These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8968#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1460 fasta sequence [ACGAGGCCAAGAATTTGGCACGAGGCGCAGAGACGTTTTTTATTCTTCTCATCATTTAATGACAAAGATTCTCCAGTTCGTATTGCAGCTAATCCACCTATCGCTGTTCGACATCCTCATGCAGTATTTCAGTCTGCAAACTTATGTTTATCATCATCGGGTACAGTATGGAATTCTACTAGTGCTTCAGGATGCAATATTATCGACTCATCACCTTTGTCTGCTGCTGATTTTGTTTACGGACGGGAACAGCTAGTAACAGCATCGTGGGATCGTTTAGGTAGGACATATGATCTTGCAACTGGACAAGAGCTAGAGTCACTTACGGGACATGATGATCATTTGACAGATGTTCGTTGTGAACCAGGTGGATTTCCTGTTGTTGTCACATCGTCAAGGGATTGTACATTTCGTTTGTGGGATTTTCGTCAACCAGGAATGCGGGTTCATGTTCAACAGGCCCATAGTCAAACAGTTTCAACCACACAATTTTTGGCACCTGGTTCTCCTGAACGTCTTATAAGCGCTGGTGCTGATAGATTTTGTCGTATTTGGGACTTGAGACAAAGCCGTGGTCCAGTTGTTAGCATTAGAACCGATGCAGCAATCAATCGCTTGGGTTTGTCTGGTTATGGTTCAGGTATATCATATCAGCCAACAGAAACAACTAATCCTACTTCAACTGTAATTGGATCGTCTTCCAGTGAAGCTCCATCTCAGGCTGCTCAACACGGGTCTATGTTAAGTACTTCAGTCCATAGTCCTTGTTCTTCCAGTTACCCCAAGTATATTGCTCTACCGCTGGTCAATCGAGGAATAAAGATTCTTGATGTAAATGGCAACAGAATTGGTCGGTTAACTAGGTCGTCACATGGTCATTCTCGTATGGTAACTTGTGTTGCATGGGCGAATGAAGGTGTTCACAATTTCTTCTCATCTGGTTTTGATGGTCTCTTATTGGCTTGGCAAATTCGCATTGGAAATGTTTAGCACATAAATCCTTAAAATCTATTCTTTTACTGCAATAATTCGTTGACTTCAGTATTATGGCGGTTTTCTTTTTCGTGATATGATGTCATATGTGTATGGTTATACCTTTTACACTTTGTACATACACTTTACACATATGTAAGATACTAACTACCTATCTACTTATGTTTTCATATTGACACTGATTAATTTTCATTTTTTCAAAGTAATGATTTTCTCTTTATTTTGTTTTTTTCTCGTTACTATTTCGTTGTTAGTTGTGTAGAATATTTTCACTAGGAGTGATCAATTCAGGTTATTACTATTGTCTTTAATGATTATTCGATTAATATTCTTATTATTACTGTTACTACTATCTCTTTACTATTCATTTTGTTGTTATTTGTCTGCGAACAAACTGCCTTTTTATTTATTACTTATAACGGTGTAAATAAGTATTTATGGAAAGTTTTGCTAGTAAATCAGATTGT] [+] EMBL CD079698 [ACGAGGCCAAGAATTTGGCACGAGGCGCAGAGACGTTTTTTATTCTTCTCATCATTTAATGACAAAGATTCTCCAGTTCGTATTGCAGCTAATCCACCTATCGCTGTTCGACATCCTCATGCAGTATTTCAGTCTGCAAACTTATGTTTATCATCATCGGGTACAGTATGGAATTCTACTAGTGCTTCAGGATGCAATATTATCGACTCATCACCTTTGTCTGCTGCTGATTTTGTTTACGGACGGGAACAGCTAGTAACAGCATCGTGGGATCGTTTAGGTAGGACATATGATCTTGCAACTGGACAAGAGCTAGAGTCACTTACGGGACATGATGATCATTTGACAGATGTTCGTTGTGAACCAGGTGGATTTCCTGTTGTTGTCACATCGTCAAGGGATTGTACATTTCGTTTGTGGGATTTTCGTCAACCAGGAATGCGGGTTCATGTTCAACAGGCCCATAGTCAAACAGTTTCAACCACACAATTTTTGGCACCTGGTTCTCCTGAACGTCTTATAAGCGCTGGTGCTGATAGATTTTGTCGTATTTGGGACTTGAGACAAAGCCGTGGTCCAGTTGTTAGCATTAGAACCGATGCAGCAATCAATCGCTTGGGTTTGTCTGGTTATGGTTCAGGTATATCATATCAGCCAACAGAAACAACTAATCCTACTTCAACTGTAATTGGATCGTCTTCCAGTGAAG ] [+] EMBL CD082808 [ gTGATCATTTGACAGATGTTCGTTGTGAACCAGGTGGATTTCCTGTTGTTGTCACATCGTCAAGGGATTGTACATTTCGTTTGTGGGATTTTCGTCAACCAGGAATGCGGGTTCATGTTCAACAGGCCCATAGTCAAACAGTTTCAACCACACAATTTTTGGCACCTGGTTCTCCTGAACGTCTTATAAGCGCTGGTGCTGATAGATTTTGTCGTATTTGGGACTTGAGACAAAGCCGTGGTCCAGTTGTTAGCATTAGAACCGATGCAGCAATCAATCGCTTGGGTTTGTCTGGTTATGGTTCAGGTATATCATATCAGCCAACAGAAACAACTAATCCTACTTCAACTGTAATTGGATCGTCTTCCAGTGAAGCTCCATCTCAGGCTGCTCAACACGGGTCTATGTTAAGTACTTCAGTCCATAGTCCTTGTTCTTCCAGTTACCCCAAGTATATTGCTCTACCGCTGGTCAATCGAGGAATAAAGATTCTTGATGTAAATGGCAACAGAATTGGTCGGTTAACTAGGTCGTCACATGGTCATTCTCGTATGGTAACTTGTGTTGCATGGGCGAATGAAGGTGTTCACAATTTCTTCTCATCTGGTTNTGATGGTCTCTTATTGGC ] [-] EMBL CD143115 [ GGACTTGAGACAAAGCCGTGGTCCAGTTGTTAGCATTAGANCCGATGCAGCAATCAATCGCTTGGGTTTGTCTGGTTATGGTTCAGGTATATCATATCAGCCAACAGAAACAACTAATCCTACTTCAACTGTAATTGGATCGTCTTCCAGTGAAGCTCCATCTCAGGCTGCTCAACACGGGTCTATGTTAAGTACTTCAGTCCATAGTCCTTGTTCTTCCAGTTACCCCAAGTATATTGCTCTACCGCTGGTCAATCGAGGAATAAAGATTCTTGATGTAAATGGCAACAGAATTGGTCGGTTAACTAGGTCGTCACATGGTCATTCTCGTATGGTAACTTGTGTTGCATGGGCGAATGAAGGTGTTCACAATT ] [-] EMBL CD149994 [ AGACAAAGCCGTGGTCCAGTTGTTAGCATTAGAACCGATGCAGCAATCAATCGCTTGGGTTTGTCTGGTTATGGTTCAGGTATATCATATCAGCCAACAGAAACAACTAATCCTACTTCAACTGTAATTGGATCGTCTTCCAGTGAAGCTCCATCTCAGGCTGCTCAACACGGGTCTATGTTAAGTACTTCAGTCCATAGTCCTTGTTCTTCCAGTTACCCCAAGTATATTGCTCTACCGCTGGTCAATCGAGGAATAAAGATTCTTGATGTAAATGGCAACAGAATCGGTCGGTTAACTAGGTCGTCACATGGTCATTCTCGTATGGTA ] [+] EMBL CD094775 [ TGGTCCAGTTGTTAGCATTAGAACCGATGCAGCAATCAATCGCTTGGGTTTGTCTGGTTATGGTTCAGGTATATCATATCAGCCAACAGAAACAACTAATCCTACTTCAACTGTAATTGGATCGTCTTCCAGTGAAGCTCCATCTCAGGCTGCTCAACACGGGTCTATGTTAAGTACTTCAGTCCATAGTCCTTGTTCTTCCAGTTACCCCAAGTATATTGCTCTACCGCTGGTCAATCGAGGAATAAAGATTCTTGATGTAAATGGCAACAGAATTG ] [-] EMBL CD073957 [ GTCAATCGAGGAATAAAGATTCTTGATGTAAATGGCAACAGAATTGGTCGGTTAACTAGGTCGTCACATGGTCATTCTCGTATGGTAACTTGTGTTGCATGGGCGAATGAAGGTGTTCACAATTTCTTCTCATCTGGTTTTGATGGTCTCTTATTGGCTTGGCAAATTCGCATTGGAAATGTTTAGCACATAAATCCTTAAAATCTATTCTTTTACTGCAATAATTCGTTGACTTCAGTATTATGGCGGTTTTCTTTTTCGTGATATGATGTCATATGTGTATGGTTATACCTTTTACACTTTGTACATACACTTTACACATATGTAAGATACTAACTACCTATCTACTTATGTTTTCATATTGACACTGATTAATTTTCATTTTTTCAAAGTAATGATTTTCTCTTTATTTTGTTTTTTTCTCGTTACTATTTCGTTGTTAGTTGTGTAGAATATTTTCACTAGGAGTGATCAATTCAGGTTATTACTATTGTCTTTAATGATTATTCGATTAATATTCTTATTATTACTGTTACTACTATCTCTTTACTATTCATTTTGTTGTTATTTGTCTGCGAACAAACTGCCTTTTTATTTATTACTTATAACGGTGTAAATAAGTATTTATGGAAAGT ] [-] EMBL CD076400 [ TTTGATGGTCTCTTATTGGCTTGGCAAATTCGCATTGGAAATGTTTAGCACATAAATCCTTAAAATCTATTCTTTTACTGCAATAATTCGTTGACTTCAGTATTATGGCGGTTTTCTTTTTCGTGATATGATGTCATATGTGTATGGTTATACCTTTTACACTTTGTACATACACTTTACACATATGTAAGATACTAACTACCTATCTACTTATGTTTTCATATTGACACTGATTAATTTTCATTTTTTCAAAGTAATGATTTTCTCTTTATTTTGTTTTTTTCTCGTTACTATTTCGTTGTTAGTTGTGTAGAATATTTTCACTAGGAGTGATCAATTCAGGTTATTACTATTGTCTTTAATGATTATTCGATTAATATTCTTATTATTACTGTTACTACTATCTCTTTACTATTCATTTTGTTGTTATTTGTCTGCGAACAAACTGCCTTTTTATTTATTACTTATAACGGTGTAAATATGTATTTATGGAAAGTTTTGCTAGTAAATCAGATTGT] consensusID : consensus_8968#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 234 fasta sequence [GGAATGAGTACAATCTCAGCAACTGCTGTCAAGTCAGGGATTGATCCGGGTGGTTTGTATGATTCAGATGAAACGATGAATTTGTTAGTTGGTTCTACAGAAGAATATTCTCCAGTTCGTATTGCAGTTAATCCACCAATCGTTGTTCGACATCCTCATGCAGTATTTCAGTCTGCAAACTTATGTTTATCATCGTCGGGTACAGTATGGAATTATACTAGTGCTTCAGGATGC] [-] EMBL CD067688 [GGAATGAGTACAATCTCAGCAACTGCTGTCAAGTCAGGGATTGATCCGGGTGGTTTGTATGATTCAGATGAAACGATGAATTTGTTAGTTGGTTCTACAGAAGAATATTCTCCAGTTCGTATTGCAGTTAATCCACCAATCGTTGTTCGACATCCTCATGCAGTATTTCAGTCTGCAAACTTATGTTTATCATCGTCGGGTACAGTATGGAATTATACTAGTGCTTCAGGATGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8968#0 ---------------------------------------ACGAGGCCAAGAATTTGGCAC 21 consensus_8968#1 GGAATGAGTACAATCTCAGCAACTGCTGTCAAGTCAGGGATTGATCCGGGTGGTTTGTAT 60 * ** * ** * * consensus_8968#0 GAGGCGCA-GAGACGTTTTTTATTCTTCTCATCATTTAATGACAAAGATTCTCCAGTTCG 80 consensus_8968#1 GATTCAGATGAAACGATGAATTTGTTAGTTGGT-TCTACAGAAGAATATTCTCCAGTTCG 119 ** * * ** *** * * * * * * ** ** ** ************* consensus_8968#0 TATTGCAGCTAATCCACCTATCGCTGTTCGACATCCTCATGCAGTATTTCAGTCTGCAAA 140 consensus_8968#1 TATTGCAGTTAATCCACCAATCGTTGTTCGACATCCTCATGCAGTATTTCAGTCTGCAAA 179 ******** ********* **** ************************************ consensus_8968#0 CTTATGTTTATCATCATCGGGTACAGTATGGAATTCTACTAGTGCTTCAGGATGCAATAT 200 consensus_8968#1 CTTATGTTTATCATCGTCGGGTACAGTATGGAATTATACTAGTGCTTCAGGATGC----- 234 *************** ******************* ******************* consensus_8968#0 TATCGACTCATCACCTTTGTCTGCTGCTGATTTTGTTTACGGACGGGAACAGCTAGTAAC 260 consensus_8968#1 ------------------------------------------------------------ consensus_8968#0 AGCATCGTGGGATCGTTTAGGTAGGACATATGATCTTGCAACTGGACAAGAGCTAGAGTC 320 consensus_8968#1 ------------------------------------------------------------ consensus_8968#0 ACTTACGGGACATGATGATCATTTGACAGATGTTCGTTGTGAACCAGGTGGATTTCCTGT 380 consensus_8968#1 ------------------------------------------------------------ consensus_8968#0 TGTTGTCACATCGTCAAGGGATTGTACATTTCGTTTGTGGGATTTTCGTCAACCAGGAAT 440 consensus_8968#1 ------------------------------------------------------------ consensus_8968#0 GCGGGTTCATGTTCAACAGGCCCATAGTCAAACAGTTTCAACCACACAATTTTTGGCACC 500 consensus_8968#1 ------------------------------------------------------------ consensus_8968#0 TGGTTCTCCTGAACGTCTTATAAGCGCTGGTGCTGATAGATTTTGTCGTATTTGGGACTT 560 consensus_8968#1 ------------------------------------------------------------ consensus_8968#0 GAGACAAAGCCGTGGTCCAGTTGTTAGCATTAGAACCGATGCAGCAATCAATCGCTTGGG 620 consensus_8968#1 ------------------------------------------------------------ consensus_8968#0 TTTGTCTGGTTATGGTTCAGGTATATCATATCAGCCAACAGAAACAACTAATCCTACTTC 680 consensus_8968#1 ------------------------------------------------------------ consensus_8968#0 AACTGTAATTGGATCGTCTTCCAGTGAAGCTCCATCTCAGGCTGCTCAACACGGGTCTAT 740 consensus_8968#1 ------------------------------------------------------------ consensus_8968#0 GTTAAGTACTTCAGTCCATAGTCCTTGTTCTTCCAGTTACCCCAAGTATATTGCTCTACC 800 consensus_8968#1 ------------------------------------------------------------ consensus_8968#0 GCTGGTCAATCGAGGAATAAAGATTCTTGATGTAAATGGCAACAGAATTGGTCGGTTAAC 860 consensus_8968#1 ------------------------------------------------------------ consensus_8968#0 TAGGTCGTCACATGGTCATTCTCGTATGGTAACTTGTGTTGCATGGGCGAATGAAGGTGT 920 consensus_8968#1 ------------------------------------------------------------ consensus_8968#0 TCACAATTTCTTCTCATCTGGTTTTGATGGTCTCTTATTGGCTTGGCAAATTCGCATTGG 980 consensus_8968#1 ------------------------------------------------------------ consensus_8968#0 AAATGTTTAGCACATAAATCCTTAAAATCTATTCTTTTACTGCAATAATTCGTTGACTTC 1040 consensus_8968#1 ------------------------------------------------------------ consensus_8968#0 AGTATTATGGCGGTTTTCTTTTTCGTGATATGATGTCATATGTGTATGGTTATACCTTTT 1100 consensus_8968#1 ------------------------------------------------------------ consensus_8968#0 ACACTTTGTACATACACTTTACACATATGTAAGATACTAACTACCTATCTACTTATGTTT 1160 consensus_8968#1 ------------------------------------------------------------ consensus_8968#0 TCATATTGACACTGATTAATTTTCATTTTTTCAAAGTAATGATTTTCTCTTTATTTTGTT 1220 consensus_8968#1 ------------------------------------------------------------ consensus_8968#0 TTTTTCTCGTTACTATTTCGTTGTTAGTTGTGTAGAATATTTTCACTAGGAGTGATCAAT 1280 consensus_8968#1 ------------------------------------------------------------ consensus_8968#0 TCAGGTTATTACTATTGTCTTTAATGATTATTCGATTAATATTCTTATTATTACTGTTAC 1340 consensus_8968#1 ------------------------------------------------------------ consensus_8968#0 TACTATCTCTTTACTATTCATTTTGTTGTTATTTGTCTGCGAACAAACTGCCTTTTTATT 1400 consensus_8968#1 ------------------------------------------------------------ consensus_8968#0 TATTACTTATAACGGTGTAAATAAGTATTTATGGAAAGTTTTGCTAGTAAATCAGATTGT 1460 consensus_8968#1 ------------------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||