These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8990#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 656 fasta sequence [CTACCGTTCCGAAGAAGGTATTGTTCCTAAAGTTACAATTCTTAAATGATGCTACGGAAGAAATTTTGACACAGAGGTTAAGAAGGGCAGTACAGAAAACATTTAATGCAGCCCGACTTAGTACCGTCTTCTACAACTGCCCCACAATAAGAACTGTTAATAAAGACAGATTGCCTGAATTCGCCACATCTATGTGTATTTACCAATTCAACTGCTCCTGTGGAGCCAGTTATATAGGGCGTACAATTCGGCAAGTTCGTCAACATATAACAGAACACCATCCGTCGTGGTTGACCGAAGGACAGGTAAAAGGGATTATGAGTTCTATTCTCGCTCACTTGGTGGACACAGGTCATCAGGTTGAACTGAATAAAGCTTTTAAGGTTATCTACCCTATTCCATCAAATTTGCCACATGGTTTACGAGCTCGTCTATTACACATAGCTGAAGCCATCGCAATTCATATTCACAAACCGAACCTTTGTATCCAAAAGAAGTTTGTACAACCACTCTCGCTACCTTGGCCATCGGTATAGCGGAGTTTGTAGCATAATTTCGGTAAACAATTATCTTATTCCTTCCATTTTTTGTATTTTTGTATTTTACTTATTCTCGCTATATAGATGATACCTTCATAGTATTAGAAAAAGACATGA] [-] EMBL CD179013 [CTACCGTTCCGAAGAAGGTATTGTTCCTAAAGTTACAATTCTTAAATGATGCTACGGAAGAAATTTTGACACAGAGGTTAAGAAGGGCAGTACAGAAAACATTTAATGCAGCCCGACTTAGTACCGTCTTCTACAACTGCCCCACAATAAGAACTGTTAATAAAGACAGATTGCCTGAATTCGCCACATCTATGTGTATTTACCAATTCAACTGCTCCTGTGGAGCCAGTTATATAGGGCGTACAATTCGGCAAGTTCGTCAACATATAACAGAACACCATCCGTCGTGGTTGACCGAAGGACAGGTAAAAGGGATTATGAGTTCTATTCTCGCTCACTTGGTGGACACAGGTCATCAGGTTGAACTGAATAAAGCTTTTAAGG ] [+] EMBL CD201838 [ GGCAGTACAGAAAACATTTAATGCAGCCCGACTTAGTACCGTCTTCTACAACTGCCCCACAATAAGAACTGTTAATAAAGACAGATTGCCTGAATTCGCCACATCTATGTGTATTTACCAATTCAACTGCTCCTGTGGAGCCAGTTATATAGGGCGTACAATTCGGCAAGTTCGTCAACATATAACAGAACACCATCCGTCGTGGTTGACCGAAGGACAGGTAAAAGGGATTATGAGTTCTATTCTCGCTCACTTGGTGGACACAGGTCATCAGGTTGAACTGAATAAAGCTTTTAAGGTTATCTACCCTATTCCATCAAATTTGCCACATGGTTTACGAGCTCGTCTATTACACATAGCTGAAGCCATCGCAATTCATATTCACAAACCGAACCTTTGTATCCAAAAGAAGTTTGTACAACCACTCTCGCTACCTTGGCCATCGGTATAGCGGAGTTTGTAGCATAATTTCGGTAAACAATTATCTTATTCCTTCCATTTTTTGTATTTTTGTATTTTACTTATTCTCGCTATATAGATGATACCTTCATAGTATTAGAAAAAGACATGA] consensusID : consensus_8990#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence [ATCAAGTTGAACTGGATAAAGCTTTTAAGATTATCCACCATATTCCATCAAATTTGCCGCATGCTTTACGAGCTCGTCTTTTGCACATAGCTGAAGATATCGCAATCCATGTTCACAAACCGAACATTTGTATTCAAAAGAAGTTTGTACAACCACTCTCACTACCTTGGCCATCGGTATAGCGGAGTTTGTAGCAGAACTTTGGTAAACAATTATCTTATTCCTTCCATTTTTTTTATTTTACTTATTCTCTACATTTGTCTCTTGATTCTTACATAACTACTATATTACTGACCACTCATCAAAATATTTTGTTAGTTCTTTATTCTCCTTTTATATATTATGCAACACAGCAACAGCTTGATTTTTGAACAATTAATTTGATTTAATAACCAAATTCCAATTAATTAATGTTAGCTTATAATCGACATGTCATTATGTAATTATTACGTAACGTATGTACTCGAAGTGTTATTTCATTATTGTAAATCATATATATGTATTAGTGTAGAGCCATGATGAGAAACTAATTGAAAGGAAATTTCTTCGCTCGATTCGTTTCTTCTTTATTTACCAAATGTCAAAATGGGAATTTTCACTATAAATAAACAAT] [-] EMBL CD076180 [ATCAAGTTGAACTGGATAAAGCTTTTAAGATTATCCACCATATTCCATCAAATTTGCCGCATGCTTTACGAGCTCGTCTTTTGCACATAGCTGAAGATATCGCAATCCATGTTCACAAACCGAACATTTGTATTCAAAAGAAGTTTGTACAACCACTCTCACTACCTTGGCCATCGGTATAGCGGAGTTTGTAGCAGAACTTTGGTAAACAATTATCTTATTCCTTCCATTTTTTTTATTTTACTTATTCTCTACATTTGTCTCTTGATTCTTACATAACTACTATATTACTGACCACTCATCAAAATATTTTGTTAGTTCTTTATTCTCCTTTTATATATTATGCAACACAGCAACAGCTTGATTTTTGAACAATTAATTTGATTTAATAACCAAATTCCAATTAATTAATGTTAGCTTATAATCGACATGTCATTATGTAATTATTACGTAACGTATGTACTCGAAGTGTTATTTCATTATTGTAAATCATATATATGTATTAGTGTAGAGCCATGATGAGAAACTAATTGAAAGGAAATTTCTTCGCTCGATTCGTTTCTTCTTTATTTACCAAATGTCAAAATGGGAATTTTCACTATAAATAAACAAT] consensusID : consensus_8990#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 465 fasta sequence [AGTGTCAAGTTTGCTCAATAATGAAGGAACGAATCGAGTAAAGAAATTTCTTTCTTATTAGTTTTTCATCATGGCTCTACACTAATACATATGTATGATTTACAATAATGGAATAACACTCTTCGAGTAGATACGTTACGTAATAATAATGTCATGACGTATCGATTATAAACTAATATTATGTAATCGAAAGAAAGAGGATTTATAATAATCAAAGTATTTATTCTAAAATCAAGCAGTTGCTACATTGCATAATATATAAAAAGACAAGGAATAACTAACAAAATATTTTGATGCATGGTCAGTAATATAGTTGTTATGTAAGAATCAAGAAACGAATGTTGATAATAATCAAAATACAAGAATACAAAAAAATGGAAGGAACACAAATATAGTTTACCAAAGTTCTGCTACAAACATCACTACACCGATGGCCAAGGTAGCGAGAGTGGCTGTACGAACTTC] [+] EMBL CD185178 [AGTGTCAAGTTTGCTCAATAATGAAGGAACGAATCGAGTAAAGAAATTTCTTTCTTATTAGTTTTTCATCATGGCTCTACACTAATACATATGTATGATTTACAATAATGGAATAACACTCTTCGAGTAGATACGTTACGTAATAATAATGTCATGACGTATCGATTATAAACTAATATTATGTAATCGAAAGAAAGAGGATTTATAATAATCAAAGTATTTATTCTAAAATCAAGCAGTTGCTACATTGCATAATATATAAAAAGACAAGGAATAACTAACAAAATATTTTGATGCATGGTCAGTAATATAGTTGTTATGTAAGAATCAAGAAACGAATGTTGATAATAATCAAAATACAAGAATACAAAAAAATGGAAGGAACACAAATATAGTTTACCAAAGTTCTGCTACAAACATCACTACACCGATGGCCAAGGTAGCGAGAGTGGCTGTACGAACTTC] consensusID : consensus_8990#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 447 fasta sequence [AGTACAGAAAACATTTAATGCAGCTCGACTGAGTACCGTCTTCTACAACTGCCCCACAATAAGAACGGTTAATAAAGACAGATTGCCTGAATTCGCCACATCTATGTGTATTTACCAATTCAACTGCTTTATTTGTTCAATTCCTTTCTTATCATTGTCTTAAGACGGTTTATCCATATAAATTGGGTTAGGATCACAATCCGAAGTATTATAATGACTACTGGTCGTTCATCATAAAATCGAATACTCTCCGATTATCGAACAAGTAGGTGTTCTTTCCTCAAACTTACTCATTTTCAGAAATGCAGTGTAATTACCTTCAAAGTAGCAGTCTATATACTTCGTACTAGCCGTATTAAGTTTGATTTACAACTTTATCATCAATATTAAGATGAATGTGTTTCTGTTTTGGTACTTTCGTCGAAATTTAATTCACCATAGCTTTCT] [+] EMBL CD066397 [AGTACAGAAAACATTTAATGCAGCTCGACTGAGTACCGTCTTCTACAACTGCCCCACAATAAGAACGGTTAATAAAGACAGATTGCCTGAATTCGCCACATCTATGTGTATTTACCAATTCAACTGCTTTATTTGTTCAATTCCTTTCTTATCATTGTCTTAAGACGGTTTATCCATATAAATTGGGTTAGGATCACAATCCGAAGTATTATAATGACTACTGGTCGTTCATCATAAAATCGAATACTCTCCGATTATCGAACAAGTAGGTGTTCTTTCCTCANACTTACTCATTTTCAGAAATGCAGTGTAATTACCTTC AAGTAGCAGTCTATATACTTCGTACTAGCCGTATTAAGTTTGATTTACAACTTTATCATCAATATTAAGATGAATGTGTTTCTGTTTTGGTACTTTCGTCGAAATTTAATTCACCATAGCTTTCT] [+] EMBL CD067074 [AGTACAGAAAACATTTAATGCAGCTCGACTGAGTACCGTCTTCTACAACTGCCCCACAATAAGAACGGTTAATAAAGACAGATTGCCTGAATTCGCCACATCTATGTGTATTTACCAATTCAACTGCTTTATTTGTTCAATTCCTTTCTTATCATTGTCTTAAGACGGTTTATCCATATAAATTGGGTTAGGATCACAATCCGAAGTATTATAATGACTACTGGTCGTTCATCATAAAATCGAATACTCTCCGATTATCGAACAAGTAGGTGTTCTTTCCTCAAACTTACTCATTTTCAGAAATGCAGTGTAATTACCTTCAAAGTAGCAGTCTATATACTTCGTACTAGCCGTATTAAGTTTGATTTACAACTTTATCAT ] [+] EMBL CD067196 [AGTACAGAAAACATTTAATGCAGCTCGACTGAGTACCGTCTTCTACAACTGCCCCACAATAAGAACGGTTAATAAAGACAGATTGCCTGAATTCGCCACATCTATGTGTATTTACCAATTCAACTGCTTTATTTGTTCAATTCCTTTCTTATCATTGTCTTAAGACGGTTTATCCATATAAATTGGGTTAGGATCACAATCCGAAGTATTATAATGACTACTGGTCGTTCATCATAAAATCGAATACTCTCCGATTATCGAACAAGTAGGTGTTCTTTCCTCAAACTTACTCATTTTCAGAAATGCAGTGTAATTACCTTCAAAGTAGCAGTCTATATACTTCGTACTAGCCGTATTAAGTTTGATTTACAACTTTA ] [+] EMBL CD066557 [AGTACAGAAAACATTTAATGCAGCTCGACTGAGTACCGTCTTCTACAACTGCCCCACAATAAGAACGGTTAATAAAGACAGATTGCCTGAATTCGCCACATCTATGTGTATTTACCAATTCAACTGCTTTATTTGTTCAATACCTTTCTTATCATTGTCTTAAGACGGTGTATCCATATAAATTGGGTTAGGATCACAATCCGAAGTATTATAATGGCTACTGGTCGTTCATCATAAAATCGAATACTCT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8990#0 CTACCGTTCCGAAGAAGGTATTGTTCCTAAAGTTA----CAATTCTTAAATGATGCTACG 56 consensus_8990#1 --ATCAAGTTGAACTGGATAAAGCTTTTAAGATTATCCACCATATTCCATCAAATTTGCC 58 consensus_8990#3 ------------------------------------------------------------ consensus_8990#2 ------------------------------------------------------------ consensus_8990#0 GAAGAAATTTTGA-CACAGAGGTTAAGAAGGGCAGTACAGAAAACATTTAATGCAGCCCG 115 consensus_8990#1 GCATGCTTTACGAGCTCGTCTTTTGCACATAGCTGAAGATATCGCAATCCATGTTCACAA 118 consensus_8990#3 ---------------------------------AGTACAGAAAACATTTAATGCAGCTCG 27 consensus_8990#2 ---------------------------------AGTGTCAAGTTTGCTCAATAATGAAGG 27 * * * ** consensus_8990#0 ACTTAGTACC-GTCTTCTACAACTGCCC-CACAATAAGAACTGTTAATAAAGACA---GA 170 consensus_8990#1 ACCGAACATTTGTATTCAAAAGAAGTTTGTACAACCACTCTCACTACCTTGGCCATCGGT 178 consensus_8990#3 ACTGAGTACC-GTCTTCTACAACTGCCC-CACAATAAGAACGGTTAATAAAGACA---GA 82 consensus_8990#2 AACGAAT------CGAGTAAAGAAATTTCTTTCTTATTAGTTTTTCATCATGGCT----- 76 * * * * * * * consensus_8990#0 TTGCCTGAATTCGC--CACATCTATGTGTATTTACCAATTCAACTGCTCCTGTGGAGCCA 228 consensus_8990#1 ATAGCGGAGTTTGTAGCAGAACTTTG-GTAAACAATTATCTTATTCCTTCCATTTTTTTT 237 consensus_8990#3 TTGCCTGAATTCGC--CACATCTATGTGTATTTACCAATTCAACTGCTT-TATTTGTTCA 139 consensus_8990#2 ----CTACACTAATA-CATATGTATG-ATTTACAATAATGGAATAACACTCTTCGAGTAG 130 * * ** * * ** * * ** * * * consensus_8990#0 GTT--ATATAGGGCGTACAATTCGGCAAGTTCGTCAACATATAACAGAACACCATCCGTC 286 consensus_8990#1 ATT--TTACTTATTCTCTACATTTGTCTCTTGATTCTTACATAAC----TACTAT--ATT 289 consensus_8990#3 ATTCCTTTCTTATCATTGTCTTAAGACGGTTTATCCATATAAATTGGGTTAGGAT----C 195 consensus_8990#2 ATACGTTACGTAATAATAATGTCATGACGT--ATCGAT-TATAAACTAATATTAT----- 182 * * * * * * * * ** consensus_8990#0 GTGGTTGACCGAAGGACAGGTAAAAGGGAT-----TATGAGTTCTATTCTCGCTCACTTG 341 consensus_8990#1 ACTGACCACTCATCAAAATATTTTGTTAGT-----TCTTTATTCTCCTTTTATATATTAT 344 consensus_8990#3 ACAATCCGAAGTATTATAATGACTACTGGT-----CGTTCATCATAAAATCGAATACTCT 250 consensus_8990#2 GTAATCGAAAGAAAGAGGATTTATAATAATCAAAGTATTTATTCTAAAATCAAGCAGTTG 242 * * * * * * * * consensus_8990#0 GTGGACACAGGTCATCAGGTTGAACT--GAATAAAGCTTTTAAGGTTATCT--ACCCTAT 397 consensus_8990#1 GCA-ACACAG--CAACAGCTTGATTTTTGAACAATTAATTTGAT-TTAATA--ACCAAAT 398 consensus_8990#3 CCGATTATCG---AACAAGTAGGTGT----------TCTTTCCTCAAACTT--ACTCATT 295 consensus_8990#2 CTA--CATTGCATAATATATAAAAAGACAAGGAATAACTAACAAAATATTTTGATGCATG 300 * * * * * * * * consensus_8990#0 TCCATCAAATTTGCCACATGGTTTACGAGCTCGTCTATTACACATAGCTGAAGCCATCGC 457 consensus_8990#1 TCCAATTAATTAATGTTA--GCTTATAA--TCGAC-ATGTCAT-TATGTAATTATTACGT 452 consensus_8990#3 TTCAGAAATGCAGTGTAATTACCTTCAAAGTAGC--AGTCTATATACTTCGTACTAGCCG 353 consensus_8990#2 GTCAGTAATATAGT--TGTTATGTAAGAA-TCAAGAAACGAATGTTGATAATA--ATCAA 355 ** * * * * * * * * * consensus_8990#0 AATTCATATTCACAAACCGAACCTTTGTATCCAAAAGAAGTTTGTACAACCACTCTCGCT 517 consensus_8990#1 AACGTATGTACTCGAAGTGTTATTTCATTATTGTA--AATCATATATATGTATTAGTGTA 510 consensus_8990#3 TAT---TAAGTTTGATTTACAACTTTATCATCAATATTAAGATGAATGTGTTTCTGTTTT 410 consensus_8990#2 AATACAAGAATACAAAAAAATGGAAGGAACACAAATATAGTTTACCAAAGTTCTGCTACA 415 * * * * consensus_8990#0 ACCTTGGCCATCGGTATAGCGGAGTTTGTAGCATAATTTCGGTAAACAATTATCTTATTC 577 consensus_8990#1 G----AGCCAT-GATGAGAAACTAATTGAAAGGAAATTTCTTCGCTCGATTCGTTTCTTC 565 consensus_8990#3 GG---TACTTTCGTCGAAATTTAATTCACCATAGCTTTCT-------------------- 447 consensus_8990#2 AACATCACTACACCGATGGCCAAGGTAGCGAGAGTGGCTGTACGAACTTC---------- 465 * * consensus_8990#0 CTTCCATTTTTTGTATTTTTGTATTTTACTTATTCTCGCTATATAGATGATACCTTCATA 637 consensus_8990#1 TTT--ATTTACCAAATGTCAAAATGGGAATT-TTCACTATAAATAAACAAT--------- 613 consensus_8990#3 ------------------------------------------------------------ consensus_8990#2 ------------------------------------------------------------ consensus_8990#0 GTATTAGAAAAAGACATGA 656 consensus_8990#1 ------------------- consensus_8990#3 ------------------- consensus_8990#2 ------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||