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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8972#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 869 fasta sequence
[GACCTTGAAGCCTCACCAACTGTTTGGTGTTAGGGATCGAACTATCTACTTTTGATTTCGGTCACCAGGTTTTTCTCAGTTCACTGCAGCGATACAGAGTTTATGCAACGCTAGTTTCGGATACACCTTGATATTTCCTGTAGATGATTCGTGCCATACTTATCATTAATAATCATGGAAAACCAAGATTAATAAAGTTTTATGAGCACTATAGTGAAGATGAACAGCAGAAAATTGTCAAAGAAGTTTTTCATCTGGTCTCGAGAAGAGATGATGATGTTTGTAATTTTTTAGAAGGCGGCACACTAGTTGGTGGACAAGATTATAGATTAATTTATCGTCATTATGCAACGTTGTATTTTGTGTTTTGTGTTGACTCATCTGAAAGTGAACTTGGCATATTGGATTTAATTCAAGTATTTGTTGAAGCATTAGATAAATGTTTTGAGAACGTTTGTGAACTTGATTTAATTTTTCATGTAGATAAGGTACACTACATACTGAATGAACTTGTATTAGGTGGAATGGTGTTAGAAACTCATATTAACGAAATCACCCATAGATATGAAGAACAACAAAAACTAGAGAAACAAGAGTCTGGACTATCCGGAGCTCCAGCTCGAGCTGTTTCAGCAATGCGTGATTTAAATCTTCATCAGAAATTCAAGGAAATACGTTTTCCAGATTTACAATCATTGCAAAACAGACTATCACGTTGACATTGTTTTTTG-TATATTTTCTTGTTGTTCTTTGTTTCATTTCATCTGTTTGTTATATATTACTT-AATTAACAATTTCATATGTGACTTTACAAAA-TATCTANTTGGCTC-TGGTCAATATTCG-TTTTTATTTCCGAAA-TATA-TTGCTGAT]
[+] EMBL CD082001 [GACCTTGAAGCCTCACCAACTGTTTGGTGTTAGGGATCGAACTATCTACTTTTGATTTCGGTCACCAGGTTTTTCTCAGTTCACTGCAGCGATACAGAGTTTATGCAACGCTAGTTTCGGATACACCTTGATATTTCCTGTAGATGATTCGTGCCATACTTATCATTAATAATCATGGAAAACCAAGATTAATAAAGTTTTATGAGCACTATAGTGAAGATGAACAGCAGAAAATTGTCAAAGAAGTTTTTCATCTGGTCTCGAGAAGAGATGATGATGTTTGTAATTTTTTAGAAGGCGGCACACTAGTTGGTGGACAAGATTATAGATTAATTTATCGTCATTATGCAACGTTGTATTTTGTGTTTTGTGTTGACTCATCTGAAAGTGAACTTGGCATATTGGATTTAATTCAAGTATTTGTTGAAGCATTAGATAAATGTTTTGAGAACGTTTGTGAACTTGATTTAATTTTTCATGTAGATAAGGTACACTACATACTGAATGAACTTGTATTAGGTGGAATGGTGTTAGAAACTCATATTAACGAAATCACCCATAGATATGAAGAACAACAAAAACTAGAGAAACCAGAGTCTGGACTATCCGGAGCTCCAGCTCGAGCTGTTTCAGCAATGCGTGATTTNAATC TCATCAGAAATTC AGGAAATACGTTNTCCAGATTTAC ATCATTGC AAACAGACTATCACGTTGACATTGGTTTTGGNNATA TTTCTTGGTGGTC TTGGTNCATTNCATCTGGTTGGTATATNATACTTAAATAAACAA TTCATATGTGACTTTACAAAA TATCTANTTGGCTC TGGTCAATATTCG TTTTTATTTCCGAAA TATA TTGCTG ]
[+] EMBL CD065475 [ aCTTTAAGCTTCACCAACTGTTTGGTGT GGATCGAACTATCTACTTTTAATTTCGGTCACCAGGTTTTTCTCAGTTCACTGCAGCGATACAGAGTTTATGCAACGCTAGTTTCGGATACACCTTGATATTTCCTGTAGATGATTCGTGCCATACTTATCATTAATAATCATGGAAAACCAAGATTAATAAAGTTTTATGAGCACTATAGTGAAGATGAACAGCAGAAAATTGTCAAAGAAGGTTTTCATCTGGTCTCGAGAAGAGATGATGATGTTTGTAATTTTTTAGAAGGCGGCACACTAGTTGGTGGACAAGATTATAGATTAATTTATCGTCATTATGCAACGTTGTATTTCGTGTTTCGTGTTGATTCATCTGAAAGTGAACTTGG ]
[+] EMBL CD065533 [ CAACTGTTTGGTGTTAGGGATCGAACTATCTACTTTTAATTTCGGTCACCAGGTTTTTCTCAGTTCACTGCAGCGATACAGAGTTTATGCAACGCTAGTTTCGGATACACCTTGATATTTCCTGTAGGTGATTCGTGCCATACTTATCATTAATAATCATGGAAAACCAAGATTAATAAAGTTTTATGAGCACTATAGTGAAGATGAACAGCAGAAAGTTGTCAAAGAAGTTTTTCATCTGGTCTCGAGAAGAGATGATGATGTTTGTAATTTTTTAGAAGGCGGCACACTAGTTGGTGGACAAGATTATAGATTAATTTATCGTCATTATGCAACGTTGTATTTTGTGTTTTGTGTTGATTCATCTGAAAGTGAACTTGGCATATTGGATTTAAT ]
[+] EMBL CD065679 [ CAAC G TTGGTGTTAGGGATCGAACTATCTACTTTTGATTTCGGTCACCAGGTTTTTCTCAGTTCACTGCAGCGATACAGAGTTCATGCAACGCTAGTTTCGGATACACCTTGATATTTCCTGTAGATGATTCGTGCCATACTTATCATTAATAATCATGGAAAACCAAGATTAATAAAGTTTTATGAGCACTATAGTGAAGATGAACAGCAGAAAATTGTCAAAGAAGTTTTTCATCTGGTCTCGAGAAGAGATGATGATGTTTGTAATTTTTTAGAAGGCGGCACACTAGTTGGTGGACAAGATTATAGATTAATTTATCGTCATTATGCAACGTTGTATTTTGTGTCTCGTGTTGACTCATCTGAAAGTGAACTTGGCA ]
[-] EMBL CD075614 [ ACTAGTTGGTGGACAAGATTATAGATTAATTTATCGTCATTATGCAACGTTGTATTTTGTGTTTTGTGTTGACTCATCTGAAAGTGAACTTGGCATATTGGATTTAATTCAAGTATTTGTTGAAGCATTAGATAAATGTTTTGAGAACGTTTGTGAACTTGATTTAATTTTTCATGTAGATAAGGTACACTACATACTGAATGAACTTGTATTAGGTGGAATGGTGTTAGAAACTCATATTAACGAAATCACCCATAGATATGAAGAACAACAAAAACTAGAGAAACAAGAGTCTGGACTATCCGGAGCTCCAGCTCGAGCTGTTTCAGCAATGCGTGATTTAAATCTTCATCAGAAATTCAAGGAAATACGTTTTCCAGATTTACAATCATTGCAAAACAGACTATCACGTTGACATTGTTTTTTG TATATTTTCTTGTTGTTCTTTGTTTCATTTCATCTGTTTGTTATATATTACTT AATTAACAATTTCATATGTGACTTTACAAAATTATCTATTTGTCTCTTGTTCAATATTCGTTTTTTATTTCCGAAATTATATTTGCTGAT]
[-] EMBL CD140351 [ TTCAAGTATTTGTTGAAGCATGAGATAAATGTTTTGAGAACGTTTGTGAACTTGATTTAATTTTTCATGTAGATAAGGTACACTACATACTGAATGAACTTGTATTAGGTGGAATGGTGTTAGAAACTCATATTAACGAAATCACCCATAGATATGAAGAACAACAAAAACTAGAGAAACAAGAGTCTGGACTATCCGGAGCTCCAGCTCGAGCTGTTTCAGCAATGCGTGATTTAAATCTTCATCAGAAATTCAAGGAAATACGTTTTCCAGATTTACAATCATTGCAAAACAGACTATCACGTTGACATTGTTTTTTG TATATTTTCTTGTTGTTCTTTGTTTCATTTCATCTGTTTGTTATATATTACTT AATTAACAATTTCATATGTGACTTTACAAAA Tta ]
consensusID : consensus_8972#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 548 fasta sequence
[CCTACCAGGCCAANAATTCGGCACGAGGGAGATGATGATGTTTGTAAATTAATCTATAATCTTGTCCACCAACTAGTATTTTGTGTTTTGTGTTGATTCATCTGAAAGTGAACTTGGCATATTGGATTTAATTCAAGTATTTGTTGAAGCATTAGATAAATGTTTTGAGAACGTTTGTGAACTTGATTTAATTTTTCATGTAGATAAGGTACACTACATACTGAATGAACTTGTATTAGGTGGAATGGTGTTAGAAACTCATATTAACGAAATCACCCATAGATATGAAGAACAACAAAAACTAGAGAAACAAGAGTCTGGACTATCCGGAGCTCCAGCTCGAGCTGTTTCAGCAATGCGTGATTTAAATCTTCATCAGAAATTCAAGGAAATACGTTTTCCAGATTTACAATCATTGCAAAACAGACTATCACGTTGACATTGTTTTTTGTATATTTTCTTGTTGTTCTTTGTTTCATTTCATCTGTTTGTTATATATTACTTAATTAACAATTTCATATGTGACTNTAAAAAAATTATCTATTTGT]
[+] EMBL CD082608 [CCTACCAGGCCAANAATTCGGCACGAGGGAGATGATGATGTTTGTAAATTAATCTATAATCTTGTCCACCAACTAGTATTTTGTGTTTTGTGTTGATTCATCTGAAAGTGAACTTGGCATATTGGATTTAATTCAAGTATTTGTTGAAGCATTAGATAAATGTTTTGAGAACGTTTGTGAACTTGATTTAATTTTTCATGTAGATAAGGTACACTACATACTGAATGAACTTGTATTAGGTGGAATGGTGTTAGAAACTCATATTAACGAAATCACCCATAGATATGAAGAACAACAAAAACTAGAGAAACAAGAGTCTGGACTATCCGGAGCTCCAGCTCGAGCTGTTTCAGCAATGCGTGATTTAAATCTTCATCAGAAATTCAAGGAAATACGTTTTCCAGATTTACAATCATTGCAAAACAGACTATCACGTTGACATTGTTTTTTGTATATTTTCTTGTTGTTCTTTGTTTCATTTCATCTGTTTGTTATATATTACTTAATTAACAATTTCATATGTGACTNTAAAAAAATTATCTATTTG ]
[-] EMBL CD076202 [ AGATGATGATGTTTGTAAATTAATCTATAATCTTGTCCACCAACTAGTATTTTGTGTTTTGTGTTGATTCATCTGAAAGTGAACTTGGCATATTGGATTTAATTCAAGTATTTGTTGAAGCATTAGATAAATGTTTTGAGAACGTTTGTGAACTTGATTTAATTTTTCATGTAGATAAGGTACACTACATACTGAATGAACTTGTATTAGGTGGAATGGTGTTAGAAACTCATATTAACGAAATCACCCATAGATATGAAGAACAACAAAAACTAGAGAAACAAGAGTCTGGACTATCCGGAGCTCCAGCTCGAGCTGTTTCAGCAATGCGTGATTTAAATCTTCATCAGAAATTCAAGGAAATACGTTTTCCAGATTTACAATCATTGCAAAACAGACTATCACGTTGACATTGTTTTTTGTATATTTTCTTGTTGTTCTTTGTTTCATTTCATCTGTTTGTTATATATTACTTAATTAACAATTTCATATGTGACTTTAAAAAAATTATCTATTTGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8972#0 GACCTTGAAGCCTCACCAACTGTTTGGTGTTAGGGATCGAACTATCTACTTTTGATTTCG 60
consensus_8972#1 ------------------------------------------------------------
consensus_8972#0 GTCACCAGGTTTTTCTCAGTTCACTGCAGCGATACAGAGTTTATGCAACGCTAGTTTCGG 120
consensus_8972#1 ------------------------------------------------------------
consensus_8972#0 ATACACCTTGATATTTCCTGTAGATGATTCGTGCCATACTTATCATTAATAATCATGGAA 180
consensus_8972#1 ------------------------------------------------------------
consensus_8972#0 AACCAAGATTAATAAAGTTTTATGAGCACTATAGTGAAGATGAACAGCAGAAAATTGTCA 240
consensus_8972#1 ------------------------------------------------------------
consensus_8972#0 AAGAAGTTTTTCATCTGGTCTCGAGAAGAGATGATGATGTTTGTAATTTTTTAGAAGGCG 300
consensus_8972#1 ---------------------------------------CCTACCAGGCCA-ANAATTCG 20
* * * ** **
consensus_8972#0 GCACACTAGTTGGTGGACAAGATTATAGATTAATTTATCGTCAT-TATGCAACGTTGTAT 359
consensus_8972#1 GCACGA-GGGAGATGATGATGTTTGTAAATTAATCTATAATCTTGTCCACCAACTAGTAT 79
**** * * ** * * ** ** ****** *** ** * * * * * ****
consensus_8972#0 TTTGTGTTTTGTGTTGACTCATCTGAAAGTGAACTTGGCATATTGGATTTAATTCAAGTA 419
consensus_8972#1 TTTGTGTTTTGTGTTGATTCATCTGAAAGTGAACTTGGCATATTGGATTTAATTCAAGTA 139
***************** ******************************************
consensus_8972#0 TTTGTTGAAGCATTAGATAAATGTTTTGAGAACGTTTGTGAACTTGATTTAATTTTTCAT 479
consensus_8972#1 TTTGTTGAAGCATTAGATAAATGTTTTGAGAACGTTTGTGAACTTGATTTAATTTTTCAT 199
************************************************************
consensus_8972#0 GTAGATAAGGTACACTACATACTGAATGAACTTGTATTAGGTGGAATGGTGTTAGAAACT 539
consensus_8972#1 GTAGATAAGGTACACTACATACTGAATGAACTTGTATTAGGTGGAATGGTGTTAGAAACT 259
************************************************************
consensus_8972#0 CATATTAACGAAATCACCCATAGATATGAAGAACAACAAAAACTAGAGAAACAAGAGTCT 599
consensus_8972#1 CATATTAACGAAATCACCCATAGATATGAAGAACAACAAAAACTAGAGAAACAAGAGTCT 319
************************************************************
consensus_8972#0 GGACTATCCGGAGCTCCAGCTCGAGCTGTTTCAGCAATGCGTGATTTAAATCTTCATCAG 659
consensus_8972#1 GGACTATCCGGAGCTCCAGCTCGAGCTGTTTCAGCAATGCGTGATTTAAATCTTCATCAG 379
************************************************************
consensus_8972#0 AAATTCAAGGAAATACGTTTTCCAGATTTACAATCATTGCAAAACAGACTATCACGTTGA 719
consensus_8972#1 AAATTCAAGGAAATACGTTTTCCAGATTTACAATCATTGCAAAACAGACTATCACGTTGA 439
************************************************************
consensus_8972#0 CATTGTTTTTTGTATATTTTCTTGTTGTTCTTTGTTTCATTTCATCTGTTTGTTATATAT 779
consensus_8972#1 CATTGTTTTTTGTATATTTTCTTGTTGTTCTTTGTTTCATTTCATCTGTTTGTTATATAT 499
************************************************************
consensus_8972#0 TACTTAATTAACAATTTCATATGTGACTTTACAAAA--TATCTANTTGGCTCTGGTCAAT 837
consensus_8972#1 TACTTAATTAACAATTTCATATGTGACTNTAAAAAAATTATCTATTTGT----------- 548
**************************** ** **** ****** ***
consensus_8972#0 ATTCGTTTTTATTTCCGAAATATATTGCTGAT 869
consensus_8972#1 --------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||