAGAAATAACAACTTCACAACCATCGTTCTACTTATTAAATTTGTCTTCGGATTCATCTTTTTGCTATGAATGAAATTACATTGATTATTGCGATTATCATACACATTATATTTCGCAGCGAGACATTGATAAATTCTTCATATAATTCAAACATTGGAAAATATTCACCTGGCCCTC ]
[-] EMBL CD191810 [ ATTAAATTTCTCTT GGATTCATCTTTTTGCTATGATTGTAATTACATTGTTTATTGCGATTATCATACACATTATATTTCGCAGTGAGACATTGATAAGTTCTTCAAATAATTCAAACATTGGAAAATATTCACCTGGTCCTCTACCTCCATTGGTCAAAGGAGGAATAAGTCGATCACCTCCTGGTCGACAATTATGGAGTCAAAATTTTATTCCTGGTGGAAGTCCTAATACAATACGTCAGCCATTTTCAACATTTGATGGTCTACGTTCATCGAATGTTTCGTCATCTCCAATCCATCCACAAAATCTTTCCTCAAACACGTCATATA]
[-] EMBL CD191921 [ ATTAAATTTCTCTT GGATTCATCTTTTTGCTATGATTGTAATTACATTGTTTATTGCGATTATCATACACATTATATTTCGCAGTGAGACATTGATAAGTTCTTCAAATAATTCAAACATTGGAAAATATTCACCTGGTCCTCTACCTCCATTGGTCAAAGGAGGAATAAGTCGATCACCTCCTGGTCGACAATTATGGAGTCAAAATTTTATTCCTGGTGGAAGTCCTAATACAATACGTCAGCCATTTTCAACATTTGATGGTCTACGTTCATCGAATGTTTCGTCATCTCCAATCCATCCACAAAATCTTTCCTCAAACACGTCATATA]
[-] EMBL CD134794 [ ATTAAATTTCTCTT GGATTCATCTTTTTGCTATGATTGTAATTACATTGTTTATTGCGATTATCATACACATTATATTACACAGTGAGACATTGATAAGTTCTTCAAATAATTCAAACATTGGAAAATATTCACCTGGTCCTCTACCTCCATTGGTCAAAGGAGGAATAAGTCGATCACCTCCTGGTCGACAATTATGGAGTCAAAATTTTATTCCTGGTGGAAGTCCTAATACAATACGTCAGCCATTTTCAACATTTGATGGTCTACGTTCATCGAATGTTTCGTCATCTCCAATCCATCCACAAAATCTTTCCTCAAACACGTCATATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8967#0 CCACCAGGGATACATTTCACTTGTACTAGCCATAAAACTTGGTGTTTTAATATGCATGGA 60
consensus_8967#1 -------------------------------ATTGAATATGATGT---AATATCGAT--A 24
** ** ** *** ***** ** *
consensus_8967#0 TTTAAATCCG---ATATTACATCATCTTCAATTTTGCCAATCTGTTCGTGAACTATATGA 117
consensus_8967#1 TTTAAATCCATCCATATTAAAACACCA--AGGTTTATGGATAGGACT---ACCGAGATGA 79
********* ****** * ** * * *** ** * * * * ****
consensus_8967#0 AGCCAATGGGATAGTTCTGTTGTCACAGTGCTAGGATGTGATGCTAATGTACTGGAGGCT 177
consensus_8967#1 ATCC--CTGGAAGATTCTACTATTGATACTCTAGCGAATGTTG--AATTAAACCTTCGTT 135
* ** *** **** * * **** ** ** *** * * *
consensus_8967#0 AGTGAAGAGGAAAAACTTCGACTATATTCTTTATAAATATCCACAACTTCAAGTAAACTT 237
consensus_8967#1 CACCATGTTCAACATATTGAAAT---CCCTGTACGAATTACTATTCCATCAT-TAAA--T 189
* * ** * ** * * ** ** *** * * * *** **** *
consensus_8967#0 TGAACAGGTCGTGGTGATTGAACAATTTCTAAAATTTCAGGGAATTGTGATCGAACTAAC 297
consensus_8967#1 CAATTAGATAACAAAGAAATAACAACTTCACAACCATCG-----TTCTACTT--ATTA-- 240
* ** * ** ***** *** ** ** ** * * * **
consensus_8967#0 AGTTTGTCTGACCCTAATTCTTGCATATTCAATGCAAATGAAGTGGCTGGTGGAATGAAA 357
consensus_8967#1 AATTTCTCTTGGATTCATCTTTTTGCTATGATTGTAATTACATTGTTTATTGCGATTATC 300
* *** *** * ** ** * * ** ** * * ** * ** ** *
consensus_8967#0 ATCAATAGT-CGTCTAGTAAAATGATCAGTTTCAGTAATCCAAAACTGGTAAGAATCTTT 416
consensus_8967#1 ATACACATTATATTTCGCAGTGAGACATTGATAAGTTCTTCAAA--TAATTCAAACATTG 358
** * * * * * * * ** * *** * **** * * ** **
consensus_8967#0 AGACGTAGACATGTGACTATCTTCTTGTAGTTTAACAGCTGGAGGAATAAGAATCCTAAT 476
consensus_8967#1 GAAAATATTCACCTGGTCCTCTACCTCCA--TTGGTCAAAGGAGGAATAAGTCGATCACC 416
* ** ** ** *** * * * ** *********** *
consensus_8967#0 ACCTGGCAAGGGAAGTAACGACGTTTGAGCAATTAATGATGAATTTTCTCCCTGTTCAAT 536
consensus_8967#1 TCCTGGT-----------CGACAATTATGGAGTCAA-----AATTTTATTCCTGGTGGAA 460
***** **** ** * * * ** ****** * **** * *
consensus_8967#0 ATTACCAGACACATGGGTTTTAACCAATTGTAAAATCATTCGTGTTTTAGGCATTAGTGT 596
consensus_8967#1 GT--CCTAATACA-ATACGTCAGCCATTTTCAACAT--TTGATGGTCTA--------CGT 507
* ** * *** * * *** ** ** ** ** ** * ** **
consensus_8967#0 TAGAGAAATAGCATCATCATTCAACGACCATGTTGTAGGAGATTTTATAACACACTGCCA 656
consensus_8967#1 TCATCGAAT-GTTTCGTCATCTCCAATCCAT-CCACAAAATCTTTCCTCAAACAC----G 561
* *** * ** **** **** * * *** * * ****
consensus_8967#0 TTGTGTAGAACTTGTATGAAATGGTGAGGATTGTGATCCAGGTTCTAGTTGAGTTGTAAT 716
consensus_8967#1 TCATATA----------------------------------------------------- 568
* * **
consensus_8967#0 ATATCGTTGTAGTGAAAACTTAGCAGATTCT 747
consensus_8967#1 -------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||