cluster # 8978

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 8978 cluster # 8978 Sequences # 8 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8978#0 length = 626 sequences # 4

consensus_8978#1 length = 560 sequences # 3
consensus_8978#2 length = 517 sequences # 1

consensusID : consensus_8978#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 626
fasta sequence

                              [CGTGGGCACTCCAATTGAAGAGTTTGATCCTGGCTCAGCCTGAACGCTGGCGGCGTGGCTAAGACATGCAAGTCGTACGGGGCCCGCAAGGGCCCAGTGGCGGACGGGTGAGTAATGAATCGCTAACGTGCCCCGATCCCTGGGATAGCCGGCCGAAAGGCCGGGTAATACCAGATGACGTGACCGCAGGGCATCCTGTGGTCCCCAAAGGGAAACCGGTCCGGGAGCGGGCGATTTCGTATCAGCTAGTTGGTGGGGTAACGGCCCACCAAGGCGACGACGCGTAGCTGGTCTGAGAGGACGGCCAGCCACATTGGGACTGAGACACTGCCCAGACTCCTACGGGGGGCTGCAGTAACGAATCTTCCGCAATGCGCGCAAGCGTGACGGAGCGACGCCGCGTGGAGGTTAAGTCCTTCGGGATGTAAACTCCTGTCAGGGGTTACCAAGTTCTGAGGAGCCCCAGAGGAAGGCACGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGTGCCGAGCGTTAGGCGGAATCACTGGGCTTAAAGCGCGTGTAGGCGGGTCGTTAAGTGTCCGCGTGAAATCCCACGGCTCAACCGTGGAACTGCCGGGCATACTGGCGACCTT]

[+] EMBL CD164413             [CGTGGGCACTCCAATTGAAGAGTTTGATCCTGGCTCAGCCTGAACGCTGGCGGCGTGGCTAAGACATGCAAGTCGTACGGGGCCCGCAAGGGCCCAGTGGCGGACGGGTGAGTAATGAATCGCTAACGTGCCCCGATCCCTGGGATAGCCGGCCGAAAGGCCGGGTAATACCAGATGACGTGACCGCAGGGCATCCTGTGGTCCCCAAAGGGAAACCGGTCCGGGAGCGGGCGATTTCGTATCAGCTAGTTGGTGGGGTAACGGCCCACCAAGGCGACGACGCGTAGCTGGTCTGAGAGGACGGCCAGCCACATTGGGACTGAGACACTGCCCAGACTCCTACGGGGGGCTGCAGTAACGAATCTTCCGCAATGCGCGCAAGCGTGACGGAGCGACGCCGCGTGGAGGTTAAGTCCTTCGGGATGTAAACTCCTGTCAGGGGTTACCAAGTTCTGAGGAGCCCCAGAGGAAGGCACGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGTGCCGAGCGTTAGGCGGAATCACTGGGCTTAAAGCGCGTGTAGGCGGGTCGTTAAGTGTCCGCGTGAAATCCCACGGCTCAACCGTGGAACTGCCGGGCATACTGGCGACCTT]
[+] EMBL CD164403             [ GTGGGCACTCCAATTGAAGAGTTTGATCCTGGCTCAGCCTGAACGCTGGCGGCGTGGCTAAGACATGCAAGTCGTACGGGGCCCGCAAGGGCCCAGTGGCGGACGGGTGAGTAATGAATCGCTAACGTGCCCCGATCCCTGGGATAGCCGGCCGAAAGGCCGGGTAATACCAGATAACGTGACCGCAGGGCATCCTGTGGTCCCCAAAGGGAAACCGGTCCGGGAGCGGGCGATTTCGTATCAGCTAGTTGGTGGGGTAACGGCCCACCAAGGCGACGACGCGTAGCTGGTCTGAGAGGACGGCCAGCCACATTGGGACTGAGACACTGCCCAGACTCCTACGGGGGGCTGCAGTAACGAATCTTCCGCAATGCGCGCAAGCGTGACGGAGCGACGCCGCGTGGAGGTTAAGTCCTTCGGGATGTAAACTCCTGTCAGGGGTTACCAAGTTCTGAGGAGCCCCAGAGGAAAGCACGGCTAACTCTGTGCCAGCAGCCGCGG                                                                                                                            ]
[+] EMBL CD164412             [                  AGAGTTTGATCCTGGCTCAGCCTGAACGCTGGCGGCGTGGCTAAGACATGCAAGTCGTACGGGGCCCGCAAGGGCCCAGTGGCGGACGGGTGAGTAATGAATCGCTAACGTGCCCCGATCCCTGGGATAGCCGGCCGAAAGGCCGGGTAATACCAGATGACGTGACCGCAGGGCATCCTGAGGTCCCCAAAGGGAAACCGGTCCGGGAGCGGGCGATTTCGTATCAGCTAGTTGGTGGGGTAACGGCCCACCAAGGCGACGACGCGTAGCTGGTCTGAGAGGACGGCCAGCCACATTGGGACTGAGACACTGCCCAGACTCCTACGGGGGGCTGCAGTAACGAATCTTCCGCAATGCGCGCAAGCGTGACGGAGCGACGCCGCGTGGAGGTTAAGTCCTTCGGGATGTAAACTCCTGTCAGGGGTTACCAAGTTCTGAGGA                                                                                                                                                                       ]
[+] EMBL CD164474             [                  AGAGTTTGATCCTGGCTCAGCCTGAACGCTGGCGGCGTGGCTAAGACATGCAAGTCGTACGGGGCCCGCAAGGGCCCAGTGGCGGACGGGTGAGTAATGAATCGCTAACGTGCCCCGATCCCTGGGATAGCCGGCCGAAAGGCCGGGTAATACCAGATGACGTGACCGCAGGGCATCCTGTGGTCCCCAAAGGGAAACCGGTCCGGGAGCGGGCGATTTCGTATCAGCTAGTTGGTGGGGTAACGGCCCACCAAGGCGCCGACGCGTAGCTGGTCTGAGAGGACGGCCAGCCACATTGGGACTGAGACACTGCCCAGACTCCTACGGNGGGCTGCAGTAACGAATCTTCCGCAATGCGCGCAAGCGTGACGGAGCGACGCCGCGTGGAGGTTAAGTCCTTCGGGATGTAAACTCCTGTCAGG                                                                                                                                                                                          ]




>consensus_8978#0
CGTGGGCACTCCAATTGAAGAGTTTGATCCTGGCTCAGCCTGAACGCTGGCGGCGTGGCT
AAGACATGCAAGTCGTACGGGGCCCGCAAGGGCCCAGTGGCGGACGGGTGAGTAATGAAT
CGCTAACGTGCCCCGATCCCTGGGATAGCCGGCCGAAAGGCCGGGTAATACCAGATGACG
TGACCGCAGGGCATCCTGTGGTCCCCAAAGGGAAACCGGTCCGGGAGCGGGCGATTTCGT
ATCAGCTAGTTGGTGGGGTAACGGCCCACCAAGGCGACGACGCGTAGCTGGTCTGAGAGG
ACGGCCAGCCACATTGGGACTGAGACACTGCCCAGACTCCTACGGGGGGCTGCAGTAACG
AATCTTCCGCAATGCGCGCAAGCGTGACGGAGCGACGCCGCGTGGAGGTTAAGTCCTTCG
GGATGTAAACTCCTGTCAGGGGTTACCAAGTTCTGAGGAGCCCCAGAGGAAGGCACGGCT
AACTCTGTGCCAGCAGCCGCGGTAATACAGAGGTGCCGAGCGTTAGGCGGAATCACTGGG
CTTAAAGCGCGTGTAGGCGGGTCGTTAAGTGTCCGCGTGAAATCCCACGGCTCAACCGTG
GAACTGCCGGGCATACTGGCGACCTT

consensusID : consensus_8978#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 560
fasta sequence

                              [AATTTGCGCGTTAACTGCGTCGCAAACTGAGAGTATCACTAGAGGAAGAGACGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGTCTCAAGCGTTGTTCGGAATCACTGGGCGTAAAGGGTGCGTAGGCTGTGTTGTAAGTCAGAGGTGAAATCCCGGGGCTCAACCTCGGAACTGCCTCCGATACTGCAAGACTTGAGGACTGGAGAGGAGATTGGAATTCATGGTGGAGCAGTGAAATGCGTAGATATCATGAGGAACGCTAGTGGCGTAGGCGAATCTCTGGACAGTTCCTGACGCTGAGGCACGAAGGCCAGGGGAGCAAACGGGATTAGATACCCCGGTAGTCCTGGCAGTAAACGGTGCACGCTTGGTGTGGGAGGAATCGACCCCTTCCGTGCCGTAGCTAACGCGTTAAGCGTGCCGCCTGGGAAGTACGGTCGCAAGACTAAAACTCAAAGAAATTGACGGGGACCCGCACAAGCGGTGGAGTATGTGGCTTAATTCGATGCAACGCGAAGAACCTTACCTGNGCTTGACATGCATTTCTAAGGCG]

[-] EMBL CD086761             [AATTTGCGCGTTAACTGCGTCGCAAACTGAGAGTATCACTAGAGGAAGAGACGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGTCTCAAGCGTTGTTCGGAATCACTGGGCGTAAAGGGTGCGTAGGCTGTGTTGTAAGTCAGAGGTGAAATCCCGGGGCTCAACCTCGGAACTGCCTCCGATACTGCAAGACTTGAGGACTGGAGAGGAGATTGGAATTCATGGTGGAGCAGTGAAATGCGTAGATATCATGAGGAACGCTAGTGGCGTAGGCGAATCTCTGGACAGTTCCTGACGCTGAGGCACGAAGGCCAGGGGAGCAAACGGGATTAGATACCCCGGTAGTCCTGGCAGTAAACGGTGCACGCTTGGTGTGGGAGGAATCGACCCCTTCCGTGCCGTAGCTAACGCGTTAAGCGTGCCGCCTGGGAAGTACGGTCGCAAGACTAAAACTCAAAGAAATTGACGGGGACCCGCACAAGCGG                                                                     ]
[+] EMBL CD088114             [                                                                                                     TTCGGAATCACTGGGCGTAAAGGGTGCGTAGGCTGTGTTGTAAGTCAGAGGTGAAATCCCGGGGCTCAACCTCGGAACTGCCTCCGATACTGCAAGACTTGAGGACTGGAGAGGAGATTGGAATTCATGGTGGAGCAGTGAAATGCGTAGATATCATGAGGAACGCTAGTGGCGTAGGCGAATCTCTGGACAGTTCCTGACGCTGAGGCACGAAGGCCAGGGGAGCAAACGGGATTAGATACCCCGGTAGTCCTGGCAGTAAACGGTGCACGCTTGGTGTGGGAGGAATCGACCCCTTCCGTGCCGTAGCTAACGCGTTAAGCGTGCCGCCTGGGAAGTACGGTCGCAAGACTAAAACTCAAAGAAATTGACGGGGACCCGCACAAGCGGTGGAGTATGTGGCTTAATTCGATGCAACGCGAAGAACCTTACCTGNGCTTGACATGCATTTCTAAGGCG]
[+] EMBL CD087424             [                                                                                                                                                                           CTCGGAACTGCCTCCGATACTGCAAGACTTGAGGACTGGAGAGGAGATTGGAATTCATGGTGGAGCAGTGAAATGCGTAGATATCATGAGGAACGCTAGTGGCGTAGGCGAATCTCTGGACAGTTCCTGACGCTGAAGCACGAAGGCCAGGGGAGCAAACGGGATTAGATACCCCGGTAGTCCTGGCAGTAAACGGTGCACGCTTGGTGTGGGAGGAATCGACCCCTTCCGTGCCGTAGCTAACGCGTTAAGCGTGCCGCCTGGGAAGTACGGTCGCAAGACTAAAACTCAAAGAAATTGACGGGGACCCGCACAAGCGG                                                                     ]




>consensus_8978#1
AATTTGCGCGTTAACTGCGTCGCAAACTGAGAGTATCACTAGAGGAAGAGACGGCTAACT
CTGTGCCAGCAGCCGCGGTAATACAGAGGTCTCAAGCGTTGTTCGGAATCACTGGGCGTA
AAGGGTGCGTAGGCTGTGTTGTAAGTCAGAGGTGAAATCCCGGGGCTCAACCTCGGAACT
GCCTCCGATACTGCAAGACTTGAGGACTGGAGAGGAGATTGGAATTCATGGTGGAGCAGT
GAAATGCGTAGATATCATGAGGAACGCTAGTGGCGTAGGCGAATCTCTGGACAGTTCCTG
ACGCTGAGGCACGAAGGCCAGGGGAGCAAACGGGATTAGATACCCCGGTAGTCCTGGCAG
TAAACGGTGCACGCTTGGTGTGGGAGGAATCGACCCCTTCCGTGCCGTAGCTAACGCGTT
AAGCGTGCCGCCTGGGAAGTACGGTCGCAAGACTAAAACTCAAAGAAATTGACGGGGACC
CGCACAAGCGGTGGAGTATGTGGCTTAATTCGATGCAACGCGAAGAACCTTACCTGNGCT
TGACATGCATTTCTAAGGCG

consensusID : consensus_8978#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 517
fasta sequence

                              [ACTCCACCGCTAGCGCAGATCCGCGTCAGTCACTGTGAATTTTACTGTTGCGACCGTACTTACCATGCGGAACGCTTAACACGGGAGCTACCGCACTGAAAGGGTTGATTGCTGCTACACCATGTCGTGCACCGTTAACTGACACGACTACCGGTGTATCTAATCACGTACGCTGACTTTGTCTTCGTGCCTAAATGCCTCGAACTGTACTCAGATTCGCCCATGACAGTATCAGCCATAATGATATTGACCCTTTTTACTGTTTAACCATGACTCACACTATGCATCGGACTCCTCAAGTCTGGGTAAAGCTGAAGCACTACCGAAGTTGAGCCCGGGTATTTGACCTCTGTCTTACAACAGCAGCCTACGCACCCTTTACGCCCATTGATTCCGATCTACGCTTGACACCTTTGCATGACCGCGGCTGCTGGCTCAATGTTAGCCGTCTCTTCCTCTAGTGATACTCTCAGTTTGCGACGCAGTTAACGCGCAAATTTACTCTCACTTGGCCTCT]

[+] EMBL CD086853             [ACTCCACCGCTAGCGCAGATCCGCGTCAGTCACTGTGAATTTTACTGTTGCGACCGTACTTACCATGCGGAACGCTTAACACGGGAGCTACCGCACTGAAAGGGTTGATTGCTGCTACACCATGTCGTGCACCGTTAACTGACACGACTACCGGTGTATCTAATCACGTACGCTGACTTTGTCTTCGTGCCTAAATGCCTCGAACTGTACTCAGATTCGCCCATGACAGTATCAGCCATAATGATATTGACCCTTTTTACTGTTTAACCATGACTCACACTATGCATCGGACTCCTCAAGTCTGGGTAAAGCTGAAGCACTACCGAAGTTGAGCCCGGGTATTTGACCTCTGTCTTACAACAGCAGCCTACGCACCCTTTACGCCCATTGATTCCGATCTACGCTTGACACCTTTGCATGACCGCGGCTGCTGGCTCAATGTTAGCCGTCTCTTCCTCTAGTGATACTCTCAGTTTGCGACGCAGTTAACGCGCAAATTTACTCTCACTTGGCCTCT]




>consensus_8978#2
ACTCCACCGCTAGCGCAGATCCGCGTCAGTCACTGTGAATTTTACTGTTGCGACCGTACT
TACCATGCGGAACGCTTAACACGGGAGCTACCGCACTGAAAGGGTTGATTGCTGCTACAC
CATGTCGTGCACCGTTAACTGACACGACTACCGGTGTATCTAATCACGTACGCTGACTTT
GTCTTCGTGCCTAAATGCCTCGAACTGTACTCAGATTCGCCCATGACAGTATCAGCCATA
ATGATATTGACCCTTTTTACTGTTTAACCATGACTCACACTATGCATCGGACTCCTCAAG
TCTGGGTAAAGCTGAAGCACTACCGAAGTTGAGCCCGGGTATTTGACCTCTGTCTTACAA
CAGCAGCCTACGCACCCTTTACGCCCATTGATTCCGATCTACGCTTGACACCTTTGCATG
ACCGCGGCTGCTGGCTCAATGTTAGCCGTCTCTTCCTCTAGTGATACTCTCAGTTTGCGA
CGCAGTTAACGCGCAAATTTACTCTCACTTGGCCTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8978#0      CGTGGGCACTCCAATTGAAGAGTTTGATCCTGGCTCAGCCTGAACGCTGGCGGCGTGGCT 60
consensus_8978#1      ------------------------------------AATTTGCGCGTTAACTGCGTCGCA 24
consensus_8978#2      -------------------------------------------------ACTCCACCGCT 11
                                                                        *  *   ** 

consensus_8978#0      AAGACATGCAAGTCGTACGGGGCCCGCAAGGGCCCAGTGGCGGACGGGTGAGTAATGAAT 120
consensus_8978#1      AAC---TGAGAGTATCACTAGAGGAAGAGACGGCTAACTCTGTGCCAGCAGCCGCGGTAA 81
consensus_8978#2      AGCGC---AGATCCGCGTCAGTCACTGTGAATTTTACTGTTGCGACCGTACTTACCATGC 68
                      *         *         *              *     *     *            

consensus_8978#0      CGCTAACGTGCCC--CGATCCCTGGGATAGCCGGCCG-AAAGGCCGGGTAATACCAGATG 177
consensus_8978#1      TACAGAGGTCTCAAGCGTTGTTCGGAATCACTGGGCGTAAAGGGTGCGTAG-GCTGTGTT 140
consensus_8978#2      GG--AACGCTTAACACG------GGAGCTACCGCACTGAAAGGGTTGAT-------TGCT 113
                           * *       **      **     * *  *  *****     *           

consensus_8978#0      ACGTGACCGCAGGGCATCCTGTGGTCCCCAAAGGGAAACCGG-TCCGGGAGCGGGCGATT 236
consensus_8978#1      GTAAGTCAGAGGTGAAATCCCGGGGCTCAACCTCGGAACTGCCTCCGATACTGCAAGACT 200
consensus_8978#2      GCTACACCATGTCGTGCACCGTTAACT-------GACACGACTACCGGTGTATCTAATCA 166
                            *      *    *      *        *  **     ***             

consensus_8978#0      TC-GTATCAGCTAGTTGGTGGGGTAACGGCCCACCAAGGCGACGACGCGTAGCTGGTCTG 295
consensus_8978#1      TGAGGACTGGAGAGGAGATTGGAATTCATGGTGGAGCAGTGA-AATGCGTAGATA--TCA 257
consensus_8978#2      CGTACGCTGACTTTGTCTTCGTGCCTAAATGCCTCGAACTG----TACTCAGATTCGCCC 222
                                        * *                   *      *  ** *      

consensus_8978#0      AGAGGACGGCCAGCCACATTGGGACTGAGACACTGCCCAGACTC-CTACGGGGGGCTGCA 354
consensus_8978#1      TGAGGAACGCTAGTGGCGTAGG---CGAATCTCTGGACAGTTCC-TGACG-----CTG-A 307
consensus_8978#2      ATGACAGTATCAGCCATAATGATATTGACCCTTTTTACTGTTTAACCATGACTCACACTA 282
                           *     **       *     **  *  *   * *       * *     *   *

consensus_8978#0      GTAACGAATCTTCCGCAATGCGCGCAAGCGTGACGGAGCGACGCCGCGTGGAGGTTAAGT 414
consensus_8978#1      GGCACGAAG-----GCCAGGGGAGCAAACGGGATTA---GATACCCCG-GTAGTCCTGGC 358
consensus_8978#2      TGCATCGGACTCCTCAAGTCTGGGTAAAGCTGAAGC---ACTACCGAAGTTGAGCCCGGG 339
                         *                 * * **    **          **             * 

consensus_8978#0      CCTTCGGGATGTAAACTCCTGTCAGGGGTTACCAAGTTCTGAGGAGCCCCAGAGGAAG-G 473
consensus_8978#1      AGTAAACGGTGCACGCTTGGTGTGGGAGGAATCGACCCCTTCCGTGCCGTAGCTAACGCG 418
consensus_8978#2      TATTTGACCTCTGT-CTTACAACAGCAGCCTACGCACCCTTTACGCCCATTGATTCCGAT 398
                        *      *     **       *  *    *     **      **   *     *  

consensus_8978#0      CACGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGTGCCGAGCGTTAGGCGGAAT 533
consensus_8978#1      TTAAGCGTGCCGCCTGGGAAGTACGGTCGCAAGACTAAAACTCAAAGAAATTGACGGGGA 478
consensus_8978#2      CTACGCTTGACACCTTTGCATGACCGCGGC--TGCTGG----CTCAATGTTAGCCGTCTC 452
                          **        *        * *  *     *       *  *    * * **    

consensus_8978#0      CA-CTGGGCTTAAAGCGCGTGTAGGCGGGTCGTTAAGTGTCCGCGTGAAATCCCACGGCT 592
consensus_8978#1      C--CCGCACAAGCGGTG-GAGTATGTGGCTTAATTCGATGCAACGCGAAG------AACC 529
consensus_8978#2      TTCCTCTAGTGATACTCTCAGTTTGCGACGCAGTTAA----CGCGCAAATT-----TACT 503
                         *                **  * *      *         **  **         * 

consensus_8978#0      CAACCGTGGAACTGCCGGGCATACTGGCGACCTT 626
consensus_8978#1      TTACC-TGNGCTTGACATGCATTTCTAAGGCG-- 560
consensus_8978#2      CTCACTTGGCCTCT-------------------- 517
                          * **