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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8981#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 824 fasta sequence
[ACCCTGGGCAAGGGTGGNAAATCAGGGAATATCTCTTTTAAGTGGGCTATTAACATCCCAAACTGTGTTCCCCAATCCCCAAGATGGTTGAGTTTCAGTACTTTGTGTCCCAAAAATGAAAGCAAACGGGAAATACTTTCTCCAATAATAGTTGATCTTAGATGTCCCACATGCATTTCTTTGGCGATGTTTGGAGAGGACATATCGACAATTACAGAGTATTTATGAGGTATGAATGGGGGTGTAACCCCATGAAGTAGAATTCTTCTGACTTCATTAGAAATAAACCGTTGTTTAATCCAAATGTTTATAAAGCCAGGAGGAACGACGTCTACTTTTTCTATTAAATCATTGACAGGTAAAGCGGCAACGATCGATTTCGCAATATCAAATGGATTTTGATCATTGTTTGACTCTTTTCGAATGCTGGGAGCAGAGTTACACTGATAATCCCCAAAACTACGTTTAGTAGGAACACTGAGTTGTACACTGTGCTTAGTATTTATGAACACTGTTTTTATAGCGTAATCAAACAAAGCAGCCAAAGCAGCTTGGATACTAATGGAATTGTATTGCACATGGTCATTCAATTGTTTTAGATACTAAAACAGTGAACATTTTACTTTAATACCTTTTCTAGATGGTTTGCTTGATACCGGAGCTTTTCACTGTCTTCCAATATTTTTTTTATTTCAGAAAAATTTGCGGACTCAAGAAGTTTATCATATTCGTTTTGTAGGCACCTAACGTCTTTCCTCTGAATAGAATTAGTAGTCATCTCATTAAACCAGCAGACTGTTATGTTGCGAATGACCTAGCGGTGT]
[+] EMBL CD167857 [ACCCTGGGCAAGGGTGGNAAATCAGGGAATATCTCTTTTAAGTGGGCTATTAACATCCCAAACTGTGTTCCCCAATCCCCAAGATGGTTGAGTTTCAGTACTTTGTGTCCCAAAAATGAAAGCAAACGGGAAATACTTTCTCCAATAATAGTTGATCTTAGATGTCCCACATGCATTTCTTTGGCGATGTTTGGAGAGGACATATCGACAATTACAGAGTATTTATGAGGTATGAATGGGGGTGTAACCCCATGAAGTAGAATTCTTCTGACTTCATTAGAAATAAACCGTTGTTTAATCCAAATGTTTATAAAGCCAGGAGGAACGACGTCTACTTTTTCTATTAAATCATTGACAGGTAAAGCGGCAACGATCGATTTCGCAATATCAAATGGATTTTGATCATTGTTTGACTCTTTTCGAATGCTGGGAGCAGAGTTACACTGATAATCCCCAAAACTACGTTTAGTAGGAACACTGAGTTGTACACTGTGCTTAGTATTTATGAACACTGTTTTTATAGCGTAATCAAACAAAGCAGCCAAAGCAGCTTGGATACTAATGGAATTGTA ]
[+] EMBL CD154955 [ TTTCAGTACTTTGTGTCCCAAAAATGAAAGCAAACGGGAAATACTTTCTCCAATAATAGTTGATCTTAGATGTCCCACATGCATTTCTTTGGCGATGTTTGGAGAGGACATATCGACAATTACAGAGTATTTATGAGGTATGAATGGGGGTGTAACCCCATGAAGTAGAATTTTTCTGACTTCATTAGAAATAAACCGTTGTTTAATCCAAATGTTTATAAAGCCAGGAGGAACGACGTCTACTTTTTCTATTAAATCATTGACAGGTAAAGCGGCAACGATCGATTTCGCAATATCAAATGGATTTTGATCATTGTTTGACTCTTTTCGAATGCTGAGAGCAGAGTTACACTGATAAT CCCAAAACTACGTTTAGTAGGAACACTGAGTTGTACACTGTGCTTAGTATTTATGAACACTGTTTTTATAGCGTAATCAAACAAAGCAGCCAAAGCA ]
[-] EMBL CD169948 [ AGCGTAATCAAACAAAGCAGCCAAAGCAGCTTGGATACTAATGGAATTGTATTGCACATGGTCATTCAATTGTTTTAGATACTAAAACAGTGAACATTTTACTTTAATACCTTTTCTAGATGGTTTGCTTGATACCGGAGCTTTTCACTGTCTTCCAATATTTTTTTTATTTCAGAAAAATTTGCGGACTCAAGAAGTTTATCATATTCGTTTTGTAGGCACCTAACGTCTTTCCTCTGAATAGAATTAGTAGTCATCTCATTAAACCAGCAGACTGTTATGTTGCGAATGACCTAGCGGTGT]
consensusID : consensus_8981#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 514 fasta sequence
[AGAGTGTACTGGTCCACTGGATTCCGTCCTCCTTTGATCTTGCTCCGACATTTCTCCTGCTTTGACAAACTTGTTTANAGTCCCTTAACATTTGGTTGTCGGACTCTTTGATTGGATTTTTGTTCACTGATTTGTATATCCTTTCATCCTCAAGCAGTTCTTTGCTTTCCTGATATATTGTTCCTTGTTCATAACTACCGTAGCGCGTTTTTGTGCACTGGAACTATGGTAATATCTTCTCTAGTTCTGAGTTTCTTTAAAACTGTCTGTTCTTGTGCGGTCATTTGGGTTTTGTCTTCTGTCGAGTTAGTGGCACTATGGTTTGTCTTGATTCCTACTGAGTTTTTCACTGTCTTCCAATATTTTTTTATTTCAGAAAAATTTGCGGACTCAAGAAGTTTATCATATTCGTTTTGTAGGCACCTAACGTCTTTCCTCTGAATAGAATTAGTAGTCATCTCATTAAACCAGCAGACTGTTATGTTGCGAATGACCTAGCGGTGTTAAAATTCCC]
[-] EMBL CD152648 [AGAGTGTACTGGTCCACTGGATTCCGTCCTCCTTTGATCTTGCTCCGACATTTCTCCTGCTTTGACAAACTTGTTTANAGTCCCTTAACATTTGGTTGTCGGACTCTTTGATTGGATTTTTGTTCACTGATTTGTATATCCTTTCATCCTCAAGCAGTTCTTTGCTTTCCTGATATATTGTTCCTTGTTCATAACTACCGTAGCGCGTTTTTGTGCACTGGAACTATGGTAATATCTTCTCTAGTTCTGAGTTTCTTTAAAACTGTCTGTTCTTGTGCGGTCATTTGGGTTTTGTCTTCTGTCGAGTTAGTGGCACTATGGTTTGTCTTGATTCCTACTGAGTTTTTCACTGTCTTCCAATATTTTTTTATTTCAGAAAAATTTGCGGACTCAAGAAGTTTATCATATTCGTTTTGTAGGCACCTAACGTCTTTCCTCTGAATAGAATTAGTAGTCATCTCATTAAACCAGCAGACTGTTATGTTGCGAATGACCTAGCGGTGTTAAAATTCCC]
[-] EMBL CD066978 [ GTCCACTGGATTCCGTCCTCCTTTGATCTTGCTCCGACATTTCTCCTGCTTTGACAAACTTGTTTAAAGTCCCTTAACATTTGGTTGTCGGACTCTTTGATTGGATTTTTGTTCACTGATTTGTATATCCTTTCATCCTCAAGCAGT ]
consensusID : consensus_8981#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 471 fasta sequence
[CTAGTTTTGAAGTTTTATAAAAGCTTGAAGGTCTGATAAAGGAGGTGCAGTTTTATGGTCAGGATATATCTCTTTTAAGTGGGCTATTAACATCNCAAACTGTGTTCCCCAATCCCCAAGATGGTTGAGTTTCAGTACTTTGTGTCCCAAAAATGAAAGCAAACGGGAAATACTTTCTCCAATAATAGTTGATCTTAGATGTCCCACATGCATTTCTTTGGCGATGTTTGGAGAGGACATATCGACAATTACAGAGTATTTATGAGGTATGAATGGGGGTGTAACCCCATGAAGTAGAATTTTTCTGACTTCATTAGAAATAAACCGTTGTTTAATCCAAATGTTTATAAAGCCAGGAGGAACGACGTCTACTTTTTCTATTAAATCATTGACAGGTAAAGCGGCAACGATCGATTTCGCAATATCAAATGGATTTTGATCATTGTTTGACTCTTTTCGAATGCTGAGAGC]
[-] EMBL AI975083 [CTAGTTTTGAAGTTTTATAAAAGCTTGAAGGTCTGATAAAGGAGGTGCAGTTTTATGGTCAGGATATATCTCTTTTAAGTGGGCTATTAACATCNCAAACTGTGTTCCCCAATCCCCAAGATGGTTGAGTTTCAGTACTTTGTGTCCCAAAAATGAAAGCAAACGGGAAATACTTTCTCCAATAATAGTTGATCTTAGATGTCCCACATGCATTTCTTTGGCGATGTTTGGAGAGGACATATCGACAATTACAGAGTATTTATGAGGTATGAATGGGGGTGTAACCCCATGAAGTAGAATTTTTCTGACTTCATTAGAAATAAACCGTTGTTTAATCCAAATGTTTATAAAGCCAGGAGGAACGACGTCTACTTTTTCTATTAAATCATTGACAGGTAAAGCGGCAACGATCGATTTCGCAATATCAAATGGATTTTGATCATTGTTTGACTCTTTTCGAATGCTGAGAGC]
[+] EMBL CD195894 [ ATCTTAGATGTCCCACATGCATTTCTTTGGCGATGTTTGGAGAGGACATATCGACAATTACAGAGTATTTATGAGGTATGAATGGGGGTGTAACCCCATGAAGTAGAATTTTTCTGACTTCATTAGAAATAAACCGTTGTTTAATCCAAATGTTTATAAAGCCAGGAGGAACGACGTCTACTTTTTCTATT AATCATTGA ]
consensusID : consensus_8981#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 440 fasta sequence
[TCAAGCAGACGACATAGAGGACAAAGAAACACTCTCAAGGAAAAAAACGAATCAAGATTTCAAAGCCACCCATAGAAGAAACACAAACAACTGTGTGGTCATTCTTGCAAAACAACCTCTGATAAAGAAAGAAGAAAATCTCCGAAAAGCATTTAACTACAATACACGTGACGTTTCAAAAAACTAGAATTCTCCGCCGCATTAGAGTCATCACTCAAAACTGTCGGGATACAGGAAAAAACTCAGTAGGAATTAAGACAAACCATAGTGCCACTAACTCGACAGAAGACAAAACCCAAATGACCGCACAAGAACAGACAGTTTTAAAGAAACTCAGAACTAGAGAAGATATTACCATAGTTCCAGTGCACAAAAACGCGCTACGGTAGTTATGAACAAGGAACAATATATCAGGAAAGCAAAGAACTGCTTGAGGATGA]
[+] EMBL CD152740 [TCAAGCAGACGACATAGAGGACAAAGAAACACTCTCAAGGAAAAAAACGAATCAAGATTTCAAAGCCACCCATAGAAGAAACACAAACAACTGTGTGGTCATTCTTGCAAAACAACCTCTGATAAAGAAAGAAGAAAATCTCCGAAAAGCATTTAACTACAATACACGTGACGTTTCAAAAAACTAGAATTCTCCGCCGCATTAGAGTCATCACTCAAAACTGTCGGGATACAGGAAAAAACTCAGTAGGAATTAAGACAAACCATAGTGCCACTAACTCGACAGAAGACAAAACCCAAATGACCGCACAAGAACAGACAGTTTTAAAGAAACTCAGAACTAGAGAAGATATTACCATAGTTCCAGTGCACAAAAACGCGCTACGGTAGTTATGAACAAGGAACAATATATCAGGAAAGCAAAGAACTGCTTGAGGATGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8981#0 -------------------------------------ACCCTGGGCAAGGGTGGNAAATC 23
consensus_8981#2 CTAGTTTTGAAGTTTTATAAAAGCTTGAAGGTCTGATAAAGGAGGTGCAGTTTTATGGTC 60
consensus_8981#1 -----------------------------------------AGAGTGTACTGGTCCACTG 19
consensus_8981#3 ------------------------------------------------------------
consensus_8981#0 AGGGAATATCTCTTTTAAGTGGGCTATTAACATCCCAAACTGTGTTCCCCAATCCCCAAG 83
consensus_8981#2 AGGATATATCTCTTTTAAGTGGGCTATTAACATCNCAAACTGTGTTCCCCAATCCCCAAG 120
consensus_8981#1 GATTCCGTCCTCCTTTGATCTTGCT-CCGACATTTCTC-CTGCTTTGACAAACTT----G 73
consensus_8981#3 ------------------TCAAGCAGACGACATAGAGGACAAAG--AAACACTCTCAAGG 40
** **** * * *
consensus_8981#0 ATGGTTGAGTTTCAGTACTTTGTGTCCCAAAAATGAAAGCAAACGGGAAAT-ACTTTCTC 142
consensus_8981#2 ATGGTTGAGTTTCAGTACTTTGTGTCCCAAAAATGAAAGCAAACGGGAAAT-ACTTTCTC 179
consensus_8981#1 TTTANAGTCCCTTAACATTTGGTTGTCGGACTCTTTGATTGGATTTTTGTTCACTGATTT 133
consensus_8981#3 AAAAAAACGAATCAAGATTTCAAAGCC--ACCCATAGAAGAAACACAAACA-ACTGT--- 94
* * * ** * * * * ***
consensus_8981#0 CAATAATAGTTGATCTTAGATGTCCCAC-ATGCATTTCTTTGGCGATGTTTGGAGAGGAC 201
consensus_8981#2 CAATAATAGTTGATCTTAGATGTCCCAC-ATGCATTTCTTTGGCGATGTTTGGAGAGGAC 238
consensus_8981#1 GTATATCCTTTCATCCTCAAGCAGTTCT-TTGCTTTCCTGATATATTGTTCCTTGTT--C 190
consensus_8981#3 --GTGGTCATTCTTGCAAAACAACCTCTGATAAAGAAAGAAGAAAATCTCCGAAAAGCAT 152
* ** * * * * *
consensus_8981#0 ATATCGACAATTACAGAGTATTTATGAGGTATGA--ATGGGGGTGTAACCCCATGAAGTA 259
consensus_8981#2 ATATCGACAATTACAGAGTATTTATGAGGTATGA--ATGGGGGTGTAACCCCATGAAGTA 296
consensus_8981#1 ATAACTACCGTAGC-GCGTTTTTGTGCACTGGAACTATGGTAATATCTTCTCTAGTTCTG 249
consensus_8981#3 TTAACTACAATACACGTGACGTTTCAAAAAACTA-----GAATTCTCCGCCGCATTAGAG 207
** * ** * * * ** * * * * *
consensus_8981#0 GAATTCTTCTGACTTCATTAGAAATAAACCGTTGTTTAATCCAAATGTT-TATAAAGCCA 318
consensus_8981#2 GAATTTTTCTGACTTCATTAGAAATAAACCGTTGTTTAATCCAAATGTT-TATAAAGCCA 355
consensus_8981#1 AGTTTCTTTAAAACTGTCTGTTCTTGTGCGGTCATTTGGGTTTTGTCTTCTGTCGAGTTA 309
consensus_8981#3 TCATCACTCAAAACTGTCGGGATACAGGAAAAAACTCAGTAGGAAT------TAAGACAA 261
* * * * * * * *
consensus_8981#0 GGAGGAACGACGTCTACTTT---TTCTATTAAATCATTGACAGGTAAAGCGGCAACGATC 375
consensus_8981#2 GGAGGAACGACGTCTACTTT---TTCTATTAAATCATTGACAGGTAAAGCGGCAACGATC 412
consensus_8981#1 GTGGCACTATGGTTTGTCTTGATTCCTACTGAGTTTTTCACTG-TCTTCCAATATTTTTT 368
consensus_8981#3 ACCATAGTGCCACTAACTCGACAGAAGACAAAACC--CAAATGACCGCACAAGAACAGAC 319
* * * * * * *
consensus_8981#0 GATTTCGCAATATCAAATGGATTTT-GATCATTGTTTGACTCTTTTCGAATGCTGGGAGC 434
consensus_8981#2 GATTTCGCAATATCAAATGGATTTT-GATCATTGTTTGACTCTTTTCGAATGCTGAGAGC 471
consensus_8981#1 TATTTCAGAAAAATTTGCGGACTCAAGAAGTTTATCATATTCGTTTTGTAGGCACCTAAC 428
consensus_8981#3 AGTTTTAAAGAAACTCA-GAACTAGAGAAGATA--TTACCATAGTTCCAGTGCACAAAAA 376
*** * * * * * ** * ** ** *
consensus_8981#0 AGAGTTACACTGATAATCCCCAAAACTACGTTTAGTAGGAACACTGAGTTGTACACTGTG 494
consensus_8981#2 ------------------------------------------------------------
consensus_8981#1 GTCTTTCCTCTGAATAGAATTAGTAGTCATCTCATTAAACCAGCAGACTGTTATGTTGCG 488
consensus_8981#3 CGCGCTACGGTAGTTATGAACAAGGAACAATATATCAGGAAAGCAAAGAACTGC-TTGAG 435
consensus_8981#0 CTTAGTATTTATGAACACTGTTTTTATAGCGTAATCAAACAAAGCAGCCAAAGCAGCTTG 554
consensus_8981#2 ------------------------------------------------------------
consensus_8981#1 AATGACCTAGCGGTGTTAAAATTCCC---------------------------------- 514
consensus_8981#3 GATGA------------------------------------------------------- 440
consensus_8981#0 GATACTAATGGAATTGTATTGCACATGGTCATTCAATTGTTTTAGATACTAAAACAGTGA 614
consensus_8981#2 ------------------------------------------------------------
consensus_8981#1 ------------------------------------------------------------
consensus_8981#3 ------------------------------------------------------------
consensus_8981#0 ACATTTTACTTTAATACCTTTTCTAGATGGTTTGCTTGATACCGGAGCTTTTCACTGTCT 674
consensus_8981#2 ------------------------------------------------------------
consensus_8981#1 ------------------------------------------------------------
consensus_8981#3 ------------------------------------------------------------
consensus_8981#0 TCCAATATTTTTTTTATTTCAGAAAAATTTGCGGACTCAAGAAGTTTATCATATTCGTTT 734
consensus_8981#2 ------------------------------------------------------------
consensus_8981#1 ------------------------------------------------------------
consensus_8981#3 ------------------------------------------------------------
consensus_8981#0 TGTAGGCACCTAACGTCTTTCCTCTGAATAGAATTAGTAGTCATCTCATTAAACCAGCAG 794
consensus_8981#2 ------------------------------------------------------------
consensus_8981#1 ------------------------------------------------------------
consensus_8981#3 ------------------------------------------------------------
consensus_8981#0 ACTGTTATGTTGCGAATGACCTAGCGGTGT 824
consensus_8981#2 ------------------------------
consensus_8981#1 ------------------------------
consensus_8981#3 ------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||