These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8969#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 590 fasta sequence [GCGCGCAGTTTACTATTGTCTGCGTTACAACGTGCTCAGCTGTACTGCTAGGCAAATATCTGCTTCCCATAAGTTATTTGGATTGTTATTTGTTTGCTTATGATCATATCAGCGGTTCAGGATAGTATTTATCTCCCAACTCTTGTGGAATTTTAAAAGGGCTCTTTATAATAAAAGTAACTTGGTCAAAAGGAATGATGGCGTTGCGGCGTCTAACAACCAATATATTGTGTCTAAGACCGCTTAATTTATGCACAAGTGGAACTAGATTCTTTTCTGTTAACTATCAACTATCAGGATTGTCTGCATCTTCTATTTTGTACCCAGTAAAATCAAAGTCTGATAATTTCGTATATAACGCCGCTTTCGCATCAGGACTCTACGTTCCATGTCGTTACAGTACTATATTCAGCAATTATCCTGGTGAAATGTTATGGGAAGGTGTAACTGGACCAAAAGGAGGCTCANAAAGACGTGCACGAGGAAAACGCAGAGTTACAAGGCAAAAAATAAATCTTCATGTGGNGCAAAGATTAGGTTTTGGCAAAGCCTCCATACAGTGGCCTGTTCTTACCACACCTGCTTCTTCN] [+] EMBL CD188672 [GCGCGCAGTTTACTATTGTCTGCGTTACAACGTGCTCAGCTGTACTGCTAGGCAAATATCTGCTTCCCATAAGTTATTTGGATTGTTATTTGTTTGCTTATGATCATATCAGCGGTTCAGGATAGTATTTATCTCCCAACTCTTGTGGAATTTTAAAAGGGCTCTTTATAATAAAAGTAACTTGGTCAAAAGGAATGATGGCGTTGCGGCGTCTAACAACCAATATATTGTGTCTAAGACCGCTTAATTTATGCACAAGTGGAACTAGATTCTTTTCTGCTAACTATCAACTATCAGGATTGTCTGCATCTTCTATTTTGTACCCAGTAAAATCAAAGTCTGATAATTTCGTATATAACGC ] [+] EMBL CD153434 [ TGCGTTACAACGTGCTCAGCTGTACTGCTAGGCAAATATCTGCTTCCCATAAGTTATTTGGATTGTTATTTGTTTGCTTATGATCATATCAGCGGTTCAGGATAGTATTTATCTCCCAACTCTTGTGGAATTTTAAAAGGGCTCTTTATAATAAAAGTAACTTGGTCAAAAGGAATGATGGCGTTGCGGCGTCTAACAACCAATATATTGTGTCTAAGACCGCTTAATTTATGCACAAGTGGAACTAGATTCTTTTCTGTTAACTATCAACTATCAGGATTGTCTGCATCTTCTATTTTGTACCCAGTAAAATCAAAGTCTGATAATTTCGTATATAACGCCGCTTTCGCATCAGGACTCTACGTTCCATGTCGTTACAGTACTATATTCAGCAATTATCCTGGTGAAATGTTATGGGAAGGTGTAACTGGACCAAAAGGAGGCTCANAAAGACGTGCACGAGGAAAACGCAGAGTTACAAGGCAAAAAATAAATCTTCATGTGGGGCAAAGATTAAGTTTTGGCAAAGCCTCCATACAGTGGCCTGTTCTTACCACACCTGCTTCTTCN] [+] EMBL CD153094 [ TGCGTTACAACGTGCTCAGCTGTACTGCTAGGCAAATATCTGCTTCCCATAAGTTATTTGGATTGTTATTTGTTTGCTTATGATCATATCAGCGGTTCAGGATAGTATTTATCTCCCAACTCTTGTGGAATTTTAAAAGGGCTCTTTATAATAAAAGTAACTTGGTCAAAAGGAATGATGGCGTTGCGGCGTCTAACAACCAATATATTGTGTCTAAGACCGCTTAATTTATGCACAAGTGGAACTAGATTCTTTTCTGTTAACTATCAACTATCAGGATTGTCTGCATCTTCTATTTTGTACCCAGTAAAATCAAAGTCTGATAATTTCGTATATAACGCCGCTTTCGCATCAGGACTCTACGTTCCATGTCGTTACAGTACTATATTCAGCAATTATCCTGGTGAAATGTTATGGGAAGGTGTAACTGGACCAAAAGGAGGCTCAAAAAGACGTGCACGAGGAAAACGCAGAGTTACAAGGCAAAAAATAAATCTTCATGTGGNGCAAAGATTAGGTTTTGGC AAGCCTCCATACAGTGGC ] [+] EMBL CD153393 [ TGCGTTACAACGTGCTCAGCTGTACTGCTAGGCAAATATCTGCTTCCCATAAGTTATTAGGATTGTTATTTGTTTGCTTATGATCATATCAGCGGTTCAGGATAGTATTTATCTCCCAACTCTTGTGGAATTTTAAAAGGGCTCTTTATAATAAAAGTAACTTGGTCAAAAGGAATGATGGCGTTGCGGCGTCTAACAACCAATATATTGTGTCTAAGACCGCTTAATTTATGCACAAGTGGAACTAGATTCTTTTCTGTTAACTATCAACTATCAGGATTGTCTGCATCTTCTATTTTGTACCCAGTAAAATCAAAGTCTGATAATTTCGTATATAACGCCGCTTTCGCATCAGGACTCTACGTTCCATGTCGTTACAGTACTATATTCAGCAATTATCCTGGTGAAGTGTTATGGGAAGGTGTAACTGGACCAAAAGGAGGCTCAAAAAGACGTGCACGAGGAAAACGCAGAGTTACAAGGCANAAAATAAATCTTCATGTGGNGCANAGATTAGGTTNTGGCANAGCCTC ] [+] EMBL CD153178 [ TGCGTTACAACGTGCTCAGCTGTACTGCTAGGCAAATATCTGCTTCCCATAAGTTATTTGGATTGTTATTTGTTTGCTTATGATCATATCAGCGGTTCAGGATAGTATTTATCTCCCAACTCTTGTGGAATTTTAAAAGGGCTCTTTATAATAAAAGTAACTTGGTCAAAAGGAATGATGGCGTTGCGGCGTCTAACAACCAATATATTGTGTCTAAGACCGCTTAATTTATGCACAAGTGGAACTAGATTCTTTTCTGTTAACTATCAACTATCAGGATTGTCTGCATCTTCTATTTTGTACCCAGTAAAATCAAAGTCTGATAATTTCGTATATAACGCCGCTTTCGCATCAGGACTCTACGTTCCATGTCGTTACGGTACTATATTCAGCAATTATCCTGGTGAAATGTTATGGGAAGGTGTAACTGGACCAAAAGGAGGCTCANAAAGACGTGCACGAGGAAAACGCAGAGTTACAAGGCANAAAATAAATCTTCATGTGGNGCGAAGATTAGGT ] consensusID : consensus_8969#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 589 fasta sequence [CTGAGGGGGTTGCTCTTACCCTGCATATTCTATTTTGTACCCAGTAAAATCAGAGTCTGATAATTTCGTATATAACGCCGCTTTCGCATCAGGACTCTACGTTCCATGTCGTTACAGTACTATATTCAGCAATTATCCTGGTGAAATGTTATGGGAAGGTGTAACTGGACCAAAAGGAGGCTCAAAAAGACGTGCACGAGGAAAACGCAGAGTTACAAGGCAAAAAATAAATCTTCATGTGGGGCAAAGATTAGGTTTTGGCAAAGCCTCCATACAGTGGCCTGGTCTTACCACACCTGCTTCTTCAAGTATCAAGCAAGGTGACTACAATGAAAAATATTTTGAAAGACTGGAAATGCTTCGTAACAAATCTGCCGTTAAAAAGAAACGTATGAGATTAGCTCCTTTACAACGTGGTTGGACAGGAAAGTTATTGGGAGGACAATCTGTTGGTCCGCCTACACCAAATCAATCCGATTTTGAATGTTTTGTTATCGAGNCAAAAGTTGTCGCAACAGTGACTGCAACATAAGGACGTTATCGGCGATTTTCAGTTGTTGGTGCACTGGCANTGGGCAAGGGTTATGTG] [+] EMBL CD129611 [CTGAGGGGGTTGCTCTTACCCTGCATATTCTATTTTGTACCCAGTAAAATCAGAGTCTGATAATTTCGTATATAACGCCGCTTTCGCATCAGGACTCTACGTTCCATGTCGTTACAGTACTATATTCAGCAATTATCCTGGTGAAATGTTATGGGAAGGTGTAACTGGACCAAAAGGAGGCTCAAAAAGACGTGCACGAGGAAAACGCAGAGTTACAAGGCAAAAAATAAATCTTCATGTGGGGCAAAGATTAGGTTTTGGCAAAGCCTCCATACAGTGGCCTGGTCTTACCACACCTGCTTCTTCAAGTATCAAGCAAGGTGACTACAATGAAAAATATTTTGAAAGACTGGAAATGCTTCGTAACAAATCTGCCGTTAAAAAGAAACGTATGAGATTAGCTCCTTTACAACGTGGTTGGACAGGAAAGTTATTGGGAGGACAATCTGTTGGTCCGCCTACACCAAATCAATCCGATTTTGAATGTTTTGTTATCGAGNCAAAAGTTGTCGCAACAGTGACTGCAACATAAGGACGTTATCGGCGATTTTCAGTTGTTGGTGCACTGGCANTGGGCAAGGGTTATGTG] [+] EMBL CD067663 [ CTATTTTGTACCCAGTAAAATCAGAGTCTGATAATTTCGTATATAACGCCGCTTTCGCATCAGGACTCTACGTTCCATGTCGTTACAGTACTATATTCAGCAATTATCCTGGTGAAATGTTATGGGAAGGTGTAACTGGACCAAAAGGAGGCTCAAAAAGACGTGCACGAGGAAAACGCAGAGTTACAAGGCAAAAAATAAATCTTCATGTGGGGCAAAGATTAGGTTTTGGCAAAGCCTCCATACAGTGGCCTGGTCTTACCACACCTGCTTCTTCAAGTATCAAGCAAGGTGACTACAATGAAAAATATTTTGAAAGACTGGAAATGCTTCGTAACAAATCTGCCGTTAAAAAGAAACGTATGAa ] consensusID : consensus_8969#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 318 fasta sequence [CTTCTATNGGGAGGGACAATCTGTTGGTCCGCCTACACCAAATCATCCGGATTTGATTTGTTTTGTTATCGAGTCAAAAGTTGTCGCAACAGTGACTGCAACAAAAGGACGTTATCGTCGATTNTCAGTTGTTGTTGCAACTGGCAATGGACAAGGTTTATGTGGTATTGGTAAAGCAAAAGCTTTAAATTTATTATCTGCAACTCGACGTGCTAAATTACGTGCTTCACAAAATATTGTATCACTTGAACTTAAAGAAGGAAGAACATTATGGCATGTTGGATATGTTTGTCAGTGGAACAGTAAGATCTTTGCAAC] [-] EMBL CD072774 [CTTCTATNGGGAGGGACAATCTGTTGGTCCGCCTACACCAAATCATCCGGATTTGATTTGTTTTGTTATCGAGTCAAAAGTTGTCGCAACAGTGACTGCAACAAAAGGACGTTATCGTCGATTNTCAGTTGTTGTTGCAACTGGCAATGGACAAGGTTTATGTGGTATTGGTAAAGCAAAAGCTTTAAATTTATTATCTGCAACTCGACGTGCTAAATTACGTGCTTCACAAAATATTGTATCACTTGAACTTAAAGAAGGAAGAACATTATGGCATGTTGGATATGTTTGTCAGTGGAACAGTAAGATCTTTGCAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8969#0 GCGCGCAGTTTACTATTGTCTGCGTTACAACGTGCTCAGCTGTACTGCTAGGCAAATATC 60 consensus_8969#1 ------------------------------------------------------------ consensus_8969#2 ------------------------------------------------------------ consensus_8969#0 TGCTTCCCATAAGTTATTTGGATTGTTATTTGTTTGCTTATGATCATATCAGCGGTTCAG 120 consensus_8969#1 ------------------------------------------------------------ consensus_8969#2 ------------------------------------------------------------ consensus_8969#0 GATAGTATTTATCTCCCAACTCTTGTGGAATTTTAAAAGGGCTCTTTATAATAAAAGTAA 180 consensus_8969#1 ------------------------------------------------------------ consensus_8969#2 ------------------------------------------------------------ consensus_8969#0 CTTGGTCAAAAGGAATGATGGCGTTGCGGCGTCTAACAACCAATATATTGTGTCTAAGAC 240 consensus_8969#1 ------------------------------------------------------------ consensus_8969#2 ------------------------------------------------------------ consensus_8969#0 CGCTTAATTTATGCACAAGTGGAACTAGATTCTTTTCTGTTAACTATCAACTATCAGGAT 300 consensus_8969#1 -------------------------------------------CTGAGGGGGTTGCTCTT 17 consensus_8969#2 -------CTTCTATN-GGGAGGGACAATCTGTTGGTCCGCCTACACCAAATCATCCGGAT 52 * * * consensus_8969#0 TGTCTGCATCTTCTATTTTGTACCCAGTAAAATCAAAGTCTGATAATTTCGTATATAACG 360 consensus_8969#1 ACCCTGCATATTCTATTTTGTACCCAGTAAAATCAGAGTCTGATAATTTCGTATATAACG 77 consensus_8969#2 TTGATTTGTTTTGT-TATCGAGTCAAAAGTTGTCGCAA--CAGTGACTGCA-ACAAAAGG 108 * * ** * * * * * * ** * * * * * * * ** * consensus_8969#0 CCGCTTTCGC--ATCAGGACTCTACGTTCCATGTCGTTACAGTACTATATTCAGCAATTA 418 consensus_8969#1 CCGCTTTCGC--ATCAGGACTCTACGTTCCATGTCGTTACAGTACTATATTCAGCAATTA 135 consensus_8969#2 ACGTTATCGTCGATTNTCAGTTGTTGTTGCAACTGGCAATGG-ACAAGGTTTA--TGTGG 165 ** * *** ** * * *** ** * * * * ** * ** * * consensus_8969#0 TCCTGGTGAAATGTTATGGGAAGGTGTAACTGGACCAAAAGGAGGCTCANAAAGACGTGC 478 consensus_8969#1 TCCTGGTGAAATGTTATGGGAAGGTGTAACTGGACCAAAAGGAGGCTCAAAAAGACGTGC 195 consensus_8969#2 TATTGGTAAAGCAAAAGCTTTAAATTTATTATCTGCAACTCGACGTGCTAAATTACGTGC 225 * **** ** * * * ** *** ** * * ** ****** consensus_8969#0 ACGAGGAAAA--CGCAGAGTTACAAGGCAAAAAATAAATCTTCATGTGGNGCAAAGATTA 536 consensus_8969#1 ACGAGGAAAA--CGCAGAGTTACAAGGCAAAAAATAAATCTTCATGTGGGGCAAAGATTA 253 consensus_8969#2 TTCACAAAATATTGTATCACTTGAACTTAAAGAAGGAAGAACATTATGGCATGTTGGATA 285 * *** * * * ** *** ** ** * *** * ** consensus_8969#0 GGTTTTGGCAAAGCCTCCATACAGTGGCCTGTTCTTACCACACCTGCTTCTTCN------ 590 consensus_8969#1 GGTTTTGGCAAAGCCTCCATACAGTGGCCTGGTCTTACCACACCTGCTTCTTCAAGTATC 313 consensus_8969#2 TGTTT-GTCAGTG-----GAACAGTAAGATCTTTGCAAC--------------------- 318 **** * ** * ***** * * * * consensus_8969#0 ------------------------------------------------------------ consensus_8969#1 AAGCAAGGTGACTACAATGAAAAATATTTTGAAAGACTGGAAATGCTTCGTAACAAATCT 373 consensus_8969#2 ------------------------------------------------------------ consensus_8969#0 ------------------------------------------------------------ consensus_8969#1 GCCGTTAAAAAGAAACGTATGAGATTAGCTCCTTTACAACGTGGTTGGACAGGAAAGTTA 433 consensus_8969#2 ------------------------------------------------------------ consensus_8969#0 ------------------------------------------------------------ consensus_8969#1 TTGGGAGGACAATCTGTTGGTCCGCCTACACCAAATCAATCCGATTTTGAATGTTTTGTT 493 consensus_8969#2 ------------------------------------------------------------ consensus_8969#0 ------------------------------------------------------------ consensus_8969#1 ATCGAGNCAAAAGTTGTCGCAACAGTGACTGCAACATAAGGACGTTATCGGCGATTTTCA 553 consensus_8969#2 ------------------------------------------------------------ consensus_8969#0 ------------------------------------ consensus_8969#1 GTTGTTGGTGCACTGGCANTGGGCAAGGGTTATGTG 589 consensus_8969#2 ------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||