These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8985#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 898 fasta sequence [GTGACTTTTAGAGTATCCGAATTTTTCTTACCAGTCAGTCTTCAGTCAGTCTGTCTTCAGTCAGTCTTCAGTAATAAGGATAATTTCCTTCCAGTGAAGGTCCAGCTTCTTTTTGAAAATGTTCACTGATGGTGCTGATACCACTTGTTCTGGGTGGTGCTGTGGGTGATATAATCAATCATAATGATCCTGTGTTTCTAATGATTTGCTTAAAGTTTTTAAATACATGTCCAAAATCCCCTTGTTTGATTACGTCAAATGTTCCAATAGTAATCAGACGTGATACCCTCAGTTTTGGTCCTACGTTTATCAAAAAATCACAATCTTACAAAGAAAGAAGACTGCTAGGTTATTCTCCGGAAAACATGTTTGATATTGCAATTGACGTTGGTCGTTATTCAGAATTTCTACCTTGGTGTAACCAATCAACTGTTTTGGAACAAGGTGAAAATAACATGCTAGCTTGTCTGGGTGTTGGATTTCCTCCACTTAGTGAATCATATATGTCTCGAATAACATTTCAGCGACCGAAGCACTTAAAGTCTGTCGCACAAAATACTGGAATGTTTCATCATTTAATTAATGAATGGTATTTTCATCCAGGTCTCCCAGACAATCCGAATTCTTGTTATGTAGAGTTTTCCGTGGATTTCGAATTTCGTTCACCACTTTATTCAAAAATTGCTGGATTATTTTTTGATCAAGTTGTTACTGTTATGGTAAATGCTTTTATGAATCGTGCTAAAGTACTACATGGTAAACCATCCATTGCTTCTCAAAAGCCAAACATATTAATTTATAATAAATAATACTATAATTTTTATATAGTTGTGATCATTTGTTCAATATATAAGCGAACAGATTATTATTTTTTTGTAAAATTATAAATAAAAACAAC] [+] EMBL CD079048 [GTGACTTTTAGAGTATCCGAATTTTTCTTACCAGTCAGTCTTCAGTCAGTCTGTCTTCAGTCAGTCTTCAGTAATAAGGATAATTTCCTTCCAGTGAAGGTCCAGCTTCTTTTTGAAAATGTTCACTGATGGTGCTGATACCACTTGTTCTGGGTGGTGCTGTGGGTGATATAATCAATCATAATGATCCTGTGTTTCTAATGATTTGCTTAATGTTTTTAAATACATGTCCAAAATCCCCTTGTTTGATTACGTCAAATGTTCCAATAGTAATCAGACGTGATACCCTCAGTTTTGGTCCTACGTTTATCAAAAAATCACAATCTTACAAAGAAAGAAGACTGCTAGGTTATTCTCCGGAAAACATGTTTGATATTGCAATTGACGTTGGTCGTTATTCAGAATTTCTACCTTGGTGTAACCAATCAACTGTTTTGGAACAAGGTGAAAATAACATGCTAGCTTGTCTGGGTGTTGGATTTCCTCCACTTAGTGAATCATATATGTCTCGAATAACATTTCAGCGACCGAAGCACTTANAGTCTGTCGCACANAATACTGGAATGTTTCATCATTTAATTAATGAATGGTATTTTCATCCAGGTCTCCCAGACAATCCGAATTC ] [+] EMBL AI976553 [ GTCTTCAGTAATAAGGATAATTTCCTTCCAGTGAAGGTCCAGCTTCTTTTTGAAAATGTTCACTGATGGTGCTGATACCACTTGTTCTGGGTGGTGCTGTGGGTGATATAATCAATCATAATGATCCTGTGTTTCTAATGATTTGCTTAAAGTTTTTAAATACATGTCCAAAATCCCCTTGTTTGATTACGTCAAATGTTCCAATAGTAATCAGACGTGATACCCTCAGTTTTGGTCCTACGTTTATCAAAAAATCACAATCTTACAAAGAAAGAAGACTGCTAGGTTATTCTCCGGAAAACATGTTTGATATTGCAATTGACGTTGGTCGTTATTCAGAATTTCTACCTTGGTGTAACCAATCAACTGTTTTGGAACAAGGTGAAAATAACATGCTAGCT ] [+] EMBL BF936669 [ ATAATCAATCATAATGATCCTGTGTTTCTAATGATTTGCTTAAAGTTTTTAAATACATGTCCAAAATCCCCTTGTTTGATTACGTCAAATGTTCCAATAGTAATCAGACGTGATACCCTCAGTTTTGGTCCTACGTTTATCAAAAAATCACAATCTTACAAAGAAAGAAGACTGCTAGGTTATTCTCCGGAAAACATGTTTGATATTGCAATTGACGTTGGTCGTTATTCAGAATTTCTACCTTGGTGTAACCAATCAACTGTTTTGGAACAAGGTGAAAATAACATGCTAGCTTGTCTGGGTGTTGGATTTCCTCCACTTAGTGAATCATATATGTCTCGAATAACATTTCAGCGACCGAAGCACTTAAAGTCTGTCGCACAAAATACTGGAATGTTTCATCATTTAATTAATGAATGGTATTTTCATCCAGGTCTCCCAGACAATCCGAATTCTTGTTATGTAGAGTTTTCCGTGGATTTCGAATTTCGTTCACCACTTTATTCAAAAATTGCTGGATTATTTTTTGATCAAGTTGTTACTGTTATGGTAAATGCTTTTATGAATCGTGCTAAAGTACTACATGGTAAACCATCCATTGC ] [+] EMBL AI975591 [ ATAATCAATCATAATGATCCTGTGTTTCTAATGATTTGCTTAAAGTTTTTAAATACATGTCCAAAATCCCCTTGTTTGATTACGTCAAATGTTCCAATAGTAATCAGACGTGATACCCTCAGTTTTGGTCCTACGTTTATCAAAAAATCACAATCTTACAAAGAAAGAAGACTGCTAGGTTATTCTCCGGAAAACATGTTTGATATTGCAATTGACGTTGGTCGTTATTCAGAATTTCTACCTTGGTGTAACCAATCAACTGTTTTGGAACAAGGTGAAAATAACATGCTAGCTTGTCTGGGTGTTGGATTTCCTCCACTTAGTGAATCATATATGTCTCGAATAACATTTCAGCGACCGAAGCACTTAAAGTCTGTCGCACAAAATACTGGAATGTTTCATCATTTAATTAATGAATGGTATTTTCATCCAGGTCTCCCAGACAATCCGAATTCTTGTTATGTAGAGTTTTCCGTGGATTTCGAATTTCGTTCACCACTCTATTCAAAAAT ] [+] EMBL BF936671 [ ATAATCAATCATAATGATCCTGTGTTTCTAATGATTTGCTTAAAGTTTTTAAATACATGTCCAAAATCCCCTTGTTTGATTACGTCAAATGTTCCAATAGTAATCAGACGTGATACCCTCAGTTTTGGGCCTACGTTTATCAAAAAATCACAATCTTACAAAGAAAGAAGACTGCTAGGTTATTCTCCGGAAAACATGTTTGATATTGCAATTGACGTTGGTCGTTATTCAGAATTTCTACCTTGGTGTAACCAATCAACTGTTTTGGAACAAGGTGAAAATAACATGCTAGCTTGTCTGGGTGTTGGATTTCCTCCACTTAGTGAATCATATATGTCTCGAATAACATTTCAGCGACCGAAGCACTTAAAGTCTGTCGCACAAAATACTGGAATGTTTCATCATTTAATTAATGAATGGTATTTTCATCCAGGTCTCCCAGACAATCCGAATTCTTGTTATGTAGAGTTTTCCGTGGATTTCGAATTTCGTTCACCACTTTATTCAAAAATTGCTGGATTATTTTTTGATCAAGTTGTTACTGTTATGGTAAATGCTTTTATGAATCGTGCTAAAGTACTACATGGTAAACCATCCATTGCTTCTCAAAAGCCAAACATATTAATTTATAATAAAT ] [-] EMBL CD073501 [ ACTGCTAGGTTATTCTCCGGAAAACATGTTTGATATTGCAATTGACGTTGGTCGTTATTCAGAATTTCTACCTTGGTGTAACCAATCAACTGTTTTGGAACAAGGTGAAAATAACATGCTAGCTTGTCTGGGTGTTGGATTTCCTCCACTTAGTGAATCATATATGTCTCGAATAACATTTCAGCGACCGAAGCACTTAAAGTCTGTCGCACAAAATACTGGAATGTTTCATCATTTAATTAATGAATGGTATTTTCATCCAGGTCTCCCAGACAATCCGAATTCTTGTTATGTAGAGTTTTCCGTGGATTTCGAATTTCGTTCACCACTTTATTCAAAAATTGCTGGACTATTTTTTGATCAAGTTGTTACTGTTATGGTAAATGCTTTTATGAATCGTGCTAAAGTACTACATGGTAAACCATCCATTGCTTCTCAAAAGCCAAACATATTAATTTATAATAAATAATACTATAATTTTTATATAGTTGTGATCATTTGTTCAATATATAAGCGAACAGATTATTATTTTTTTGTAAAATTATAAATAAAAACAAC] [+] EMBL BF936783 [ GAAAACATGTTTGATATTGCAATTGACGTTGGTCGTTATTCAGAATTTCTACCTTGGTGTAACCAATCAACTGTTTTGGAACAAGGTGAAAATAACATGCTACCTTGTCTGGGTGTTGGATTTCCTCCACTTATTGAATCATATATGTCTCGAATAACATTTCAGCGACCGAAGCACTTAAAGTCTGTCGCACAAAATACTGGAATGTTCCATCATTTAATTAATGAATGGTATTTTCATCCAGGTCTCCCAGACAAT ] consensusID : consensus_8985#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 258 fasta sequence [ATAGATGGGCTGCGTGCACCAATGACAAGAACCCACTTCCTCCAGTTACAAGGCACTTGAGTAATATGGGTCCCCGCTAAACATATGGCTCAGGATACAGCTTAAACTCACAGAATTGCATCCATGCTAAATGCTTAACACTTAACCCCACCGGGATTGTTATGACTGACAAATGACTCCTGTAGTTACGCTCAATACCGCCTTCCATAGGAGTAGCCACCCACCACTAAGCTCAACGACCATATAGGAGACTGAGTG] [+] EMBL CD122566 [ATAGATGGGCTGCGTGCACCAATGACAAGAACCCACTTCCTCCAGTTACAAGGCACTTGAGTAATATGGGTCCCCGCTAAACATATGGCTCAGGATACAGCTTAAACTCACAGAATTGCATCCATGCTAAATGCTTAACACTTAACCCCACCGGGATTGTTATGACTGACAAATGACTCCTGTAGTTACGCTCAATACCGCCTTCCATAGGAGTAGCCACCCACCACTAAGCTCAACGACCATATAGGAGACTGAGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8985#0 GTGACTTTTAGAGTATCCGAATTTTTCTTACCAGTCAGTCTTCAGTCAGTCTGTCTTCAG 60 consensus_8985#1 ------------------------------------------------------------ consensus_8985#0 TCAGTCTTCAGTAATAAGGATAATTTCCTTCCAGTGAAGGTCCAGCTTCTTTTTGAAAAT 120 consensus_8985#1 ------------------------------------------------------------ consensus_8985#0 GTTCACTGATGGTGCTGATACCACTTGTTCTGGGTGGTGCTGTGGGTGATATAATCAATC 180 consensus_8985#1 ------------------------------------------------------------ consensus_8985#0 ATAATGATCCTGTGTTTCTAATGATTTGCTTAAAGTTTTTAAATACATGTCCAAAATCCC 240 consensus_8985#1 -------------------------ATAGATGGGCTGCGTGCACCAATGACAAGAACCCA 35 * * * * * *** * * ** ** consensus_8985#0 CTTGTTTGATTACGTCAAATGTTCCAATAGTAATCAGACGTGATACCCTCAGTTTTGGTC 300 consensus_8985#1 CTTCCTCCAGT-TACAAGGCACTTGAGTAATATGGGTCCCCGCTAAACATA----TGGCT 90 *** * * * * * * ** ** * * ** * * *** consensus_8985#0 CTACGTTTATCAAAAAATCACAATCTTACAAAGAAAGAAGACTGCTAGGTTATTCTCCGG 360 consensus_8985#1 CAGGATACAGCTTAAACTCACAGAATTGCATCCATGCTAAATGCTTAACACTTAACCCCA 150 * * * * *** ***** ** ** * * * ** * ** consensus_8985#0 AAAACATGTTTGATATTG-CAATTGACGTTGGTCGTTATTCAGAATTTCTACCTTGGTGT 419 consensus_8985#1 CCGGGATTGTTATGACTGACAAATGACTCCTGTAGTTACGCTCAATACCGCCTTCCATAG 210 ** ** * ** *** **** ** **** * *** * * * * consensus_8985#0 AACCAATCAACTGTTTTGGAACAAGGTGAAAATAACATGCTAGCTTGTCTGGGTGTTGGA 479 consensus_8985#1 GAGTAGCCACCCACC-----ACTAAGCTCAACGACCATATAGGA--GACTGAGTG----- 258 * * ** * ** * * ** * *** * * *** *** consensus_8985#0 TTTCCTCCACTTAGTGAATCATATATGTCTCGAATAACATTTCAGCGACCGAAGCACTTA 539 consensus_8985#1 ------------------------------------------------------------ consensus_8985#0 AAGTCTGTCGCACAAAATACTGGAATGTTTCATCATTTAATTAATGAATGGTATTTTCAT 599 consensus_8985#1 ------------------------------------------------------------ consensus_8985#0 CCAGGTCTCCCAGACAATCCGAATTCTTGTTATGTAGAGTTTTCCGTGGATTTCGAATTT 659 consensus_8985#1 ------------------------------------------------------------ consensus_8985#0 CGTTCACCACTTTATTCAAAAATTGCTGGATTATTTTTTGATCAAGTTGTTACTGTTATG 719 consensus_8985#1 ------------------------------------------------------------ consensus_8985#0 GTAAATGCTTTTATGAATCGTGCTAAAGTACTACATGGTAAACCATCCATTGCTTCTCAA 779 consensus_8985#1 ------------------------------------------------------------ consensus_8985#0 AAGCCAAACATATTAATTTATAATAAATAATACTATAATTTTTATATAGTTGTGATCATT 839 consensus_8985#1 ------------------------------------------------------------ consensus_8985#0 TGTTCAATATATAAGCGAACAGATTATTATTTTTTTGTAAAATTATAAATAAAAACAAC 898 consensus_8985#1 ----------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||