These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8979#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 686 fasta sequence [GCGTATTACACTTTTCGATACTGTACTGAGACATCACATCTAATTAGAAAATAAAATAAAAATTGAATGAAAAAGCACTTCACTAATTTCATATTCAGTCAGATCAGAATCCATGTTGATCTGGAGGAAATAACTTGTAAGCGGAGATGTATGGTGACTTATGACCGAGAAATAGACTTCTCCACTGAATATCACTACATCCTGGGGTCGATATTCATTTCGAGACTCCGCTAGATACCATTCATCTCTGCTGAAAACACTTGTGACTCAGTGGCAATATCGAGGTAATCCGTACAGGTAACACAACTGACGAAATATACTGATCGATCGTAGTCTTTAACACCAGTGGGAAGATTGAATGATGAGTACACACAGGTGAATTAATTCCTTATTTGAATGCCACCAGGGAAACTCATAGAAAATTTAAGATGTCCTGCCAAACCTTCGACTATATATGTTGGCGTGGTGCACCTTTATTGCACAGAACCTACATACCATTCGGCAAACAATTAGGGAGGGATGAAAATGGTCAAGATTTTCTGATAAACTCTCGATGTTAATTAAACACTAGAATTTACATACTGGCATTAGCAACGACGACATGGAAAATAATTGTATACAGTCGAAGTTGGGGAAGACTATGGGTGAAATACAGTTTCTCTCATAATGATCACGTAAACGACGTT] [+] EMBL CD114286 [GCGTATTACACTTTTCGATACTGTACTGAGACATCACATCTAATTAGAAAATAAAATAAAAATTGAATGAAAAAGCACTTCACTAATTTCATATTCAGTCAGATCAGAATCCATGTTGATCTGGAGGAAATAACTTGTAAGCGGAGATGTATGGTGACTTATGACCGAGAAATAGACTTCTCCACTGAATATCACTACATCCTGGGGTCGATATTCATTTCGAGACTCCGCTAGATACCATTCATCTCTGCTGAAAACACTTGTGACTCAGTGGCAATATCGAGGTAATCCGTACAGGTAACACAACTGACGAAATATACTGATCGATCGTAGTCTTTAACACCAGTGGGAAGATTGAATGATGAGTACACACAGGTGAATTAATTCCTTATTTGAATGCCACCAGGGAAACTCATAGAAAATTTAAGATGTCCTGCCAAACCTTCGACTATATATGTTGGCGTGGTGCACCTTTATTGCACAGAACCTACATACCATTCGGCAAACAATTAGGGAGGGATGAAAATGGTCAAGATTTTCTGATAAACTCTCGATGTTAATTAAACACTAGAATTTACATACTGGCATTAGCAACGACGACATGGAAAATAATTGTATACAGTCGAAGTTGGGGAAGACTATGGGTGAAATACAGTTTCTCTCATAATGATCACGTAAACGACGTT] consensusID : consensus_8979#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 499 fasta sequence [AACTAACTAAGCCACCGTGACGTTGATTTTAGTCCTATCTTTGGTACTCAATGTTTCTAACCATTAGTTTCGAAAAGTCCTCCGTAAGGATCATAACAAGTATTTTCCGGAAAAATCTTTTATTTAATCGTTTTTGAATTATTAGTAAATAGTTGAATTCATGAGTCAATCGAAGCTAGACCACCATAGAAAACCTGGAAGCGCTGGACGGCCGTTTCGTATTAGTATTAGACTCCTCAGCAGTGCGCATCCACAATCCCGCCTCGCGAGATTCGAAACCAGGACCTATCGGTCTCGCGCGCGAACGCTAATTTCCCTCTACTTCACACGTTAACAAACCATCTCGTTATCCACCGTTTTGTCCTTCACTATTCTGCACTTTGGATGGTATCTTATGATTGAAATAATGAGTAGATTCAATAAAGTGTTCCTATCACTTAAACTTAGACCTTGTAAAAGTATGTGAATTCACTGGCTAAAAAGAACTAGCGGTCTCATA] [+] EMBL CD127612 [AACTAACTAAGCCACCGTGACGTTGATTTTAGTCCTATCTTTGGTACTCAATGTTTCTAACCATTAGTTTCGAAAAGTCCTCCGTAAGGATCATAACAAGTATTTTCCGGAAAAATCTTTTATTTAATCGTTTTTGAATTATTAGTAAATAGTTGAATTCATGAGTCAATCGAAGCTAGACCACCATAGAAAACCTGGAAGCGCTGGACGGCCGTTTCGTATTAGTATTAGACTCCTCAGCAGTGCGCATCCACAATCCCGCCTCGCGAGATTCGAAACCAGGACCTATCGGTCTCGCGCGCGAACGCTAATTTCCCTCTACTTCACACGTTAACAAACCATCTCGTTATCCACCGTTTTGTCCTTCACTATTCTGCACTTTGGATGGTATCTTATGATTGAAATAATGAGTAGATTCAATAAAGTGTTCCTATCACTTAAACTTAGACCTTGTAAAAGTATGTGAATTCACTGGCTAAAAAGAACTAGCGGTCTCATA] consensusID : consensus_8979#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 365 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTCATTACAAATTTGTTAATGATAGCATAGAAGCAATGATAAAAACAGATCTATGATAAACAATGTAAATAAATACATTTCTTTTAGAATAAAAGATCATTTTGGTAAATTTTATGGATCAAAAATTGATCTGAAAAATAAAAAAGAAACCATAGTGAATGTTAAAGCAAAAAGCGATAAGAAAAAATTAGTGTTTGTCTCTTGATTATAACTCCGCCTGTAGCTCTTAGAGAGTTACTGCCGGTCCCAAGCCCGGCAGTAGCCCCCGGAGAAGCTACAGGCGGAAAGGATTGTTCAGGATAGAGTTGGATGGAGAATGCTGGTGGGCGGGGCTTATGCCCC] [+] EMBL AI395084 [TTTTTTTTTTTTTTTTTTTTTTTTTCATTACAAATTTGTTAATGATAGCATAGAAGCAATGATAAAAACAGATCTATGATAAACAATGTAAATAAATACATTTCTTTTAGAATAAAAGATCATTTTGGTAAATTTTATGGATCAAAAATTGATCTGAAAAATAAAAAAGAAACCATAGTGAATGTTAAAGCAAAAAGCGATAAGAAAAAATTAGTGTTTGTCTCTTGATTATAACTCCGCCTGTAGCTCTTAGAGAGTTACTGCCGGTCCCAAGCCCGGCAGTAGCCCCCGGAGAAGCTACAGGCGGAAAGGATTGTTCAGGATAGAGTTGGATGGAGAATGCTGGTGGGCGGGGCTTATGCCCC] consensusID : consensus_8979#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 300 fasta sequence [CTAGATGGAATCTAGTGTAAATGCATAAAAACGAAACATACCTCAGGCTCGTTTTCCTTCTCCTCCACCTCGTAGACATCTTCGGAGACCTCTTGTA-TTTTTCTGTGAGCCACCATGTTTGCAAACACATCTTTGCCGTCATTAGCTTTGCGTAGTCCTTTGTTGTTTAATAAAACGGCTGGTTTGGAAGACTGACGCATAGCTTTGTATTCTTCTAGTGTGTAGCTTTTCGGTTCTTCCTCAACTGGGGTTTCTGTGCCGACAACCACACCCTCCTCATTCTC-AGCTGTGGCATGCTCT] [+] EMBL CD158147 [CTAGATGGAATCTAGGGTAAATGCATAAAAACGAAACATACCTCAGGCTCGTTTTCCTTCTCCTCCACCTCGAAGACATCTTCGGAGACCTCTTGTA TTTTTCTGTGAGCCACCATGTTTGCAAACACATCTTTGCCGACATTAGCTTTGCGTAGTCCTTTGTTGTTTAATAAAACGGCTGGTTTGGAAGACTGACGCATAGCTTTGTATTCTTCTAGTGTGTAGCTTTTCGGTTCTTCCTCAACTGGGGTTTCTGTGCCGACAACCACACCCTCCTCATTCTC AGCTGTGGCATGCTC ] [+] EMBL CD092323 [CTAGATGGAATCTAGTGTAAATGCATAAAAACGAAACATACCTCAGGCTCGTTTTCCTTCTCCTCCACCTCGTAGACATCTTCGGAGACCTCTTGTA TTTTTCTGTGAGCCACCATGTTTGCAAACACATCTTTGCCGTCATTAGCTTTGCGTAGTCCTTTGTTGTTTAATAAAACGGCTGGTTTGGAAGACTGACGCATAGCTTTGTATTCTTCTAGTGTGTAGCTTTTCGGTTCTTCCTCAACTGGGGTTTCTGTGCCGACAACCACACNCTCCTCATTCTCAAACTGT GCATGCTC ] [+] EMBL CD157992 [CTAGATGGAATCTAGTGTAAATGCATAAAAACGAAACATACCTCAGGCTCGTTTTCCTTCTCCTCCACCTCGTAGACATCTTCGGAGACCTCTTGTA TTTTTCTGTGAGCCACCATGTTTGCAAACACATCTTTGCCGTCATTAGCTTTGCGTAGTCCTTTGTTGTTTAATAAAACGGCTGGTTTGGAAGACTGACGCATAGCTTTGTATTCTTCTAGTGTGTAGCTTTTCGGTTCTTGCTCAACTGGGGTTTCTGTGCCGAC ACCACACCCTCCTCATTCTC AGCTGTCGCATGCTC ] [-] EMBL CD193487 [ TAGATGGAATCTAGTGTAAATGCATAAAAACGAAACATACCTCAGGCTCGTTTTCCTTCTCCTCCACCTCGTAGACATCTTCGGAGACCTCTTGTATTTTTTCTGTGAGCCACCATGTTTGCAAACACATCTTTGCCGTCATTAGCTTTGCGTAGTCCTTTGTTGTTTAATAAAACGGCTGGTTTGGAAGACTGACGCATAGCTTTGTATTCTTCTAGTGTGTAGCTTTTCGGTTCTTCCTCAACTGGGGTTTCCGTGCCGACAACCACACCCTCCTCATTCTC AGCTGTGGCATGCTCT] consensusID : consensus_8979#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 224 fasta sequence [AATACGTGGAAGAGCTAGCAGTGACAGCGGAAGAAGCTGCAAGAGAAGGAAGTATGAAACAATTACATGACACGACGAAGAAACCAGCAGGGAGATATAGTAAACTAGAGAAACCAGTCAAGGACAAAGAAGGGAAGACAATCACGGAGATTCAAGAACAGAGGAACAGATAGGTAGAATACTTCGAGGAACTCTTGAATAGACCGGCTCCACTGAACCCACCG] [+] EMBL CD194781 [AATACGTGGAAGAGCTAGCAGTGACAGCGGAAGAAGCTGCAAGAGAAGGAAGTATGAAACAATTACATGACACGACGAAGAAACCAGCAGGGAGATATAGTAAACTAGAGAAACCAGTCAAGGACAAAGAAGGGAAGACAATCACGGAGATTCAAGAACAGAGGAACAGATAGGTAGAATACTTCGAGGAACTCTTGAATAGACCGGCTCCACTGAACCCACCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8979#2 ------------------------------------------------------------ consensus_8979#4 ------------------------------------------------------------ consensus_8979#1 ------------------------------------------------------------ consensus_8979#3 ------------------------------------------------------------ consensus_8979#0 GCGTATTACACTTTTCGATACTGTACTGAGACATCACATCTAATTAGAAAATAAAATAAA 60 consensus_8979#2 ------------------------------------------------------------ consensus_8979#4 ------------------------------------------------------------ consensus_8979#1 ------------------------------------------------------------ consensus_8979#3 ------------------------------------------------------------ consensus_8979#0 AATTGAATGAAAAAGCACTTCACTAATTTCATATTCAGTCAGATCAGAATCCATGTTGAT 120 consensus_8979#2 ----------------------------------------TTTTTTTTTTTTTTTTTTTT 20 consensus_8979#4 ------------------------------------------------------------ consensus_8979#1 -------AACTAACTAAGCCACCGTGACGTTGATTTTAGTCCTATCTTTGGTACTCAATG 53 consensus_8979#3 -----------------------------------------------CTAGATGGAATCT 13 consensus_8979#0 CTGGAGGAAATAACTTGTAAGCGGAGATGTATGGTGACTTATGACCGAGAAATAGACTTC 180 consensus_8979#2 TTT-TTCATTACAAATTTGTTAATGATAGCATAGAAGCAATGATAAAAACAGATCTATGA 79 consensus_8979#4 -------------AATACGTGGAAGAGCTAGCAGTGACAGCGGAAGAAGCTGCAAGAGAA 47 consensus_8979#1 TTT-CTAACCATTAGTTT-CGAAAAGTCCTCCGTAAGGATCATAACAAGTATTTTCCGGA 111 consensus_8979#3 AGT-GTAAATGCATAAAAACGAAACATACCTCAGGCTCGTTTTCCTTCTCCTCCACCTCG 72 consensus_8979#0 TCCACTGAATATCACTACATCCTGGGGTCGATATTCATTTCGAGACTCCGCTAGATACCA 240 consensus_8979#2 TAAACAATGTAAATAAATACATTTCTTTTAGAATAAA---AGATCAT-TTTGGTAAATTT 135 consensus_8979#4 GGAAGTATG-AAACAATTACATGACACGACGAAGAAA---CCAGCA-----GGGAGATAT 98 consensus_8979#1 AAAATCTTTTATTTAATCGTTTTTGAATTATTAGTAA---ATAGTT-----GAATTCATG 163 consensus_8979#3 TAGACATCTTCGGAGACCTCTTGTATTTTTCTGTGAG---CCACCATGTTTGCAAACACA 129 consensus_8979#0 TTCATCTCTGCTGAAAACACTTGTGACTCAGTGGCAATATCGAGGTAATCCGTACAGGTA 300 * * * * * * consensus_8979#2 TATGGATCAAAAATTGATCTGAAAAATAAAAAAGAAACCATAGTGAATGTTAAAGCAAAA 195 consensus_8979#4 AGTAAACTAGAGAAACCAGTCAAGGACAAAGAAGGGAAGACAATCACGG--AGATTCAAG 156 consensus_8979#1 AGTCAATCGAAGCTAGACCACCATAGAAAACCTGGAAGCGCTG-GACGGCCGTTTCGTAT 222 consensus_8979#3 TCTTTGCCGTCATTAGCTTTGCGTAGTCCTTTGTTGTTTAATAAAACGGCTGGTTTGGAA 189 consensus_8979#0 ACACAACTGACGAAATATACTGATCGATCGTAGTCTTTAACACCAGTGGGAAGATTGAAT 360 * * consensus_8979#2 AGCGATAAGAAAAAATTAGTGTTTGTCTCTTGATTATAACTCCGCCTGTAGCTCTTAGAG 255 consensus_8979#4 AAC-AGAGGAACAGATAGGT---------------AGAATACTTCGAGGAACTCTTGAAT 200 consensus_8979#1 TAGTATTAGACTCCTCAGCAGTGCGCATCC--ACAATCCCGCCTCGCGAGATTCGAAACC 280 consensus_8979#3 GACTGACGCATAGCTTTGTATT---CTTCTAGTGTGTAGCTTTTCGGTTCTTCCTCAACT 246 consensus_8979#0 GATGAGTACACACAGGTGAATTAATTCCTTATTTGAATGCCACCAGGGAAACTCATAGAA 420 * * consensus_8979#2 AGTTACTGCCGGTCCCAAGCCC-GGCAGTAGCCCCCGGAGAAGCTACAGGCGGAAAGGAT 314 consensus_8979#4 AG--ACCGGCTCCACTGAACCC-ACCG--------------------------------- 224 consensus_8979#1 AGGACCTATCGGTCTCGCGCGCGAACGCTAATTTCCCTCTACTTCACACGTTAACAAACC 340 consensus_8979#3 GGGGTTTCTGTGCCGACAACCACACCCTCCTCATTCTCAGCTGTGGCATGCTCT------ 300 consensus_8979#0 AATTTAAGATGTCCTGCCAAACCTTCGACTATATATGTTGGCGTGGTGCACCTTTATTGC 480 * consensus_8979#2 TGTTCAG-GATAGAGTTGGATGGAGAATGCTGGTGGGCGGGGCTTATGCCCC-------- 365 consensus_8979#4 ------------------------------------------------------------ consensus_8979#1 ATCTCGT-TATCCACCGTTTTGTCCTTCACTATTCTGCACTTTGGATGGTATCTTATGAT 399 consensus_8979#3 ------------------------------------------------------------ consensus_8979#0 ACAGAACCTACATACCATTCGGCAAACAATTAGGGAGGGATGAAAATGGTCAAGATTTTC 540 consensus_8979#2 ------------------------------------------------------------ consensus_8979#4 ------------------------------------------------------------ consensus_8979#1 TGAAATAATGAGTAGATTCAATAAAGTGTTCCTATCACTTAAACTTAGACCTTGTAAAAG 459 consensus_8979#3 ------------------------------------------------------------ consensus_8979#0 TGATAAACTCTCGATGTTAATTAAACACTAGAATTTACATACTGGCATTAGCAACGACGA 600 consensus_8979#2 ------------------------------------------------------------ consensus_8979#4 ------------------------------------------------------------ consensus_8979#1 TATGTGAATTCACTGGCTAAAAAGAACTAGCGGTCTCATA-------------------- 499 consensus_8979#3 ------------------------------------------------------------ consensus_8979#0 CATGGAAAATAATTGTATACAGTCGAAGTTGGGGAAGACTATGGGTGAAATACAGTTTCT 660 consensus_8979#2 -------------------------- consensus_8979#4 -------------------------- consensus_8979#1 -------------------------- consensus_8979#3 -------------------------- consensus_8979#0 CTCATAATGATCACGTAAACGACGTT 686 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||