|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8975#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 719 fasta sequence
[CAACAGACATGAAAAGAATGAACAAAGATTGGATAGAACTAGAAAGAAAGGCGCAGCCAGGACAGAGTGGGTTGGAGAATGCTGGTCGGTGGCCTGTGCTCCATTGGGAGTAACAGGCATAAGTAATTATTATCGTGGTGCAGTTGGTGCTATCCTAGTTTATGATATATCAAAACCGCATACATTTTTAAATTTAAATAAATGGTTAGAAGAATTAAAAGAATATGCTTCAGATGATGTTATCATTATGTTAATTGGAAATAAATGTGATTTAAAACATTTACGTTGTGTATTAACAGAAGATGCTACAAGATATGCTAAACAACAAGGTATATCATTTATGGAAACATCAGCATTAGATTCAATTAATGTTGAAGAAGCATTTAATCAAACAATAAGAGATATATATTATCTGATTAGTAAACATCCATCATTTAATATGAATGAAACCAATATAATACCAACCAATAATTTACCTATACAAGAACCAAATATAAAACAATCAGCAAAAAGAAAATTTTGTTGTACATAGAAAGGAATGTAAAGTATACATATCTGAATTTCTTTGCTATTTTTTTTTCTTTTTTTTTATACCCCCCCCTTTGATCACTATAATTNTTTTCTTTTTTTTTCATGACCCCCTTTGATCATTNTTTTTCTTTTTTTGGTTTTGTCTATTTACTTTCCTCGTAAACAATAATTATAAAAATGGAAATGTA]
[+] EMBL CD079791 [CAACAGACATGAAAAGAATGAACAAAGATTGGATAGAACTAGAAAGAAAGGCGCAGCCAGGACAGAGTGGGTTGGAGAATGCTGGTCGGTGGCCTGTGCTCCATTGGGAGTAACAGGCATAAGTAATTATTATCGTGGTGCAGTTGGTGCTATCCTAGTTTATGATATATCAAAACCGCATACATTTTTAAATTTAAATAAATGGTTAGAAGAATTAAAAGAATATGCTTCAGATGATGTTATCATTATGTTAATTGGAAATAAATGTGATTTAAAACATTTACGTTGTGTATTAACAGAAGATGCTACAAGATATGCTAAACAACAAGGTATATCATTTATGGAAACATCAGCATTAGATTCAATTAATGTTGAAGAAGCATTTAATCAAACAATAAGAGATATATATTATCTGATTAGTAAACATCCATCATTTAATATGAATGAAACCAATATAATACCAACCAATAATTTACCTATACAAGAACCAAATATAAAACAATCAGCAAAAAGAAAATTTTGTTGTACATAGAAAGGAATGTAAAGTATACATATCTGAATTTCTTTGCTATTTTTTTTTCTTTTTTTTTATACCCCCCCCTTTGATCACTATAATTNTTTTCTTTTTTTTTCATGACCCCCTTTGATCATTNTTTTTCTTTTTTTGGTTTTGTCTATTTACTTTCCTCGTAAACAATAATTATAAAAATGGAAATGTA]
consensusID : consensus_8975#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 631 fasta sequence
[ACTCTGTCCTGGGCCTTCCTTTCTAGTTCTATCCAATTTTTGTTCATTCTTCTCATGTCTGTCTCCATTTCTCGGCGTAATGTGTTCTTTAGTCTTCTTCTTTTCCTTTGGCCTTCAANATTCCATGTGAGTTCTTGTCTTGTGACTCAGTTGTGTGATTTCCTCAAAGTGCGCCCAATCCACTTCCAGTGCTTCTTCCTGATTTCTTCCTCCGCTGAAATCTGGTTTGTTCTCTCCCACAATANAATGTTTTTGATAATGTCTGGCCAACGGATCCGAAGTATTTTGCGTANACAACTGTTAATAAAGGAGGGGGGAATTGGATCAAATTACTTCATATTCATTTTATAAAGTGGGTAAATCTTTTGATTTATAACATCAAAATAACAAAGTATTATAGAAATGTGCAAAAAGAGAACTTATGAATTATTTATTAAGATTTCGATTTTAATTGGCAAGATGTTTTTTCCTTCTGTAAAATAATAAAGAAAAAAAGAAATCCATTGTATTCAATAGACAGTTTTGTTCAGTCACTTAAAAACAATTATAGTAATATATCCAATACTCAATAAATAACTTTGTATATAATCATGTATACGAATGATTTTACTATTTTGAATAAACAAATTTT]
[+] EMBL AI110923 [ACTCTGTCCTGGGCCTTCCTTTCTAGTTCTATCCAATTTTTGTTCATTCTTCTCATGTCTGTCTCCATTTCTCGGCGTAATGTGTTCTTTAGTCTTCTTCTTTTCCTTTGGCCTTCAANATTCCATGTGAGTTCTTGTCTTGTGACTCAGTTGTGTGATTTCCTCAAAGTGCGCCCAATCCACTTCCAGTGCTTCTTCCTGATTTCTTCCTCCGCTGAAATCTGGTTTGTTCTCTCCCACAATANAATGTTTTTGATAATGTCTGGCCAACGGATCCGAAGTATTTTGCGTANACAACTGTTAATAAAGGAGGGGGGAATTGGATCAAATTACTTCATATTCATTTTATAAAGTGGGTAAATCTTTTGATTTATAACATCAAA ]
[-] EMBL CD076300 [ CTTNTCCTTTGGCCTTCAAGATTCCATGTGAGTTCTTGTCTTGTGACTCAGTTGTGTGATTTCCTCAAAGTGCGCCCAATCCACTTCCAGTGCTTCTTCCTGATTTCTTCCTCCGCTGAAATCTGGTTTGTTCTCTCCCACAATAGAATGTTTTTGATAATGTCTGGCCAACGGATCCGAAGTATTTTGCGTAGACAACTGTTAATAAAGGAGGGGGGAATTGGATCAAATTACTTCATATTCATTTTATAAAGTGGGTAAATCTTTTGATTTATAACATCAAAATAACAAAGTATTATAGAAATGTGCAAAAAGAGAACTTATGAATTATTTATTAAGATTTCGATTTTAATTGGCAAGATGTTTTTTCCTTCTGTAAAATAATAAAGAAAAAAAGAAATCCATTGTATTCAATAGACAGTTTTGTTCAGTCACTTAAAAACAATTATAGTAATATATCCAATACTCAATAAATAACTTTGTATATAATCATGTATACGAATGATTTTACTATTTTGAATAAACAAATTTT]
consensusID : consensus_8975#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 461 fasta sequence
[CTCTATCCATCTATCATACCCATGTCTATAGTCCCGAACATACACTTTCGCACCAACTTTGTAAGGAATTCTAGTGTTCTGCATTCGAGGATTCTGCCGGGTTACTCGCCTGGGTGCCATCGCACTATGGACTGTTCGTAGCTTCCAACCAGGCTGGAGGAGTTTGATGAATCGATTTTGGAGGTCTGCAGCATGCTGTTGTGTAGTAGCAAGAGTTTTTACTTGATTACAGATAGTGCTGATAAGTAGATTGGCAAGGACAAATTCTTTCAACCCATCTAAACCCAAAAGAATGAGAGGGGATTTGGTGATGGTACACGTACCAATGGAGGGTGTACCTTTTGACCAAATACCACAAGTTAAGTCAACCATGGAGGCCGAGATTGACAACACATGCACTATACGGGTTTCTTGCAAAAATTGGTTGAATTGGAAGGTTAACCCANGGGTCGGCCAAGGTT]
[+] EMBL CD162264 [CTCTATCCATCTATCATACCCATGTCTATAGTCCCGAACATACACTTTCGCACCAACTTTGTAAGGAATTCTAGTGTTCTGCATTCGAGGATTCTGCCGGGTTACTCGCCTGGGTGCCATCGCACTATGGACTGTTCGTAGCTTCCAACCAGGCTGGAGGAGTTTGATGAATCGATTTTGGAGGTCTGCAGCATGCTGTTGTGTAGTAGCAAGAGTTTTTACTTGATTACAGATAGTGCTGATAAGTAGATTGGCAAGGACAAATTCTTTCAACCCATCTAAACCCAAAAGAATGAGAGGGGATTTGGTGATGGTACACGTACCAATGGAGGGTGTACCTTTTGACCAAATACCACAAGTTAAGTCAACCATGGAGGCCGAGATTGACAACACATGCACTATACGGGTTTCTTGCAAAAATTGGTTGAATTGGAAGGTTAACCCANGGGTCGGCCAAGGTT]
consensusID : consensus_8975#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 413 fasta sequence
[TGGTACTGATGACTGTCACAAAGATAATTCGAAACTCACTGATTGATTCCCCGCGGTGTCCGAGTCACCAGGTTGTCTGCAATGTCTGGATCAACAATCCGTACTAATTCGTCTTCTTAAAATTGGGTGTATGGTCCAAAAGTGATATAGTGCAATAGTAACCCCTGATTTGACTGTTGAACGGAAGGCAGAAAAGCGTGGAATTTATTCTGAGTCTGATAAAACGGATGGTACTATGGATGACTGGGACATAAATAAATTAGAAGAAGTGATTAGCAAAAAGCATGATGCTGATAACAAAGGGTTACCACCCAGTACTATAGTATGTAAGTACTTCATTGAAGCAGTGGAACATTTCAAGTATGGTTGGTTTAGGGAGTGTCCGAATGGAAAGACATGTCATTACAGACATT]
[+] EMBL CD153557 [TGGTACTGATGACTGTCACAAAGATAATTCGAAACTCACTGATTGATTCCCCGCGGTGTCCGAGTCACCAGGTTGTCTGCAATGTCTGGATCAACAATCCGTACTAATTCGTCTTCTTAAAATTGGGTGTATGGTCCAAAAGTGATATAGTGCAATAGTAACCCCTGATTTGACTGTTGAACGGAAGGCAGAAAAGCGTGGAATTTATTCTGAGTCTGATAAAACGGATGGTACTATGGATGACTGGGACATAAATAAATTAGAAGAAGTGATTAGCAAAAAGCATGATGCTGATAACAAAGGGTTACCACCCAGTACTATAGTATGTAAGTACTTCATTGAAGCAGTGGAACATTTCAAGTATGGTTGGTTTAGGGAGTGTCCGAATGGAAAGACATGTCATTACAGACATT]
consensusID : consensus_8975#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 353 fasta sequence
[AACAGTGCCACCCCTGAATTTAAGCCAGCTGAAAGTACTCCGGAGGAAGCAGAGACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCGCCTAGTGGGCACTGTTTGGACTCTGAATCGAATTCCCGACGCCGCCATGGAGACTAAGGACTATATTCTATGCCCCATATCGCCGTATGTAGGCGGTATTACATTTCAGAGGCGGCGTTTCAACCAACTTTGGGATATACCTGGATGGTACTTGTCCATGTTGATCGATGATGATGTTCAGACTGCATTCCTCGCCTCCAGGAGTTGCGAGTTTCCTACTCGCCTGCCGGGCTTACGGCCACGCACTCCTTGTCTTT]
[+] EMBL CD141218 [AACAGTGCCACCCCTGAATTTAAGCCAGCTGAAAGTACTCCGGAGGAAGCAGAGACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCGCCTAGTGGGCACTGTTTGGACTCTGAATCGAATTCCCGACGCCGCCATGGAGACTAAGGACTATATTCTATGCCCCATATCGCCGTATGTAGGCGGTATTACATTTCAGAGGCGGCGTTTCAACCAACTTTGGGATATACCTGGATGGTACTTGTCCATGTTGATCGATGATGATGTTCAGACTGCATTCCTCGCCTCCAGGAGTTGCGAGTTTCCTACTCGCCTGCCGGGCTTACGGCCACGCACTCCTTGTCTTT]
consensusID : consensus_8975#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 194 fasta sequence
[TTAGAGAATGTGAAGGCCAAAGATCCAAGATAAAGAAGGGATTCCACCATGATCACCACCGTCTGATCTTTGCTGGTAACGAGCTAGAAGATGGTCACGCACATTGTCTGATTACAATATTCAGAAGAGTCCACTCTTCACTTGGTGTTCGCTGTCGTGAGTACTTATTTGCTATTACTATAACGTTATTACTA]
[+] EMBL AA791355 [TTAGAGAATGTGAAGGCCAAAGATCCAAGATAAAGAAGGGATTCCACCATGATCACCACCGTCTGATCTTTGCTGGTAACGAGCTAGAAGATGGTCACGCACATTGTCTGATTACAATATTCAGAAGAGTCCACTCTTCACTTGGTGTTCGCTGTCGTGAGTACTTATTTGCTATTACTATAACGTTATTACTA]
consensusID : consensus_8975#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 98 fasta sequence
[TTGGTACAACATATTCGTGTGTTGGTGTTTTCCAGCATGGTAAAGTGGATATTTTGAAAATCCCAATAACTGTTGTTTCAGTGGATATAATGAAGCGT]
[+] EMBL CD115151 [TTGGTACAACATATTCGTGTGTTGGTGTTTTCCAGCATGGTAAAGTGGATATTTTGAAAATCCCAATAACTGTTGTTTCAGTGGATATAATGAAGCGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8975#0 CAACAGACATGAAAAGAATGAACAAAGATTGGATAGAACTAGAAAGAAAGGCGCAGCCAG 60
consensus_8975#1 ------------------------------------------------------------
consensus_8975#6 ------------------------------------------------------------
consensus_8975#5 ------------------------------------------------------------
consensus_8975#2 ------------------------------------------------------------
consensus_8975#4 ------------------------------------------------------------
consensus_8975#3 ------------------------------------------------------------
consensus_8975#0 GACAGAGTGGGTTGGAGAATGCTGGTCGGTGGCCTGTGCTCCATTGGGAGTAACAGGCAT 120
consensus_8975#1 ------------------ACTCTGTCCTGGGCCTTCCTTTCTAGTTCTATC--CAATTTT 40
consensus_8975#6 ------------------------------------------------------------
consensus_8975#5 ------------------------------------------------------------
consensus_8975#2 ------------------------------------------------------------
consensus_8975#4 ------------------------------------------------------------
consensus_8975#3 ------------------------------------------------------------
consensus_8975#0 AAGTAATTATTATCGTGGTGCAGTTGGTGCTATCCTAGTTTATGATATATCAAAACCGCA 180
consensus_8975#1 TGTTCATTCTTCTCATG--TCTGTCTCCATT-TCTCGGCGTAATGTGTTCTTTAGTCTTC 97
consensus_8975#6 ------------------------------------------------------------
consensus_8975#5 ------------------------------------------------------------
consensus_8975#2 ------------------------------------------------------------
consensus_8975#4 ------------------------------------------------------------
consensus_8975#3 ------------------------------------------------------------
consensus_8975#0 TACATTTTTAAATTTAAATAAATGGTTAGAAGAATTAAAAGAATATGCTTCAGATGATGT 240
consensus_8975#1 TTCTTTTCCTTTGGCCTTCAANATTCCATGTGAGTTCTTGTCTTGTGACTCAGTTG---- 153
consensus_8975#6 ------------------------------------------------------------
consensus_8975#5 ------------------------------------------------------------
consensus_8975#2 -----------------------------------------------------------C 1
consensus_8975#4 ------------------------------------------------------------
consensus_8975#3 ------TGGTACTGATGACTGTCACAAAGATAATTCGAAACTCACTGATTGATTCCCCGC 54
consensus_8975#0 TATCATTATGTTAATTGGAAATAAATGTGATTTAAAACATTTACGTTGTGTATTAACAGA 300
consensus_8975#1 TGTGATTTCCTCAAAGTGCGCCCAAT-CCACTTCCAGTGCTTCTTCCTGATTTCTTCCTC 212
consensus_8975#6 ------------------------------------------------------------
consensus_8975#5 ----------------------------------------------------TTAGAGAA 8
consensus_8975#2 TCTATCCATCTATCATACCCATGTCTATAGTCCCGAACATACACTTTCGCACCAACTTTG 61
consensus_8975#4 -------------------AACAGTGCCACCCCTGAATTTAAGCCAGCTGAAAGTACTCC 41
consensus_8975#3 GGTGTCCGAGTCACCAGGTTGTCTGCAATGTCTGGATCAACAATCCGTACTAATTCGTCT 114
consensus_8975#0 AGATGCTACAAGATATGCTAAACAACAAGGTATATCATTTATGGAAACATCAG--CATTA 358
consensus_8975#1 CGCTGAAATCTGGTTTGTTCTCTCCCACAATANAATGTTTTTGATAATGTCTGGCCAACG 272
consensus_8975#6 ----------------------------------------------------------TT 2
consensus_8975#5 TGTGAAGGCCAAAGATCCAAGATAAAGAAGGGATTCCACCATGATCACCACCGTCTGATC 68
consensus_8975#2 TAAGGAATTCTAGTGTTCTGCATTCGAGGATTCTGCCGGGTTACTCGCCTGGGTGCCATC 121
consensus_8975#4 GGAGGAAGCAGAGACAACAGCATCATAATGCGAGGTACAGCCCTTAACCACAGCGCCTAG 101
consensus_8975#3 TCTTAAAATTGGGTGTATGGTCCAAAAGTGATATAGTGCAATAGTAACCCCTGATTTGAC 174
consensus_8975#0 GATTCAATTAATGT-TG-AAGAAGCATTTAATCAAACAATAAGAGATATATATTATCTGA 416
consensus_8975#1 GATCCGAAGTATTT-TG-CGTANACAACTG-TTAATAAAGGAGGGGGGAATTGGATCAAA 329
consensus_8975#6 GGTACAACATATTCGTG-TGTTGGTGTTT--TCCAGCATGGTAAAGTGGATATTTTGAAA 59
consensus_8975#5 TTTGCTGGTAACGAGCT-AGAAGATGGTCA--CGCACATTGTCTGATTACAATATTCAGA 125
consensus_8975#2 GCACTATGGACTGTTCGTAGCTTCCAACCAGGCTGGAGGAGTTTGATGAATCGATTTTGG 181
consensus_8975#4 TGGGCACTGTTTGGACTCTGAATCGAATTCCCGACGCCGCCATGGAGACTAAGGACTATA 161
consensus_8975#3 TGTTGAACGGAAGGCAGAAAAGCGTGGAAT-TTATTCTGAGTCTGATAAAACGGATGGTA 233
consensus_8975#0 TTAGTAAACATCCATCATTTAATATGAATGAAACCAATATAATACCAACCAATAATTTAC 476
consensus_8975#1 TTACTTCATATTCATTTTATAAAGTGGGTAAATC--------TTTTGATTTATAA--CAT 379
consensus_8975#6 AT-CCCAATAACTGTTGTTTCA-GTGGATATAATGAAGCGT------------------- 98
consensus_8975#5 AGAGTC--CACTCTTCACTTGGTGTTCGCTGTCGTGAGTACTTATTTGCTATTACTATAA 183
consensus_8975#2 AGGTCTGCAGCATGCTGTTGTGTAGTAGCAAGAGTTTTTACTTGATTACAGATAGTGCTG 241
consensus_8975#4 TTCTATGCCCCATATCGCCGTATGTAGGCGGTATTA--CATTTCAGAGGCGGCGTTTCAA 219
consensus_8975#3 CT-ATGGATGACTGGGACATAA-ATAAATTAGAAGAAGTGATTAGCAAAAAGCATGATGC 291
consensus_8975#0 CTATACAAGAACCAAATATAAAACAATCAGCAAAAAGAAAATTT-TGTTGTACATAGAAA 535
consensus_8975#1 CAAAATAACAAAGTATTATAGAA--ATGTGCAAAAAGAGAACTTATGAATTATTTATTAA 437
consensus_8975#6 ------------------------------------------------------------
consensus_8975#5 CGTTATTACTA------------------------------------------------- 194
consensus_8975#2 ATAAGTAGATTGGCAAGGACAAATTCTTTCAACCCATCTAAACCCAAAAGAATGAGAGGG 301
consensus_8975#4 CCAACTTTGGGATATACCTGGATGGTACTTGTCCATGTTGATCGATGATGATGTTCAGAC 279
consensus_8975#3 TGATAACAAAGGGTTACCACCCAGTACTATAGTATGTAAGTACTTCATTGAAGCAGTGGA 351
consensus_8975#0 GGAATGTAAAGTATACATATCTGAATTTCTTTGCTATTTTTTTTTCTTTTTTTTTATACC 595
consensus_8975#1 G--ATTTCGATTTTAATTGGCAAGATGTTTTTTCCTTCTGTAAAATAATAAAGAAAAAAA 495
consensus_8975#6 ------------------------------------------------------------
consensus_8975#5 ------------------------------------------------------------
consensus_8975#2 GATTTGGTGATGGTACACGTACCAATGGAGGGTGTACCTTTTGACCAAATACCACAAGTT 361
consensus_8975#4 TGCATTCCTCGCCTCCAGGAGTTGCGAGTTTCCTACTCGCCTGCCGGGCTTACGGCCACG 339
consensus_8975#3 ACATTTCAAGTATGGTTGGTTTAGGGAGTGTCCGAATGGAAAGACATGTCATTACAGACA 411
consensus_8975#0 C---CCCCCTTTGATCACTATAATTNTTTTCTTTTTTTTTCATGACCCCCTTTGATCAT- 651
consensus_8975#1 GAAATCCATTGTATTCAATAGACAGTTTTGTTCAGTCACTTAAAAACAATTATAGTAATA 555
consensus_8975#6 ------------------------------------------------------------
consensus_8975#5 ------------------------------------------------------------
consensus_8975#2 AAG-TCAACCATGGAGGCCGAGATTGACAACACATGCACTATACGGGTTTCTTGCAAAAA 420
consensus_8975#4 CACTCCTTGTCTTT---------------------------------------------- 353
consensus_8975#3 TT---------------------------------------------------------- 413
consensus_8975#0 TNTTTTTCTTTTTTTGGTTTTGTCTATTTACTTTCCTCGTAAAC-AATAATTATAAAAAT 710
consensus_8975#1 TATCCAATACTCAATAAATAACTTTGTATATAATCAT-GTATACGAATGATTTTACTATT 614
consensus_8975#6 ------------------------------------------------------------
consensus_8975#5 ------------------------------------------------------------
consensus_8975#2 TTGGTTGAATTGGAAGGTTAACCCANGGGTCGGCCAAGGTT------------------- 461
consensus_8975#4 ------------------------------------------------------------
consensus_8975#3 ------------------------------------------------------------
consensus_8975#0 GGAAATGTA-------- 719
consensus_8975#1 TTGAATAAACAAATTTT 631
consensus_8975#6 -----------------
consensus_8975#5 -----------------
consensus_8975#2 -----------------
consensus_8975#4 -----------------
consensus_8975#3 -----------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||