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Schistosoma mansoni
cluster # 8990 cluster # 8990       Sequences # 8       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8990#0 length = 656 sequences # 2  
consensus_8990#1 length = 613 sequences # 1  
consensus_8990#2 length = 465 sequences # 1  
consensus_8990#3 length = 447 sequences # 4  

consensusID : consensus_8990#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 656
fasta sequence
                              [CTACCGTTCCGAAGAAGGTATTGTTCCTAAAGTTACAATTCTTAAATGATGCTACGGAAGAAATTTTGACACAGAGGTTAAGAAGGGCAGTACAGAAAACATTTAATGCAGCCCGACTTAGTACCGTCTTCTACAACTGCCCCACAATAAGAACTGTTAATAAAGACAGATTGCCTGAATTCGCCACATCTATGTGTATTTACCAATTCAACTGCTCCTGTGGAGCCAGTTATATAGGGCGTACAATTCGGCAAGTTCGTCAACATATAACAGAACACCATCCGTCGTGGTTGACCGAAGGACAGGTAAAAGGGATTATGAGTTCTATTCTCGCTCACTTGGTGGACACAGGTCATCAGGTTGAACTGAATAAAGCTTTTAAGGTTATCTACCCTATTCCATCAAATTTGCCACATGGTTTACGAGCTCGTCTATTACACATAGCTGAAGCCATCGCAATTCATATTCACAAACCGAACCTTTGTATCCAAAAGAAGTTTGTACAACCACTCTCGCTACCTTGGCCATCGGTATAGCGGAGTTTGTAGCATAATTTCGGTAAACAATTATCTTATTCCTTCCATTTTTTGTATTTTTGTATTTTACTTATTCTCGCTATATAGATGATACCTTCATAGTATTAGAAAAAGACATGA]

[-] EMBL CD179013             [CTACCGTTCCGAAGAAGGTATTGTTCCTAAAGTTACAATTCTTAAATGATGCTACGGAAGAAATTTTGACACAGAGGTTAAGAAGGGCAGTACAGAAAACATTTAATGCAGCCCGACTTAGTACCGTCTTCTACAACTGCCCCACAATAAGAACTGTTAATAAAGACAGATTGCCTGAATTCGCCACATCTATGTGTATTTACCAATTCAACTGCTCCTGTGGAGCCAGTTATATAGGGCGTACAATTCGGCAAGTTCGTCAACATATAACAGAACACCATCCGTCGTGGTTGACCGAAGGACAGGTAAAAGGGATTATGAGTTCTATTCTCGCTCACTTGGTGGACACAGGTCATCAGGTTGAACTGAATAAAGCTTTTAAGG                                                                                                                                                                                                                                                                                ]
[+] EMBL CD201838             [                                                                                     GGCAGTACAGAAAACATTTAATGCAGCCCGACTTAGTACCGTCTTCTACAACTGCCCCACAATAAGAACTGTTAATAAAGACAGATTGCCTGAATTCGCCACATCTATGTGTATTTACCAATTCAACTGCTCCTGTGGAGCCAGTTATATAGGGCGTACAATTCGGCAAGTTCGTCAACATATAACAGAACACCATCCGTCGTGGTTGACCGAAGGACAGGTAAAAGGGATTATGAGTTCTATTCTCGCTCACTTGGTGGACACAGGTCATCAGGTTGAACTGAATAAAGCTTTTAAGGTTATCTACCCTATTCCATCAAATTTGCCACATGGTTTACGAGCTCGTCTATTACACATAGCTGAAGCCATCGCAATTCATATTCACAAACCGAACCTTTGTATCCAAAAGAAGTTTGTACAACCACTCTCGCTACCTTGGCCATCGGTATAGCGGAGTTTGTAGCATAATTTCGGTAAACAATTATCTTATTCCTTCCATTTTTTGTATTTTTGTATTTTACTTATTCTCGCTATATAGATGATACCTTCATAGTATTAGAAAAAGACATGA]


>consensus_8990#0 CTACCGTTCCGAAGAAGGTATTGTTCCTAAAGTTACAATTCTTAAATGATGCTACGGAAG AAATTTTGACACAGAGGTTAAGAAGGGCAGTACAGAAAACATTTAATGCAGCCCGACTTA GTACCGTCTTCTACAACTGCCCCACAATAAGAACTGTTAATAAAGACAGATTGCCTGAAT TCGCCACATCTATGTGTATTTACCAATTCAACTGCTCCTGTGGAGCCAGTTATATAGGGC GTACAATTCGGCAAGTTCGTCAACATATAACAGAACACCATCCGTCGTGGTTGACCGAAG GACAGGTAAAAGGGATTATGAGTTCTATTCTCGCTCACTTGGTGGACACAGGTCATCAGG TTGAACTGAATAAAGCTTTTAAGGTTATCTACCCTATTCCATCAAATTTGCCACATGGTT TACGAGCTCGTCTATTACACATAGCTGAAGCCATCGCAATTCATATTCACAAACCGAACC TTTGTATCCAAAAGAAGTTTGTACAACCACTCTCGCTACCTTGGCCATCGGTATAGCGGA GTTTGTAGCATAATTTCGGTAAACAATTATCTTATTCCTTCCATTTTTTGTATTTTTGTA TTTTACTTATTCTCGCTATATAGATGATACCTTCATAGTATTAGAAAAAGACATGA



consensusID : consensus_8990#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 613
fasta sequence
                              [ATCAAGTTGAACTGGATAAAGCTTTTAAGATTATCCACCATATTCCATCAAATTTGCCGCATGCTTTACGAGCTCGTCTTTTGCACATAGCTGAAGATATCGCAATCCATGTTCACAAACCGAACATTTGTATTCAAAAGAAGTTTGTACAACCACTCTCACTACCTTGGCCATCGGTATAGCGGAGTTTGTAGCAGAACTTTGGTAAACAATTATCTTATTCCTTCCATTTTTTTTATTTTACTTATTCTCTACATTTGTCTCTTGATTCTTACATAACTACTATATTACTGACCACTCATCAAAATATTTTGTTAGTTCTTTATTCTCCTTTTATATATTATGCAACACAGCAACAGCTTGATTTTTGAACAATTAATTTGATTTAATAACCAAATTCCAATTAATTAATGTTAGCTTATAATCGACATGTCATTATGTAATTATTACGTAACGTATGTACTCGAAGTGTTATTTCATTATTGTAAATCATATATATGTATTAGTGTAGAGCCATGATGAGAAACTAATTGAAAGGAAATTTCTTCGCTCGATTCGTTTCTTCTTTATTTACCAAATGTCAAAATGGGAATTTTCACTATAAATAAACAAT]

[-] EMBL CD076180             [ATCAAGTTGAACTGGATAAAGCTTTTAAGATTATCCACCATATTCCATCAAATTTGCCGCATGCTTTACGAGCTCGTCTTTTGCACATAGCTGAAGATATCGCAATCCATGTTCACAAACCGAACATTTGTATTCAAAAGAAGTTTGTACAACCACTCTCACTACCTTGGCCATCGGTATAGCGGAGTTTGTAGCAGAACTTTGGTAAACAATTATCTTATTCCTTCCATTTTTTTTATTTTACTTATTCTCTACATTTGTCTCTTGATTCTTACATAACTACTATATTACTGACCACTCATCAAAATATTTTGTTAGTTCTTTATTCTCCTTTTATATATTATGCAACACAGCAACAGCTTGATTTTTGAACAATTAATTTGATTTAATAACCAAATTCCAATTAATTAATGTTAGCTTATAATCGACATGTCATTATGTAATTATTACGTAACGTATGTACTCGAAGTGTTATTTCATTATTGTAAATCATATATATGTATTAGTGTAGAGCCATGATGAGAAACTAATTGAAAGGAAATTTCTTCGCTCGATTCGTTTCTTCTTTATTTACCAAATGTCAAAATGGGAATTTTCACTATAAATAAACAAT]


>consensus_8990#1 ATCAAGTTGAACTGGATAAAGCTTTTAAGATTATCCACCATATTCCATCAAATTTGCCGC ATGCTTTACGAGCTCGTCTTTTGCACATAGCTGAAGATATCGCAATCCATGTTCACAAAC CGAACATTTGTATTCAAAAGAAGTTTGTACAACCACTCTCACTACCTTGGCCATCGGTAT AGCGGAGTTTGTAGCAGAACTTTGGTAAACAATTATCTTATTCCTTCCATTTTTTTTATT TTACTTATTCTCTACATTTGTCTCTTGATTCTTACATAACTACTATATTACTGACCACTC ATCAAAATATTTTGTTAGTTCTTTATTCTCCTTTTATATATTATGCAACACAGCAACAGC TTGATTTTTGAACAATTAATTTGATTTAATAACCAAATTCCAATTAATTAATGTTAGCTT ATAATCGACATGTCATTATGTAATTATTACGTAACGTATGTACTCGAAGTGTTATTTCAT TATTGTAAATCATATATATGTATTAGTGTAGAGCCATGATGAGAAACTAATTGAAAGGAA ATTTCTTCGCTCGATTCGTTTCTTCTTTATTTACCAAATGTCAAAATGGGAATTTTCACT ATAAATAAACAAT



consensusID : consensus_8990#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 465
fasta sequence
                              [AGTGTCAAGTTTGCTCAATAATGAAGGAACGAATCGAGTAAAGAAATTTCTTTCTTATTAGTTTTTCATCATGGCTCTACACTAATACATATGTATGATTTACAATAATGGAATAACACTCTTCGAGTAGATACGTTACGTAATAATAATGTCATGACGTATCGATTATAAACTAATATTATGTAATCGAAAGAAAGAGGATTTATAATAATCAAAGTATTTATTCTAAAATCAAGCAGTTGCTACATTGCATAATATATAAAAAGACAAGGAATAACTAACAAAATATTTTGATGCATGGTCAGTAATATAGTTGTTATGTAAGAATCAAGAAACGAATGTTGATAATAATCAAAATACAAGAATACAAAAAAATGGAAGGAACACAAATATAGTTTACCAAAGTTCTGCTACAAACATCACTACACCGATGGCCAAGGTAGCGAGAGTGGCTGTACGAACTTC]

[+] EMBL CD185178             [AGTGTCAAGTTTGCTCAATAATGAAGGAACGAATCGAGTAAAGAAATTTCTTTCTTATTAGTTTTTCATCATGGCTCTACACTAATACATATGTATGATTTACAATAATGGAATAACACTCTTCGAGTAGATACGTTACGTAATAATAATGTCATGACGTATCGATTATAAACTAATATTATGTAATCGAAAGAAAGAGGATTTATAATAATCAAAGTATTTATTCTAAAATCAAGCAGTTGCTACATTGCATAATATATAAAAAGACAAGGAATAACTAACAAAATATTTTGATGCATGGTCAGTAATATAGTTGTTATGTAAGAATCAAGAAACGAATGTTGATAATAATCAAAATACAAGAATACAAAAAAATGGAAGGAACACAAATATAGTTTACCAAAGTTCTGCTACAAACATCACTACACCGATGGCCAAGGTAGCGAGAGTGGCTGTACGAACTTC]


>consensus_8990#2 AGTGTCAAGTTTGCTCAATAATGAAGGAACGAATCGAGTAAAGAAATTTCTTTCTTATTA GTTTTTCATCATGGCTCTACACTAATACATATGTATGATTTACAATAATGGAATAACACT CTTCGAGTAGATACGTTACGTAATAATAATGTCATGACGTATCGATTATAAACTAATATT ATGTAATCGAAAGAAAGAGGATTTATAATAATCAAAGTATTTATTCTAAAATCAAGCAGT TGCTACATTGCATAATATATAAAAAGACAAGGAATAACTAACAAAATATTTTGATGCATG GTCAGTAATATAGTTGTTATGTAAGAATCAAGAAACGAATGTTGATAATAATCAAAATAC AAGAATACAAAAAAATGGAAGGAACACAAATATAGTTTACCAAAGTTCTGCTACAAACAT CACTACACCGATGGCCAAGGTAGCGAGAGTGGCTGTACGAACTTC



consensusID : consensus_8990#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 447
fasta sequence
                              [AGTACAGAAAACATTTAATGCAGCTCGACTGAGTACCGTCTTCTACAACTGCCCCACAATAAGAACGGTTAATAAAGACAGATTGCCTGAATTCGCCACATCTATGTGTATTTACCAATTCAACTGCTTTATTTGTTCAATTCCTTTCTTATCATTGTCTTAAGACGGTTTATCCATATAAATTGGGTTAGGATCACAATCCGAAGTATTATAATGACTACTGGTCGTTCATCATAAAATCGAATACTCTCCGATTATCGAACAAGTAGGTGTTCTTTCCTCAAACTTACTCATTTTCAGAAATGCAGTGTAATTACCTTCAAAGTAGCAGTCTATATACTTCGTACTAGCCGTATTAAGTTTGATTTACAACTTTATCATCAATATTAAGATGAATGTGTTTCTGTTTTGGTACTTTCGTCGAAATTTAATTCACCATAGCTTTCT]

[+] EMBL CD066397             [AGTACAGAAAACATTTAATGCAGCTCGACTGAGTACCGTCTTCTACAACTGCCCCACAATAAGAACGGTTAATAAAGACAGATTGCCTGAATTCGCCACATCTATGTGTATTTACCAATTCAACTGCTTTATTTGTTCAATTCCTTTCTTATCATTGTCTTAAGACGGTTTATCCATATAAATTGGGTTAGGATCACAATCCGAAGTATTATAATGACTACTGGTCGTTCATCATAAAATCGAATACTCTCCGATTATCGAACAAGTAGGTGTTCTTTCCTCANACTTACTCATTTTCAGAAATGCAGTGTAATTACCTTC AAGTAGCAGTCTATATACTTCGTACTAGCCGTATTAAGTTTGATTTACAACTTTATCATCAATATTAAGATGAATGTGTTTCTGTTTTGGTACTTTCGTCGAAATTTAATTCACCATAGCTTTCT]
[+] EMBL CD067074             [AGTACAGAAAACATTTAATGCAGCTCGACTGAGTACCGTCTTCTACAACTGCCCCACAATAAGAACGGTTAATAAAGACAGATTGCCTGAATTCGCCACATCTATGTGTATTTACCAATTCAACTGCTTTATTTGTTCAATTCCTTTCTTATCATTGTCTTAAGACGGTTTATCCATATAAATTGGGTTAGGATCACAATCCGAAGTATTATAATGACTACTGGTCGTTCATCATAAAATCGAATACTCTCCGATTATCGAACAAGTAGGTGTTCTTTCCTCAAACTTACTCATTTTCAGAAATGCAGTGTAATTACCTTCAAAGTAGCAGTCTATATACTTCGTACTAGCCGTATTAAGTTTGATTTACAACTTTATCAT                                                                  ]
[+] EMBL CD067196             [AGTACAGAAAACATTTAATGCAGCTCGACTGAGTACCGTCTTCTACAACTGCCCCACAATAAGAACGGTTAATAAAGACAGATTGCCTGAATTCGCCACATCTATGTGTATTTACCAATTCAACTGCTTTATTTGTTCAATTCCTTTCTTATCATTGTCTTAAGACGGTTTATCCATATAAATTGGGTTAGGATCACAATCCGAAGTATTATAATGACTACTGGTCGTTCATCATAAAATCGAATACTCTCCGATTATCGAACAAGTAGGTGTTCTTTCCTCAAACTTACTCATTTTCAGAAATGCAGTGTAATTACCTTCAAAGTAGCAGTCTATATACTTCGTACTAGCCGTATTAAGTTTGATTTACAACTTTA                                                                      ]
[+] EMBL CD066557             [AGTACAGAAAACATTTAATGCAGCTCGACTGAGTACCGTCTTCTACAACTGCCCCACAATAAGAACGGTTAATAAAGACAGATTGCCTGAATTCGCCACATCTATGTGTATTTACCAATTCAACTGCTTTATTTGTTCAATACCTTTCTTATCATTGTCTTAAGACGGTGTATCCATATAAATTGGGTTAGGATCACAATCCGAAGTATTATAATGGCTACTGGTCGTTCATCATAAAATCGAATACTCT                                                                                                                                                                                                     ]


>consensus_8990#3 AGTACAGAAAACATTTAATGCAGCTCGACTGAGTACCGTCTTCTACAACTGCCCCACAAT AAGAACGGTTAATAAAGACAGATTGCCTGAATTCGCCACATCTATGTGTATTTACCAATT CAACTGCTTTATTTGTTCAATTCCTTTCTTATCATTGTCTTAAGACGGTTTATCCATATA AATTGGGTTAGGATCACAATCCGAAGTATTATAATGACTACTGGTCGTTCATCATAAAAT CGAATACTCTCCGATTATCGAACAAGTAGGTGTTCTTTCCTCAAACTTACTCATTTTCAG AAATGCAGTGTAATTACCTTCAAAGTAGCAGTCTATATACTTCGTACTAGCCGTATTAAG TTTGATTTACAACTTTATCATCAATATTAAGATGAATGTGTTTCTGTTTTGGTACTTTCG TCGAAATTTAATTCACCATAGCTTTCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8990#0      CTACCGTTCCGAAGAAGGTATTGTTCCTAAAGTTA----CAATTCTTAAATGATGCTACG 56
consensus_8990#1      --ATCAAGTTGAACTGGATAAAGCTTTTAAGATTATCCACCATATTCCATCAAATTTGCC 58
consensus_8990#3      ------------------------------------------------------------
consensus_8990#2      ------------------------------------------------------------
                                                                                  

consensus_8990#0      GAAGAAATTTTGA-CACAGAGGTTAAGAAGGGCAGTACAGAAAACATTTAATGCAGCCCG 115
consensus_8990#1      GCATGCTTTACGAGCTCGTCTTTTGCACATAGCTGAAGATATCGCAATCCATGTTCACAA 118
consensus_8990#3      ---------------------------------AGTACAGAAAACATTTAATGCAGCTCG 27
consensus_8990#2      ---------------------------------AGTGTCAAGTTTGCTCAATAATGAAGG 27
                                                        *     *      *  **        

consensus_8990#0      ACTTAGTACC-GTCTTCTACAACTGCCC-CACAATAAGAACTGTTAATAAAGACA---GA 170
consensus_8990#1      ACCGAACATTTGTATTCAAAAGAAGTTTGTACAACCACTCTCACTACCTTGGCCATCGGT 178
consensus_8990#3      ACTGAGTACC-GTCTTCTACAACTGCCC-CACAATAAGAACGGTTAATAAAGACA---GA 82
consensus_8990#2      AACGAAT------CGAGTAAAGAAATTTCTTTCTTATTAGTTTTTCATCATGGCT----- 76
                      *   *             * *                       *      * *      

consensus_8990#0      TTGCCTGAATTCGC--CACATCTATGTGTATTTACCAATTCAACTGCTCCTGTGGAGCCA 228
consensus_8990#1      ATAGCGGAGTTTGTAGCAGAACTTTG-GTAAACAATTATCTTATTCCTTCCATTTTTTTT 237
consensus_8990#3      TTGCCTGAATTCGC--CACATCTATGTGTATTTACCAATTCAACTGCTT-TATTTGTTCA 139
consensus_8990#2      ----CTACACTAATA-CATATGTATG-ATTTACAATAATGGAATAACACTCTTCGAGTAG 130
                          *     *     ** *  * **  *    *   **   *   *     *       

consensus_8990#0      GTT--ATATAGGGCGTACAATTCGGCAAGTTCGTCAACATATAACAGAACACCATCCGTC 286
consensus_8990#1      ATT--TTACTTATTCTCTACATTTGTCTCTTGATTCTTACATAAC----TACTAT--ATT 289
consensus_8990#3      ATTCCTTTCTTATCATTGTCTTAAGACGGTTTATCCATATAAATTGGGTTAGGAT----C 195
consensus_8990#2      ATACGTTACGTAATAATAATGTCATGACGT--ATCGAT-TATAAACTAATATTAT----- 182
                       *    *              *       *   *      * *       *  **     

consensus_8990#0      GTGGTTGACCGAAGGACAGGTAAAAGGGAT-----TATGAGTTCTATTCTCGCTCACTTG 341
consensus_8990#1      ACTGACCACTCATCAAAATATTTTGTTAGT-----TCTTTATTCTCCTTTTATATATTAT 344
consensus_8990#3      ACAATCCGAAGTATTATAATGACTACTGGT-----CGTTCATCATAAAATCGAATACTCT 250
consensus_8990#2      GTAATCGAAAGAAAGAGGATTTATAATAATCAAAGTATTTATTCTAAAATCAAGCAGTTG 242
                                     *             *       *   *  *    *     * *  

consensus_8990#0      GTGGACACAGGTCATCAGGTTGAACT--GAATAAAGCTTTTAAGGTTATCT--ACCCTAT 397
consensus_8990#1      GCA-ACACAG--CAACAGCTTGATTTTTGAACAATTAATTTGAT-TTAATA--ACCAAAT 398
consensus_8990#3      CCGATTATCG---AACAAGTAGGTGT----------TCTTTCCTCAAACTT--ACTCATT 295
consensus_8990#2      CTA--CATTGCATAATATATAAAAAGACAAGGAATAACTAACAAAATATTTTGATGCATG 300
                            *  *   *  *  *                  *        *     *      

consensus_8990#0      TCCATCAAATTTGCCACATGGTTTACGAGCTCGTCTATTACACATAGCTGAAGCCATCGC 457
consensus_8990#1      TCCAATTAATTAATGTTA--GCTTATAA--TCGAC-ATGTCAT-TATGTAATTATTACGT 452
consensus_8990#3      TTCAGAAATGCAGTGTAATTACCTTCAAAGTAGC--AGTCTATATACTTCGTACTAGCCG 353
consensus_8990#2      GTCAGTAATATAGT--TGTTATGTAAGAA-TCAAGAAACGAATGTTGATAATA--ATCAA 355
                        **   *               *   *  *     *    *  *   *        *  

consensus_8990#0      AATTCATATTCACAAACCGAACCTTTGTATCCAAAAGAAGTTTGTACAACCACTCTCGCT 517
consensus_8990#1      AACGTATGTACTCGAAGTGTTATTTCATTATTGTA--AATCATATATATGTATTAGTGTA 510
consensus_8990#3      TAT---TAAGTTTGATTTACAACTTTATCATCAATATTAAGATGAATGTGTTTCTGTTTT 410
consensus_8990#2      AATACAAGAATACAAAAAAATGGAAGGAACACAAATATAGTTTACCAAAGTTCTGCTACA 415
                       *            *                       *   *                 

consensus_8990#0      ACCTTGGCCATCGGTATAGCGGAGTTTGTAGCATAATTTCGGTAAACAATTATCTTATTC 577
consensus_8990#1      G----AGCCAT-GATGAGAAACTAATTGAAAGGAAATTTCTTCGCTCGATTCGTTTCTTC 565
consensus_8990#3      GG---TACTTTCGTCGAAATTTAATTCACCATAGCTTTCT-------------------- 447
consensus_8990#2      AACATCACTACACCGATGGCCAAGGTAGCGAGAGTGGCTGTACGAACTTC---------- 465
                             *                 *                                  

consensus_8990#0      CTTCCATTTTTTGTATTTTTGTATTTTACTTATTCTCGCTATATAGATGATACCTTCATA 637
consensus_8990#1      TTT--ATTTACCAAATGTCAAAATGGGAATT-TTCACTATAAATAAACAAT--------- 613
consensus_8990#3      ------------------------------------------------------------
consensus_8990#2      ------------------------------------------------------------
                                                                                  

consensus_8990#0      GTATTAGAAAAAGACATGA 656
consensus_8990#1      -------------------
consensus_8990#3      -------------------
consensus_8990#2      -------------------
                                         




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)