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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8973#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 648 fasta sequence
[TTTCAGGGTCGCTTTACTAGGATTACTGCATTTCGTAACCAGGTGACTTGGTTGACTTTCAAAAAGCCTTGATTAAGTAGCTAAATAATGCCTGGTTACAAACAAGAAATGCCTCCTCCCGGAGGTTTCGCTCCAATCGATGTCTCCAGAAAGATGCCAAAAGGCTATGTACACGGTCTTATAACACTTGGTGCATTGTATACCTCAACATATGTGGGCCTTAAAGTTCTGAAATATATGAAAGGAAAACAAACTAAAATTAATAGAGAAGATCAAGAATGTCGGATTGCTCTTGCTCCTTTCATTATAGCTGAACAAGAGCGATTATACTTGAAACAATTACGAAAAAACCGCGAATACGAACAGAATTTAATGGGTGATGTTGCAGGCTGGAAAATTGGTCATTGGTTTGACTACCCGGTTTATCATAACCCTCGAGGTTTATGGTGTGATCCGGATATTAATGAGTTCTATGCTCATGTTGCTGATTGCGATAAAGATTTGAGGCGTAAAGTCCGATATCGTTACTCTTAAGTTGTGCTGGTGGCGGGTGTTTGGAAGCACTTCTTATTTTTAAAGGACTGATAATTTGAATTGTAGTTAAATATGTACTAGATCAAATACAAATTTACTGTTGAGACCATTGCT]
[-] EMBL CD155617 [TTTCAGGGTCGCTTTACTAGGATTACTGCATTTCGTAACCAGGTGACTTGGTTGACTTTCAAAAAGCCTTGATTAAGTAGCTAAATAATGCCTGGTTACAAACAAGAAATGCCTCCTCCCG ]
[+] EMBL CD083495 [ cgAGGCTTGATTAAGTAGCTAAATAATGCCTGGTTACAAACAAGAAATGCCTCCTCCCGGAGGTTTCGCTCCAATCGATGTCTCCAGAAAGATGCCAAAAGGCTATGTACACGGTCTTATAACACTTGGTGCATTGTATACCTCAACATATGTGGGCCTTAAAGTTCTGAAATATATGAAAGGAAAACAAACTAAAATTAATAGAGAAGATCAAGAATGTCGGATTGCTCTTGCTCCTTTCATTATAGCTGAACAAGAGCGATTATACTTGAAACAATTACGAAAAAACCGCGAATACGAACAGAATTTAATGGGTGATGTTGCAGGCTGGAAAATTGGTCATTGGTTTGACTACCCGGTTTATCATAACCCTCGAGGTTTATGGTGTGATCCGGATATNTATGAGTTCTATGCTCATGTTGCTGATTGCGATAAAGACTTGAGGCGTAAAGT ]
[-] EMBL CD146059 [ ATGTACACGGTCTTATAACACTTGGTGCATTGTATACCTCAACATATGTGGGCCTTAAAGTTCTGAAATATATGAAAGGAAAACAAACTAAAATTAATAGAGAAGATCAAGAATGTCGGATTGCTCTTGCTTCTTTCATTATAGCTGAACAAGAGCGATTATACTTGAAACAATTACGAAAAAACCGCGAATACGAACAGAATTTAATGGGTGATGTTGCAGGCTGGAAAATTGGTCATTGGTTTGACTACCCGGTTTATCATAACCCTCGAGGTTTATGGTGTGATCCGGATATTAATGAGTTCTATGCTCATGTTGCTGATTGCGATAAAGATTTGAGGCGTAAAGTCCGATATCGTTACTCTTAAGTTGTGCTGGTGGCGGG ]
[-] EMBL CD144418 [ TATATGAAAGGAAAACAAACTAAAATTNATAGAGAAGATCAAGAATGTCGGATTGCTCTNGCTCCTTTCATNATAGCTGAACAAGAGCGATTATACTTGAAACAATTACGAAAAAACCGCGAATACGAACAGAATNTAATGGGTGATGTTGCAGGCTGGAAAATTGGTCATTGGTTTGACTACCCGGTTTATCATAACCCTCGAGGTTTATGGTGTGATCCGGATATTAATGAGTTCTATGCTCATGTTGCTGATTGCGATAAAGATTTGAGGCGTAAAGTCCGATATCGTTACTCTTA ]
[+] EMBL CD169626 [ CAGGCTGGAAAATTGGTCATTGGTTTGACTACCCGGTTTATCATAACCCTCGAGGTTTATGGTGTGATCCGGATATTAATGAGTTCTATGCTCATGTTGCTGATTGCGATAAAGATTTGAGGCGTAAAGTCCGATATCGTTACTCTTAAGTTGTGCTGGTGGCGGGTGTTTGGAAGCACTTCTTATTTTTAAAGGACTGATAATTTGAATTGTAGTTAAATATGTACTAGATCAAATACAAATTTACTGTTGAGACCATTGCT]
consensusID : consensus_8973#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 254 fasta sequence
[GACGTCTGATTTCAGGGTCGCTTTACTAGGATTACTGTAATCAGACTTTACATACTGACTTTTTGTTTGTTGACAAAAACAGACTTAAGGCATATGAATTCAGTGTAACACCTGGCATTTCGTAACCAGGTGACTTGGTTGACTTTCAAAAAGCCTTGATTAAGTAGCTAAATAATGCCTGGTTACAAACAAGAAATGCCTCCTCCCGGGGGTTTCGCTCCAATCGATGTCTCCAGAAAGATGCCAAAAGGCTA]
[+] EMBL CD134373 [GACGTCTGATTT AGGGTCGCTTTACTAGGATTACTGTAATCAGACTTTACATACTGACTTTTTGTTTGTTGACAAAAACAGACTTAAGGCATATGAATTCAGTGTAACACCTGGCATTTCGTAACCAGGTGACTTGGTTGACTTTCAAAAAGCCTTGATTAAGTAGCTAAATAATGCCTGGTTACAAACAAGAAATGCCTCCTCCCGGGGGTTTCGCTCCAATCGATGTCTCCAGAAAGATGCCAAAAGGCTA]
[+] EMBL CD137925 [ CGTCTGATTTCAGGGTCGCTTTACTAGGATTACTGTAATCAGACTTTACATACTGACTTTTTGTTTGTTGACAAAAACAGACTTAAGGCATATGAATTCAGTGTAACACCTGGCATTTCGTAACCAGGTGACTTGGTTGACTTTCAAA ]
[+] EMBL CD138021 [ CGTCTGATTTCAGGGTCGCTTTACTAGGATTACTGTAATCAGACTTTACATACTGACTTTTTGTTTGTTGACAAAAACAGACTTAAGGCATATGAATTCAGTGTAACACCTGGCATTTCGTAACCAGGTGACTTGGTTGACTTTCAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8973#0 ------------------------------------------------------------
consensus_8973#1 GACGTCTGATTTCAGGGTCGCTTTACTAGGATTACTGTAATCAGACTTTACATACTGACT 60
consensus_8973#0 -----------------------TTTCAGG---GTCGCTTTACTAGGATTACTG-CATTT 33
consensus_8973#1 TTTTGTTTGTTGACAAAAACAGACTTAAGGCATATGAATTCAGTGTAACACCTGGCATTT 120
** *** * ** * * * *** *****
consensus_8973#0 CGTAACCAGGTGACTTGGTTGACTTTCAAAAAGCCTTGATTAAGTAGCTAAATAATGCCT 93
consensus_8973#1 CGTAACCAGGTGACTTGGTTGACTTTCAAAAAGCCTTGATTAAGTAGCTAAATAATGCCT 180
************************************************************
consensus_8973#0 GGTTACAAACAAGAAATGCCTCCTCCCGGAGGTTTCGCTCCAATCGATGTCTCCAGAAAG 153
consensus_8973#1 GGTTACAAACAAGAAATGCCTCCTCCCGGGGGTTTCGCTCCAATCGATGTCTCCAGAAAG 240
***************************** ******************************
consensus_8973#0 ATGCCAAAAGGCTATGTACACGGTCTTATAACACTTGGTGCATTGTATACCTCAACATAT 213
consensus_8973#1 ATGCCAAAAGGCTA---------------------------------------------- 254
**************
consensus_8973#0 GTGGGCCTTAAAGTTCTGAAATATATGAAAGGAAAACAAACTAAAATTAATAGAGAAGAT 273
consensus_8973#1 ------------------------------------------------------------
consensus_8973#0 CAAGAATGTCGGATTGCTCTTGCTCCTTTCATTATAGCTGAACAAGAGCGATTATACTTG 333
consensus_8973#1 ------------------------------------------------------------
consensus_8973#0 AAACAATTACGAAAAAACCGCGAATACGAACAGAATTTAATGGGTGATGTTGCAGGCTGG 393
consensus_8973#1 ------------------------------------------------------------
consensus_8973#0 AAAATTGGTCATTGGTTTGACTACCCGGTTTATCATAACCCTCGAGGTTTATGGTGTGAT 453
consensus_8973#1 ------------------------------------------------------------
consensus_8973#0 CCGGATATTAATGAGTTCTATGCTCATGTTGCTGATTGCGATAAAGATTTGAGGCGTAAA 513
consensus_8973#1 ------------------------------------------------------------
consensus_8973#0 GTCCGATATCGTTACTCTTAAGTTGTGCTGGTGGCGGGTGTTTGGAAGCACTTCTTATTT 573
consensus_8973#1 ------------------------------------------------------------
consensus_8973#0 TTAAAGGACTGATAATTTGAATTGTAGTTAAATATGTACTAGATCAAATACAAATTTACT 633
consensus_8973#1 ------------------------------------------------------------
consensus_8973#0 GTTGAGACCATTGCT 648
consensus_8973#1 ---------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||