cluster # 8969

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 8969 cluster # 8969 Sequences # 8 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8969#0 length = 590 sequences # 5

consensus_8969#1 length = 589 sequences # 2
consensus_8969#2 length = 318 sequences # 1

consensusID : consensus_8969#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 590
fasta sequence

                              [GCGCGCAGTTTACTATTGTCTGCGTTACAACGTGCTCAGCTGTACTGCTAGGCAAATATCTGCTTCCCATAAGTTATTTGGATTGTTATTTGTTTGCTTATGATCATATCAGCGGTTCAGGATAGTATTTATCTCCCAACTCTTGTGGAATTTTAAAAGGGCTCTTTATAATAAAAGTAACTTGGTCAAAAGGAATGATGGCGTTGCGGCGTCTAACAACCAATATATTGTGTCTAAGACCGCTTAATTTATGCACAAGTGGAACTAGATTCTTTTCTGTTAACTATCAACTATCAGGATTGTCTGCATCTTCTATTTTGTACCCAGTAAAATCAAAGTCTGATAATTTCGTATATAACGCCGCTTTCGCATCAGGACTCTACGTTCCATGTCGTTACAGTACTATATTCAGCAATTATCCTGGTGAAATGTTATGGGAAGGTGTAACTGGACCAAAAGGAGGCTCANAAAGACGTGCACGAGGAAAACGCAGAGTTACAAGGCAAAAAATAAATCTTCATGTGGNGCAAAGATTAGGTTTTGGCAAAGCCTCCATACAGTGGCCTGTTCTTACCACACCTGCTTCTTCN]

[+] EMBL CD188672             [GCGCGCAGTTTACTATTGTCTGCGTTACAACGTGCTCAGCTGTACTGCTAGGCAAATATCTGCTTCCCATAAGTTATTTGGATTGTTATTTGTTTGCTTATGATCATATCAGCGGTTCAGGATAGTATTTATCTCCCAACTCTTGTGGAATTTTAAAAGGGCTCTTTATAATAAAAGTAACTTGGTCAAAAGGAATGATGGCGTTGCGGCGTCTAACAACCAATATATTGTGTCTAAGACCGCTTAATTTATGCACAAGTGGAACTAGATTCTTTTCTGCTAACTATCAACTATCAGGATTGTCTGCATCTTCTATTTTGTACCCAGTAAAATCAAAGTCTGATAATTTCGTATATAACGC                                                                                                                                                                                                                                     ]
[+] EMBL CD153434             [                    TGCGTTACAACGTGCTCAGCTGTACTGCTAGGCAAATATCTGCTTCCCATAAGTTATTTGGATTGTTATTTGTTTGCTTATGATCATATCAGCGGTTCAGGATAGTATTTATCTCCCAACTCTTGTGGAATTTTAAAAGGGCTCTTTATAATAAAAGTAACTTGGTCAAAAGGAATGATGGCGTTGCGGCGTCTAACAACCAATATATTGTGTCTAAGACCGCTTAATTTATGCACAAGTGGAACTAGATTCTTTTCTGTTAACTATCAACTATCAGGATTGTCTGCATCTTCTATTTTGTACCCAGTAAAATCAAAGTCTGATAATTTCGTATATAACGCCGCTTTCGCATCAGGACTCTACGTTCCATGTCGTTACAGTACTATATTCAGCAATTATCCTGGTGAAATGTTATGGGAAGGTGTAACTGGACCAAAAGGAGGCTCANAAAGACGTGCACGAGGAAAACGCAGAGTTACAAGGCAAAAAATAAATCTTCATGTGGGGCAAAGATTAAGTTTTGGCAAAGCCTCCATACAGTGGCCTGTTCTTACCACACCTGCTTCTTCN]
[+] EMBL CD153094             [                    TGCGTTACAACGTGCTCAGCTGTACTGCTAGGCAAATATCTGCTTCCCATAAGTTATTTGGATTGTTATTTGTTTGCTTATGATCATATCAGCGGTTCAGGATAGTATTTATCTCCCAACTCTTGTGGAATTTTAAAAGGGCTCTTTATAATAAAAGTAACTTGGTCAAAAGGAATGATGGCGTTGCGGCGTCTAACAACCAATATATTGTGTCTAAGACCGCTTAATTTATGCACAAGTGGAACTAGATTCTTTTCTGTTAACTATCAACTATCAGGATTGTCTGCATCTTCTATTTTGTACCCAGTAAAATCAAAGTCTGATAATTTCGTATATAACGCCGCTTTCGCATCAGGACTCTACGTTCCATGTCGTTACAGTACTATATTCAGCAATTATCCTGGTGAAATGTTATGGGAAGGTGTAACTGGACCAAAAGGAGGCTCAAAAAGACGTGCACGAGGAAAACGCAGAGTTACAAGGCAAAAAATAAATCTTCATGTGGNGCAAAGATTAGGTTTTGGC AAGCCTCCATACAGTGGC                          ]
[+] EMBL CD153393             [                    TGCGTTACAACGTGCTCAGCTGTACTGCTAGGCAAATATCTGCTTCCCATAAGTTATTAGGATTGTTATTTGTTTGCTTATGATCATATCAGCGGTTCAGGATAGTATTTATCTCCCAACTCTTGTGGAATTTTAAAAGGGCTCTTTATAATAAAAGTAACTTGGTCAAAAGGAATGATGGCGTTGCGGCGTCTAACAACCAATATATTGTGTCTAAGACCGCTTAATTTATGCACAAGTGGAACTAGATTCTTTTCTGTTAACTATCAACTATCAGGATTGTCTGCATCTTCTATTTTGTACCCAGTAAAATCAAAGTCTGATAATTTCGTATATAACGCCGCTTTCGCATCAGGACTCTACGTTCCATGTCGTTACAGTACTATATTCAGCAATTATCCTGGTGAAGTGTTATGGGAAGGTGTAACTGGACCAAAAGGAGGCTCAAAAAGACGTGCACGAGGAAAACGCAGAGTTACAAGGCANAAAATAAATCTTCATGTGGNGCANAGATTAGGTTNTGGCANAGCCTC                                     ]
[+] EMBL CD153178             [                    TGCGTTACAACGTGCTCAGCTGTACTGCTAGGCAAATATCTGCTTCCCATAAGTTATTTGGATTGTTATTTGTTTGCTTATGATCATATCAGCGGTTCAGGATAGTATTTATCTCCCAACTCTTGTGGAATTTTAAAAGGGCTCTTTATAATAAAAGTAACTTGGTCAAAAGGAATGATGGCGTTGCGGCGTCTAACAACCAATATATTGTGTCTAAGACCGCTTAATTTATGCACAAGTGGAACTAGATTCTTTTCTGTTAACTATCAACTATCAGGATTGTCTGCATCTTCTATTTTGTACCCAGTAAAATCAAAGTCTGATAATTTCGTATATAACGCCGCTTTCGCATCAGGACTCTACGTTCCATGTCGTTACGGTACTATATTCAGCAATTATCCTGGTGAAATGTTATGGGAAGGTGTAACTGGACCAAAAGGAGGCTCANAAAGACGTGCACGAGGAAAACGCAGAGTTACAAGGCANAAAATAAATCTTCATGTGGNGCGAAGATTAGGT                                                   ]




>consensus_8969#0
GCGCGCAGTTTACTATTGTCTGCGTTACAACGTGCTCAGCTGTACTGCTAGGCAAATATC
TGCTTCCCATAAGTTATTTGGATTGTTATTTGTTTGCTTATGATCATATCAGCGGTTCAG
GATAGTATTTATCTCCCAACTCTTGTGGAATTTTAAAAGGGCTCTTTATAATAAAAGTAA
CTTGGTCAAAAGGAATGATGGCGTTGCGGCGTCTAACAACCAATATATTGTGTCTAAGAC
CGCTTAATTTATGCACAAGTGGAACTAGATTCTTTTCTGTTAACTATCAACTATCAGGAT
TGTCTGCATCTTCTATTTTGTACCCAGTAAAATCAAAGTCTGATAATTTCGTATATAACG
CCGCTTTCGCATCAGGACTCTACGTTCCATGTCGTTACAGTACTATATTCAGCAATTATC
CTGGTGAAATGTTATGGGAAGGTGTAACTGGACCAAAAGGAGGCTCANAAAGACGTGCAC
GAGGAAAACGCAGAGTTACAAGGCAAAAAATAAATCTTCATGTGGNGCAAAGATTAGGTT
TTGGCAAAGCCTCCATACAGTGGCCTGTTCTTACCACACCTGCTTCTTCN

consensusID : consensus_8969#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 589
fasta sequence

                              [CTGAGGGGGTTGCTCTTACCCTGCATATTCTATTTTGTACCCAGTAAAATCAGAGTCTGATAATTTCGTATATAACGCCGCTTTCGCATCAGGACTCTACGTTCCATGTCGTTACAGTACTATATTCAGCAATTATCCTGGTGAAATGTTATGGGAAGGTGTAACTGGACCAAAAGGAGGCTCAAAAAGACGTGCACGAGGAAAACGCAGAGTTACAAGGCAAAAAATAAATCTTCATGTGGGGCAAAGATTAGGTTTTGGCAAAGCCTCCATACAGTGGCCTGGTCTTACCACACCTGCTTCTTCAAGTATCAAGCAAGGTGACTACAATGAAAAATATTTTGAAAGACTGGAAATGCTTCGTAACAAATCTGCCGTTAAAAAGAAACGTATGAGATTAGCTCCTTTACAACGTGGTTGGACAGGAAAGTTATTGGGAGGACAATCTGTTGGTCCGCCTACACCAAATCAATCCGATTTTGAATGTTTTGTTATCGAGNCAAAAGTTGTCGCAACAGTGACTGCAACATAAGGACGTTATCGGCGATTTTCAGTTGTTGGTGCACTGGCANTGGGCAAGGGTTATGTG]

[+] EMBL CD129611             [CTGAGGGGGTTGCTCTTACCCTGCATATTCTATTTTGTACCCAGTAAAATCAGAGTCTGATAATTTCGTATATAACGCCGCTTTCGCATCAGGACTCTACGTTCCATGTCGTTACAGTACTATATTCAGCAATTATCCTGGTGAAATGTTATGGGAAGGTGTAACTGGACCAAAAGGAGGCTCAAAAAGACGTGCACGAGGAAAACGCAGAGTTACAAGGCAAAAAATAAATCTTCATGTGGGGCAAAGATTAGGTTTTGGCAAAGCCTCCATACAGTGGCCTGGTCTTACCACACCTGCTTCTTCAAGTATCAAGCAAGGTGACTACAATGAAAAATATTTTGAAAGACTGGAAATGCTTCGTAACAAATCTGCCGTTAAAAAGAAACGTATGAGATTAGCTCCTTTACAACGTGGTTGGACAGGAAAGTTATTGGGAGGACAATCTGTTGGTCCGCCTACACCAAATCAATCCGATTTTGAATGTTTTGTTATCGAGNCAAAAGTTGTCGCAACAGTGACTGCAACATAAGGACGTTATCGGCGATTTTCAGTTGTTGGTGCACTGGCANTGGGCAAGGGTTATGTG]
[+] EMBL CD067663             [                             CTATTTTGTACCCAGTAAAATCAGAGTCTGATAATTTCGTATATAACGCCGCTTTCGCATCAGGACTCTACGTTCCATGTCGTTACAGTACTATATTCAGCAATTATCCTGGTGAAATGTTATGGGAAGGTGTAACTGGACCAAAAGGAGGCTCAAAAAGACGTGCACGAGGAAAACGCAGAGTTACAAGGCAAAAAATAAATCTTCATGTGGGGCAAAGATTAGGTTTTGGCAAAGCCTCCATACAGTGGCCTGGTCTTACCACACCTGCTTCTTCAAGTATCAAGCAAGGTGACTACAATGAAAAATATTTTGAAAGACTGGAAATGCTTCGTAACAAATCTGCCGTTAAAAAGAAACGTATGAa                                                                                                                                                                                                 ]




>consensus_8969#1
CTGAGGGGGTTGCTCTTACCCTGCATATTCTATTTTGTACCCAGTAAAATCAGAGTCTGA
TAATTTCGTATATAACGCCGCTTTCGCATCAGGACTCTACGTTCCATGTCGTTACAGTAC
TATATTCAGCAATTATCCTGGTGAAATGTTATGGGAAGGTGTAACTGGACCAAAAGGAGG
CTCAAAAAGACGTGCACGAGGAAAACGCAGAGTTACAAGGCAAAAAATAAATCTTCATGT
GGGGCAAAGATTAGGTTTTGGCAAAGCCTCCATACAGTGGCCTGGTCTTACCACACCTGC
TTCTTCAAGTATCAAGCAAGGTGACTACAATGAAAAATATTTTGAAAGACTGGAAATGCT
TCGTAACAAATCTGCCGTTAAAAAGAAACGTATGAGATTAGCTCCTTTACAACGTGGTTG
GACAGGAAAGTTATTGGGAGGACAATCTGTTGGTCCGCCTACACCAAATCAATCCGATTT
TGAATGTTTTGTTATCGAGNCAAAAGTTGTCGCAACAGTGACTGCAACATAAGGACGTTA
TCGGCGATTTTCAGTTGTTGGTGCACTGGCANTGGGCAAGGGTTATGTG

consensusID : consensus_8969#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 318
fasta sequence

                              [CTTCTATNGGGAGGGACAATCTGTTGGTCCGCCTACACCAAATCATCCGGATTTGATTTGTTTTGTTATCGAGTCAAAAGTTGTCGCAACAGTGACTGCAACAAAAGGACGTTATCGTCGATTNTCAGTTGTTGTTGCAACTGGCAATGGACAAGGTTTATGTGGTATTGGTAAAGCAAAAGCTTTAAATTTATTATCTGCAACTCGACGTGCTAAATTACGTGCTTCACAAAATATTGTATCACTTGAACTTAAAGAAGGAAGAACATTATGGCATGTTGGATATGTTTGTCAGTGGAACAGTAAGATCTTTGCAAC]

[-] EMBL CD072774             [CTTCTATNGGGAGGGACAATCTGTTGGTCCGCCTACACCAAATCATCCGGATTTGATTTGTTTTGTTATCGAGTCAAAAGTTGTCGCAACAGTGACTGCAACAAAAGGACGTTATCGTCGATTNTCAGTTGTTGTTGCAACTGGCAATGGACAAGGTTTATGTGGTATTGGTAAAGCAAAAGCTTTAAATTTATTATCTGCAACTCGACGTGCTAAATTACGTGCTTCACAAAATATTGTATCACTTGAACTTAAAGAAGGAAGAACATTATGGCATGTTGGATATGTTTGTCAGTGGAACAGTAAGATCTTTGCAAC]




>consensus_8969#2
CTTCTATNGGGAGGGACAATCTGTTGGTCCGCCTACACCAAATCATCCGGATTTGATTTG
TTTTGTTATCGAGTCAAAAGTTGTCGCAACAGTGACTGCAACAAAAGGACGTTATCGTCG
ATTNTCAGTTGTTGTTGCAACTGGCAATGGACAAGGTTTATGTGGTATTGGTAAAGCAAA
AGCTTTAAATTTATTATCTGCAACTCGACGTGCTAAATTACGTGCTTCACAAAATATTGT
ATCACTTGAACTTAAAGAAGGAAGAACATTATGGCATGTTGGATATGTTTGTCAGTGGAA
CAGTAAGATCTTTGCAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8969#0      GCGCGCAGTTTACTATTGTCTGCGTTACAACGTGCTCAGCTGTACTGCTAGGCAAATATC 60
consensus_8969#1      ------------------------------------------------------------
consensus_8969#2      ------------------------------------------------------------
                                                                                  

consensus_8969#0      TGCTTCCCATAAGTTATTTGGATTGTTATTTGTTTGCTTATGATCATATCAGCGGTTCAG 120
consensus_8969#1      ------------------------------------------------------------
consensus_8969#2      ------------------------------------------------------------
                                                                                  

consensus_8969#0      GATAGTATTTATCTCCCAACTCTTGTGGAATTTTAAAAGGGCTCTTTATAATAAAAGTAA 180
consensus_8969#1      ------------------------------------------------------------
consensus_8969#2      ------------------------------------------------------------
                                                                                  

consensus_8969#0      CTTGGTCAAAAGGAATGATGGCGTTGCGGCGTCTAACAACCAATATATTGTGTCTAAGAC 240
consensus_8969#1      ------------------------------------------------------------
consensus_8969#2      ------------------------------------------------------------
                                                                                  

consensus_8969#0      CGCTTAATTTATGCACAAGTGGAACTAGATTCTTTTCTGTTAACTATCAACTATCAGGAT 300
consensus_8969#1      -------------------------------------------CTGAGGGGGTTGCTCTT 17
consensus_8969#2      -------CTTCTATN-GGGAGGGACAATCTGTTGGTCCGCCTACACCAAATCATCCGGAT 52
                                                                 *         *     *

consensus_8969#0      TGTCTGCATCTTCTATTTTGTACCCAGTAAAATCAAAGTCTGATAATTTCGTATATAACG 360
consensus_8969#1      ACCCTGCATATTCTATTTTGTACCCAGTAAAATCAGAGTCTGATAATTTCGTATATAACG 77
consensus_8969#2      TTGATTTGTTTTGT-TATCGAGTCAAAAGTTGTCGCAA--CAGTGACTGCA-ACAAAAGG 108
                          *   * ** * * * *   * *      **  *      * * * *  * * ** *

consensus_8969#0      CCGCTTTCGC--ATCAGGACTCTACGTTCCATGTCGTTACAGTACTATATTCAGCAATTA 418
consensus_8969#1      CCGCTTTCGC--ATCAGGACTCTACGTTCCATGTCGTTACAGTACTATATTCAGCAATTA 135
consensus_8969#2      ACGTTATCGTCGATTNTCAGTTGTTGTTGCAACTGGCAATGG-ACAAGGTTTA--TGTGG 165
                       ** * ***   **    * *    *** **  * *  *  * ** *  ** *    *  

consensus_8969#0      TCCTGGTGAAATGTTATGGGAAGGTGTAACTGGACCAAAAGGAGGCTCANAAAGACGTGC 478
consensus_8969#1      TCCTGGTGAAATGTTATGGGAAGGTGTAACTGGACCAAAAGGAGGCTCAAAAAGACGTGC 195
consensus_8969#2      TATTGGTAAAGCAAAAGCTTTAAATTTATTATCTGCAACTCGACGTGCTAAATTACGTGC 225
                      *  **** **     *     *  * **       ***   ** *  *  **  ******

consensus_8969#0      ACGAGGAAAA--CGCAGAGTTACAAGGCAAAAAATAAATCTTCATGTGGNGCAAAGATTA 536
consensus_8969#1      ACGAGGAAAA--CGCAGAGTTACAAGGCAAAAAATAAATCTTCATGTGGGGCAAAGATTA 253
consensus_8969#2      TTCACAAAATATTGTATCACTTGAACTTAAAGAAGGAAGAACATTATGGCATGTTGGATA 285
                         *  ***    * *    *  **   *** **  **      * ***      *  **

consensus_8969#0      GGTTTTGGCAAAGCCTCCATACAGTGGCCTGTTCTTACCACACCTGCTTCTTCN------ 590
consensus_8969#1      GGTTTTGGCAAAGCCTCCATACAGTGGCCTGGTCTTACCACACCTGCTTCTTCAAGTATC 313
consensus_8969#2      TGTTT-GTCAGTG-----GAACAGTAAGATCTTTGCAAC--------------------- 318
                       **** * **  *       *****    *  *   * *                     

consensus_8969#0      ------------------------------------------------------------
consensus_8969#1      AAGCAAGGTGACTACAATGAAAAATATTTTGAAAGACTGGAAATGCTTCGTAACAAATCT 373
consensus_8969#2      ------------------------------------------------------------
                                                                                  

consensus_8969#0      ------------------------------------------------------------
consensus_8969#1      GCCGTTAAAAAGAAACGTATGAGATTAGCTCCTTTACAACGTGGTTGGACAGGAAAGTTA 433
consensus_8969#2      ------------------------------------------------------------
                                                                                  

consensus_8969#0      ------------------------------------------------------------
consensus_8969#1      TTGGGAGGACAATCTGTTGGTCCGCCTACACCAAATCAATCCGATTTTGAATGTTTTGTT 493
consensus_8969#2      ------------------------------------------------------------
                                                                                  

consensus_8969#0      ------------------------------------------------------------
consensus_8969#1      ATCGAGNCAAAAGTTGTCGCAACAGTGACTGCAACATAAGGACGTTATCGGCGATTTTCA 553
consensus_8969#2      ------------------------------------------------------------
                                                                                  

consensus_8969#0      ------------------------------------
consensus_8969#1      GTTGTTGGTGCACTGGCANTGGGCAAGGGTTATGTG 589
consensus_8969#2      ------------------------------------