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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8990#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 656 fasta sequence
[CTACCGTTCCGAAGAAGGTATTGTTCCTAAAGTTACAATTCTTAAATGATGCTACGGAAGAAATTTTGACACAGAGGTTAAGAAGGGCAGTACAGAAAACATTTAATGCAGCCCGACTTAGTACCGTCTTCTACAACTGCCCCACAATAAGAACTGTTAATAAAGACAGATTGCCTGAATTCGCCACATCTATGTGTATTTACCAATTCAACTGCTCCTGTGGAGCCAGTTATATAGGGCGTACAATTCGGCAAGTTCGTCAACATATAACAGAACACCATCCGTCGTGGTTGACCGAAGGACAGGTAAAAGGGATTATGAGTTCTATTCTCGCTCACTTGGTGGACACAGGTCATCAGGTTGAACTGAATAAAGCTTTTAAGGTTATCTACCCTATTCCATCAAATTTGCCACATGGTTTACGAGCTCGTCTATTACACATAGCTGAAGCCATCGCAATTCATATTCACAAACCGAACCTTTGTATCCAAAAGAAGTTTGTACAACCACTCTCGCTACCTTGGCCATCGGTATAGCGGAGTTTGTAGCATAATTTCGGTAAACAATTATCTTATTCCTTCCATTTTTTGTATTTTTGTATTTTACTTATTCTCGCTATATAGATGATACCTTCATAGTATTAGAAAAAGACATGA]
[-] EMBL CD179013 [CTACCGTTCCGAAGAAGGTATTGTTCCTAAAGTTACAATTCTTAAATGATGCTACGGAAGAAATTTTGACACAGAGGTTAAGAAGGGCAGTACAGAAAACATTTAATGCAGCCCGACTTAGTACCGTCTTCTACAACTGCCCCACAATAAGAACTGTTAATAAAGACAGATTGCCTGAATTCGCCACATCTATGTGTATTTACCAATTCAACTGCTCCTGTGGAGCCAGTTATATAGGGCGTACAATTCGGCAAGTTCGTCAACATATAACAGAACACCATCCGTCGTGGTTGACCGAAGGACAGGTAAAAGGGATTATGAGTTCTATTCTCGCTCACTTGGTGGACACAGGTCATCAGGTTGAACTGAATAAAGCTTTTAAGG ]
[+] EMBL CD201838 [ GGCAGTACAGAAAACATTTAATGCAGCCCGACTTAGTACCGTCTTCTACAACTGCCCCACAATAAGAACTGTTAATAAAGACAGATTGCCTGAATTCGCCACATCTATGTGTATTTACCAATTCAACTGCTCCTGTGGAGCCAGTTATATAGGGCGTACAATTCGGCAAGTTCGTCAACATATAACAGAACACCATCCGTCGTGGTTGACCGAAGGACAGGTAAAAGGGATTATGAGTTCTATTCTCGCTCACTTGGTGGACACAGGTCATCAGGTTGAACTGAATAAAGCTTTTAAGGTTATCTACCCTATTCCATCAAATTTGCCACATGGTTTACGAGCTCGTCTATTACACATAGCTGAAGCCATCGCAATTCATATTCACAAACCGAACCTTTGTATCCAAAAGAAGTTTGTACAACCACTCTCGCTACCTTGGCCATCGGTATAGCGGAGTTTGTAGCATAATTTCGGTAAACAATTATCTTATTCCTTCCATTTTTTGTATTTTTGTATTTTACTTATTCTCGCTATATAGATGATACCTTCATAGTATTAGAAAAAGACATGA]
consensusID : consensus_8990#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence
[ATCAAGTTGAACTGGATAAAGCTTTTAAGATTATCCACCATATTCCATCAAATTTGCCGCATGCTTTACGAGCTCGTCTTTTGCACATAGCTGAAGATATCGCAATCCATGTTCACAAACCGAACATTTGTATTCAAAAGAAGTTTGTACAACCACTCTCACTACCTTGGCCATCGGTATAGCGGAGTTTGTAGCAGAACTTTGGTAAACAATTATCTTATTCCTTCCATTTTTTTTATTTTACTTATTCTCTACATTTGTCTCTTGATTCTTACATAACTACTATATTACTGACCACTCATCAAAATATTTTGTTAGTTCTTTATTCTCCTTTTATATATTATGCAACACAGCAACAGCTTGATTTTTGAACAATTAATTTGATTTAATAACCAAATTCCAATTAATTAATGTTAGCTTATAATCGACATGTCATTATGTAATTATTACGTAACGTATGTACTCGAAGTGTTATTTCATTATTGTAAATCATATATATGTATTAGTGTAGAGCCATGATGAGAAACTAATTGAAAGGAAATTTCTTCGCTCGATTCGTTTCTTCTTTATTTACCAAATGTCAAAATGGGAATTTTCACTATAAATAAACAAT]
[-] EMBL CD076180 [ATCAAGTTGAACTGGATAAAGCTTTTAAGATTATCCACCATATTCCATCAAATTTGCCGCATGCTTTACGAGCTCGTCTTTTGCACATAGCTGAAGATATCGCAATCCATGTTCACAAACCGAACATTTGTATTCAAAAGAAGTTTGTACAACCACTCTCACTACCTTGGCCATCGGTATAGCGGAGTTTGTAGCAGAACTTTGGTAAACAATTATCTTATTCCTTCCATTTTTTTTATTTTACTTATTCTCTACATTTGTCTCTTGATTCTTACATAACTACTATATTACTGACCACTCATCAAAATATTTTGTTAGTTCTTTATTCTCCTTTTATATATTATGCAACACAGCAACAGCTTGATTTTTGAACAATTAATTTGATTTAATAACCAAATTCCAATTAATTAATGTTAGCTTATAATCGACATGTCATTATGTAATTATTACGTAACGTATGTACTCGAAGTGTTATTTCATTATTGTAAATCATATATATGTATTAGTGTAGAGCCATGATGAGAAACTAATTGAAAGGAAATTTCTTCGCTCGATTCGTTTCTTCTTTATTTACCAAATGTCAAAATGGGAATTTTCACTATAAATAAACAAT]
consensusID : consensus_8990#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 465 fasta sequence
[AGTGTCAAGTTTGCTCAATAATGAAGGAACGAATCGAGTAAAGAAATTTCTTTCTTATTAGTTTTTCATCATGGCTCTACACTAATACATATGTATGATTTACAATAATGGAATAACACTCTTCGAGTAGATACGTTACGTAATAATAATGTCATGACGTATCGATTATAAACTAATATTATGTAATCGAAAGAAAGAGGATTTATAATAATCAAAGTATTTATTCTAAAATCAAGCAGTTGCTACATTGCATAATATATAAAAAGACAAGGAATAACTAACAAAATATTTTGATGCATGGTCAGTAATATAGTTGTTATGTAAGAATCAAGAAACGAATGTTGATAATAATCAAAATACAAGAATACAAAAAAATGGAAGGAACACAAATATAGTTTACCAAAGTTCTGCTACAAACATCACTACACCGATGGCCAAGGTAGCGAGAGTGGCTGTACGAACTTC]
[+] EMBL CD185178 [AGTGTCAAGTTTGCTCAATAATGAAGGAACGAATCGAGTAAAGAAATTTCTTTCTTATTAGTTTTTCATCATGGCTCTACACTAATACATATGTATGATTTACAATAATGGAATAACACTCTTCGAGTAGATACGTTACGTAATAATAATGTCATGACGTATCGATTATAAACTAATATTATGTAATCGAAAGAAAGAGGATTTATAATAATCAAAGTATTTATTCTAAAATCAAGCAGTTGCTACATTGCATAATATATAAAAAGACAAGGAATAACTAACAAAATATTTTGATGCATGGTCAGTAATATAGTTGTTATGTAAGAATCAAGAAACGAATGTTGATAATAATCAAAATACAAGAATACAAAAAAATGGAAGGAACACAAATATAGTTTACCAAAGTTCTGCTACAAACATCACTACACCGATGGCCAAGGTAGCGAGAGTGGCTGTACGAACTTC]
consensusID : consensus_8990#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 447 fasta sequence
[AGTACAGAAAACATTTAATGCAGCTCGACTGAGTACCGTCTTCTACAACTGCCCCACAATAAGAACGGTTAATAAAGACAGATTGCCTGAATTCGCCACATCTATGTGTATTTACCAATTCAACTGCTTTATTTGTTCAATTCCTTTCTTATCATTGTCTTAAGACGGTTTATCCATATAAATTGGGTTAGGATCACAATCCGAAGTATTATAATGACTACTGGTCGTTCATCATAAAATCGAATACTCTCCGATTATCGAACAAGTAGGTGTTCTTTCCTCAAACTTACTCATTTTCAGAAATGCAGTGTAATTACCTTCAAAGTAGCAGTCTATATACTTCGTACTAGCCGTATTAAGTTTGATTTACAACTTTATCATCAATATTAAGATGAATGTGTTTCTGTTTTGGTACTTTCGTCGAAATTTAATTCACCATAGCTTTCT]
[+] EMBL CD066397 [AGTACAGAAAACATTTAATGCAGCTCGACTGAGTACCGTCTTCTACAACTGCCCCACAATAAGAACGGTTAATAAAGACAGATTGCCTGAATTCGCCACATCTATGTGTATTTACCAATTCAACTGCTTTATTTGTTCAATTCCTTTCTTATCATTGTCTTAAGACGGTTTATCCATATAAATTGGGTTAGGATCACAATCCGAAGTATTATAATGACTACTGGTCGTTCATCATAAAATCGAATACTCTCCGATTATCGAACAAGTAGGTGTTCTTTCCTCANACTTACTCATTTTCAGAAATGCAGTGTAATTACCTTC AAGTAGCAGTCTATATACTTCGTACTAGCCGTATTAAGTTTGATTTACAACTTTATCATCAATATTAAGATGAATGTGTTTCTGTTTTGGTACTTTCGTCGAAATTTAATTCACCATAGCTTTCT]
[+] EMBL CD067074 [AGTACAGAAAACATTTAATGCAGCTCGACTGAGTACCGTCTTCTACAACTGCCCCACAATAAGAACGGTTAATAAAGACAGATTGCCTGAATTCGCCACATCTATGTGTATTTACCAATTCAACTGCTTTATTTGTTCAATTCCTTTCTTATCATTGTCTTAAGACGGTTTATCCATATAAATTGGGTTAGGATCACAATCCGAAGTATTATAATGACTACTGGTCGTTCATCATAAAATCGAATACTCTCCGATTATCGAACAAGTAGGTGTTCTTTCCTCAAACTTACTCATTTTCAGAAATGCAGTGTAATTACCTTCAAAGTAGCAGTCTATATACTTCGTACTAGCCGTATTAAGTTTGATTTACAACTTTATCAT ]
[+] EMBL CD067196 [AGTACAGAAAACATTTAATGCAGCTCGACTGAGTACCGTCTTCTACAACTGCCCCACAATAAGAACGGTTAATAAAGACAGATTGCCTGAATTCGCCACATCTATGTGTATTTACCAATTCAACTGCTTTATTTGTTCAATTCCTTTCTTATCATTGTCTTAAGACGGTTTATCCATATAAATTGGGTTAGGATCACAATCCGAAGTATTATAATGACTACTGGTCGTTCATCATAAAATCGAATACTCTCCGATTATCGAACAAGTAGGTGTTCTTTCCTCAAACTTACTCATTTTCAGAAATGCAGTGTAATTACCTTCAAAGTAGCAGTCTATATACTTCGTACTAGCCGTATTAAGTTTGATTTACAACTTTA ]
[+] EMBL CD066557 [AGTACAGAAAACATTTAATGCAGCTCGACTGAGTACCGTCTTCTACAACTGCCCCACAATAAGAACGGTTAATAAAGACAGATTGCCTGAATTCGCCACATCTATGTGTATTTACCAATTCAACTGCTTTATTTGTTCAATACCTTTCTTATCATTGTCTTAAGACGGTGTATCCATATAAATTGGGTTAGGATCACAATCCGAAGTATTATAATGGCTACTGGTCGTTCATCATAAAATCGAATACTCT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8990#0 CTACCGTTCCGAAGAAGGTATTGTTCCTAAAGTTA----CAATTCTTAAATGATGCTACG 56
consensus_8990#1 --ATCAAGTTGAACTGGATAAAGCTTTTAAGATTATCCACCATATTCCATCAAATTTGCC 58
consensus_8990#3 ------------------------------------------------------------
consensus_8990#2 ------------------------------------------------------------
consensus_8990#0 GAAGAAATTTTGA-CACAGAGGTTAAGAAGGGCAGTACAGAAAACATTTAATGCAGCCCG 115
consensus_8990#1 GCATGCTTTACGAGCTCGTCTTTTGCACATAGCTGAAGATATCGCAATCCATGTTCACAA 118
consensus_8990#3 ---------------------------------AGTACAGAAAACATTTAATGCAGCTCG 27
consensus_8990#2 ---------------------------------AGTGTCAAGTTTGCTCAATAATGAAGG 27
* * * **
consensus_8990#0 ACTTAGTACC-GTCTTCTACAACTGCCC-CACAATAAGAACTGTTAATAAAGACA---GA 170
consensus_8990#1 ACCGAACATTTGTATTCAAAAGAAGTTTGTACAACCACTCTCACTACCTTGGCCATCGGT 178
consensus_8990#3 ACTGAGTACC-GTCTTCTACAACTGCCC-CACAATAAGAACGGTTAATAAAGACA---GA 82
consensus_8990#2 AACGAAT------CGAGTAAAGAAATTTCTTTCTTATTAGTTTTTCATCATGGCT----- 76
* * * * * * *
consensus_8990#0 TTGCCTGAATTCGC--CACATCTATGTGTATTTACCAATTCAACTGCTCCTGTGGAGCCA 228
consensus_8990#1 ATAGCGGAGTTTGTAGCAGAACTTTG-GTAAACAATTATCTTATTCCTTCCATTTTTTTT 237
consensus_8990#3 TTGCCTGAATTCGC--CACATCTATGTGTATTTACCAATTCAACTGCTT-TATTTGTTCA 139
consensus_8990#2 ----CTACACTAATA-CATATGTATG-ATTTACAATAATGGAATAACACTCTTCGAGTAG 130
* * ** * * ** * * ** * * *
consensus_8990#0 GTT--ATATAGGGCGTACAATTCGGCAAGTTCGTCAACATATAACAGAACACCATCCGTC 286
consensus_8990#1 ATT--TTACTTATTCTCTACATTTGTCTCTTGATTCTTACATAAC----TACTAT--ATT 289
consensus_8990#3 ATTCCTTTCTTATCATTGTCTTAAGACGGTTTATCCATATAAATTGGGTTAGGAT----C 195
consensus_8990#2 ATACGTTACGTAATAATAATGTCATGACGT--ATCGAT-TATAAACTAATATTAT----- 182
* * * * * * * * **
consensus_8990#0 GTGGTTGACCGAAGGACAGGTAAAAGGGAT-----TATGAGTTCTATTCTCGCTCACTTG 341
consensus_8990#1 ACTGACCACTCATCAAAATATTTTGTTAGT-----TCTTTATTCTCCTTTTATATATTAT 344
consensus_8990#3 ACAATCCGAAGTATTATAATGACTACTGGT-----CGTTCATCATAAAATCGAATACTCT 250
consensus_8990#2 GTAATCGAAAGAAAGAGGATTTATAATAATCAAAGTATTTATTCTAAAATCAAGCAGTTG 242
* * * * * * * *
consensus_8990#0 GTGGACACAGGTCATCAGGTTGAACT--GAATAAAGCTTTTAAGGTTATCT--ACCCTAT 397
consensus_8990#1 GCA-ACACAG--CAACAGCTTGATTTTTGAACAATTAATTTGAT-TTAATA--ACCAAAT 398
consensus_8990#3 CCGATTATCG---AACAAGTAGGTGT----------TCTTTCCTCAAACTT--ACTCATT 295
consensus_8990#2 CTA--CATTGCATAATATATAAAAAGACAAGGAATAACTAACAAAATATTTTGATGCATG 300
* * * * * * * *
consensus_8990#0 TCCATCAAATTTGCCACATGGTTTACGAGCTCGTCTATTACACATAGCTGAAGCCATCGC 457
consensus_8990#1 TCCAATTAATTAATGTTA--GCTTATAA--TCGAC-ATGTCAT-TATGTAATTATTACGT 452
consensus_8990#3 TTCAGAAATGCAGTGTAATTACCTTCAAAGTAGC--AGTCTATATACTTCGTACTAGCCG 353
consensus_8990#2 GTCAGTAATATAGT--TGTTATGTAAGAA-TCAAGAAACGAATGTTGATAATA--ATCAA 355
** * * * * * * * * *
consensus_8990#0 AATTCATATTCACAAACCGAACCTTTGTATCCAAAAGAAGTTTGTACAACCACTCTCGCT 517
consensus_8990#1 AACGTATGTACTCGAAGTGTTATTTCATTATTGTA--AATCATATATATGTATTAGTGTA 510
consensus_8990#3 TAT---TAAGTTTGATTTACAACTTTATCATCAATATTAAGATGAATGTGTTTCTGTTTT 410
consensus_8990#2 AATACAAGAATACAAAAAAATGGAAGGAACACAAATATAGTTTACCAAAGTTCTGCTACA 415
* * * *
consensus_8990#0 ACCTTGGCCATCGGTATAGCGGAGTTTGTAGCATAATTTCGGTAAACAATTATCTTATTC 577
consensus_8990#1 G----AGCCAT-GATGAGAAACTAATTGAAAGGAAATTTCTTCGCTCGATTCGTTTCTTC 565
consensus_8990#3 GG---TACTTTCGTCGAAATTTAATTCACCATAGCTTTCT-------------------- 447
consensus_8990#2 AACATCACTACACCGATGGCCAAGGTAGCGAGAGTGGCTGTACGAACTTC---------- 465
* *
consensus_8990#0 CTTCCATTTTTTGTATTTTTGTATTTTACTTATTCTCGCTATATAGATGATACCTTCATA 637
consensus_8990#1 TTT--ATTTACCAAATGTCAAAATGGGAATT-TTCACTATAAATAAACAAT--------- 613
consensus_8990#3 ------------------------------------------------------------
consensus_8990#2 ------------------------------------------------------------
consensus_8990#0 GTATTAGAAAAAGACATGA 656
consensus_8990#1 -------------------
consensus_8990#3 -------------------
consensus_8990#2 -------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||