cluster # 8993

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Schistosoma mansoni
cluster # 8993 cluster # 8993 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8993#0 length = 471 sequences # 7

consensus_8993#1 length = 330 sequences # 1

consensusID : consensus_8993#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 471
fasta sequence

                              [ACATTTCTAAGACAGCCTTCACACTCTTCGTGTCCTCAAACTGATCGTTCTGCTAATTCAGCTACTAGTACTAATGGAATTACTAACGATGTTAATTCTGGTGATTGGAGCTCGGCTGCATCGAATCAGCAAACAACGTCTAGTGACATTTGTCCTTTTAGAGGTAGTCGGATTTTCCCCTTGGTATCTTCAGTAGGATCAATTACATCAGCTGACGAGTCTCCATCAGTGCACAATTCACCTGGTGGTTGGCGTGACACGGCTCCATATGTCGTCATATCATCGGACTCCTCTGATGAAGAAACAATAGGTCATAATGAACCGTGTGTAGCTCCTGCTCAATCCAATGTATTGACCTCTGACGATTCAGAACCAGGTCATGAGTCTTCCCCAGATAGTCGAACAAACGGATGTGAATCCACTGCATCTCTTGGTTCGTTGTTTAAGACATTTTCAAATATGCCTTTACAA]

[+] EMBL CD066359             [ACATTTCTAAAACAGCCTTCACACTCTTCGTGTCCTCAAACTGATCGTTCTGCTAATTCAGCTACTAGTACTAATGGAATTACTAACGATGTTAATTCTGGTGATTGGAGCTCGGCTGCATCGAATCAGCAAACAACGTCTAGTGACATTTGTCCTTTTAGAGGTAGTCGGATTTTCCCCTTGGTATCTTCAGTAGGATCAATTACATCAGCTGACGAGTCTCCATCAGTGCACAATTCACCTGGTGGTTGGCGTGACACGGCTCCATATGTCGTCATATCATCGGACTCCTCTGATGAAGAAACAATAGGTCATAATGAACCGTGTGTAGCTCCTGCTCAATCCAATGTATTGACCTCTGACGATTCAAAACCAGGTCATGAGTCTTCCCCAGATAGTCGAACAAACGGATGTGAATCCACTGCATCTCTTGG                                     ]
[+] EMBL CD066555             [ACATTTCTAAGACTGCCTTCACACTCTTCGTGTCCTCAAACTGATCGTTCTGCTAATTCAGCTACTAGTACTAATGGAATTACTAACGATGTTAATTCTGGTGATTGGAGCTCGGCTGCATCGAATCAGCAAACAACGTCTAGTGACATTTGTCCTTTTAGAGGTAGTCGGATTTTCCCCTTGGTATCTTCAGTAGGATCAATTACATCAGCTGACGAGTCTCCATCAGTGCACAATTCACCTGGTGGTTGGCGTGACACGGCTCCATATGTCGTCATATCATCGGACTCCTCTGATGAAGAAACAATAGGTCATAATGAACCGTGCGTAGCTCCTGCTCAATCCAATATATTGACCTCTGACGATTCAGAACCAGGTCATGAGTCTTCCCCAGATAGTCGAACAAACGGATGTGAATCCACTGCATC                                           ]
[+] EMBL CD066360             [ACATTTCTAAGACAGCCTTCACACTCTTCGTGTCCTCAAACTGATCGTTCTGCTAATTCAGCTACTAGTACTAATGGAATTACTAACGATGTTAATTCTGGTGATTGGAGCTCGGCTGCATCGAATCAGCAAACAACGTCTAGTGACATTTGTCCTTTTAGAGGTAGTCGGATTTTCCCCTTGGTATCTTCAGTAGGATCAATTACATCAGCTGACGAGTCTCCATCAGTGCACAATTCACCTGGTGGTTGGCGTGACACGGCTCCATATGTCGTCATATCATCGGACTCCTCTGATGAAGAAACAATAGGTCATAATGAACCGTGTGTAGCTCCTGCTCAATCCAATGTATTGACCTCTGACGATTCAGAACCAGGTCATGAGTCTTCCCCAGATAGTCGAACAAACGGATGTGAATCCACTGC                                              ]
[+] EMBL CD066696             [ACATTTCTAAGACAGCCTTCACACTCTTCGTGTCCTCAAACTGATCGTTCTGCTAATTCAGCTACTAGTACTAATGGAATTACTAACGATGTTAATTCTGGTGATTGGAGCTCGGCTGCATCGAATCAGCAAACAACGTCTAGTGACATTTGTCCTTTTAGAGGTAGTCGGATTTTCCCCTTGGTATCTTCAGTAGGATCAATTACATCAGCTGACGAGTCTCCATCAGTGCACAATTCACCTGGTGGTTGGCGTGACACGGCTCCATATGTCGTCATATCATCGGACTCCTCTGATGAAGAAACAATATGTCATAATGAACCGTGTGTAGCTCCTGCTCAATCCAATGTATTGACCTCTGACGATTCACAACCAGGTCAT                                                                                          ]
[+] EMBL CD066554             [ACATTTCTAAGACTGCCTTCACACTCTTCGTGTCCTCAAACTGATCGTTCTGCTAATTCAGCTACTAGTACTAATGGAATTACTAACGATGTTAATTCTGGTGATTGGAGCTCGGCTGCATCTAATCANCAAACAACGTCTAGTGACATTTGTCCTTTTAGAGGTAGTCGGATTTTCCCCTTGGTATCTTCAGTAGGATCAATTACATCAGCTGACGAGTCTTCATCAGTGCACA                                                                                                                                                                                                                                            ]
[+] EMBL CD066556             [    TTCTAAGACTGCCTTCACACTCTTCGTGTCCTCAAACTGGTCGTTCTGCTAATTCAGCTACTAGTACTAATGGAATTACTAACGATGTTAATTCTGGTGATTGGAGCTCGGCTGCATCGAATCAGCAAACAACGTCTAGTGACATTTGTCCTTTTAGAGGTAGTCGGATTTTCCCCTTGGTATCTTCAGTAGGATCAATTACATCAGCTGACGAGTCTGCATCAGTGCACAATTCACCTGGTGGTTGGCGTGACACGGCTCCATATGTCGTCATATCATCGGACTCCTCTGATGAAGAAACAATAGGTCATAATGAACCGTGcg                                                                                                                                               ]
[-] EMBL CD167589             [                                                                                                                                           CTAGTGACATTTGTCCTTTTAGAGGTAGTCGGATTTTCCCCTTGGTATCTTCAGTAGGATCAATTACATCAGCTGACGAGTCTCCATCAGTGCACAATTCACCTGGTGGTTGGCGTGACACGGCTCCATATGTCGTCATATCATCGGACTCCTCTGATGAAGAAACAATAGGTCATAATGAACCGTGTGTAGCTCCTGCTCAATCCAATGTATTGACCTCTGACGATTCAGAACCAGGTCATGAGTCTTCCCCAGATAGTCGAAC AACGGATGTGAATCCACTGCGTCTCTTGGTTCGTTGTTTAAGACATTTTCAAATATGCCTTTACAA]




>consensus_8993#0
ACATTTCTAAGACAGCCTTCACACTCTTCGTGTCCTCAAACTGATCGTTCTGCTAATTCA
GCTACTAGTACTAATGGAATTACTAACGATGTTAATTCTGGTGATTGGAGCTCGGCTGCA
TCGAATCAGCAAACAACGTCTAGTGACATTTGTCCTTTTAGAGGTAGTCGGATTTTCCCC
TTGGTATCTTCAGTAGGATCAATTACATCAGCTGACGAGTCTCCATCAGTGCACAATTCA
CCTGGTGGTTGGCGTGACACGGCTCCATATGTCGTCATATCATCGGACTCCTCTGATGAA
GAAACAATAGGTCATAATGAACCGTGTGTAGCTCCTGCTCAATCCAATGTATTGACCTCT
GACGATTCAGAACCAGGTCATGAGTCTTCCCCAGATAGTCGAACAAACGGATGTGAATCC
ACTGCATCTCTTGGTTCGTTGTTTAAGACATTTTCAAATATGCCTTTACAA

consensusID : consensus_8993#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 330
fasta sequence

                              [CTCATTGCGTTAAACTCTTTATTTTGAGTACTTGTAACTCTCATCTACCAGGAAAATATGAATGCGAAACCACTCTGTAGCTGCTAAATCCCGAAGAGAATTAGGAATGGTAACTTTGAGGACTATTTATAGACCAATATAATACCTAGATTTCTTATTGTATAATTGTTAAGTAGATTAACTATTCATATTCATGTTCCTCTTATTATGAGCTTTATTTTGACCCCCCGTCCATCACAATACCATATATGGTATTGTGATGGATGGGGGGTCAATACATTGGATTGAGCAGGAGCTACACACGGTTCATTATGACCTATTGTTTCTTCA]

[+] EMBL BG931406             [CTCATTGCGTTAAACTCTTTATTTTGAGTACTTGTAACTCTCATCTACCAGGAAAATATGAATGCGAAACCACTCTGTAGCTGCTAAATCCCGAAGAGAATTAGGAATGGTAACTTTGAGGACTATTTATAGACCAATATAATACCTAGATTTCTTATTGTATAATTGTTAAGTAGATTAACTATTCATATTCATGTTCCTCTTATTATGAGCTTTATTTTGACCCCCCGTCCATCACAATACCATATATGGTATTGTGATGGATGGGGGGTCAATACATTGGATTGAGCAGGAGCTACACACGGTTCATTATGACCTATTGTTTCTTCA]




>consensus_8993#1
CTCATTGCGTTAAACTCTTTATTTTGAGTACTTGTAACTCTCATCTACCAGGAAAATATG
AATGCGAAACCACTCTGTAGCTGCTAAATCCCGAAGAGAATTAGGAATGGTAACTTTGAG
GACTATTTATAGACCAATATAATACCTAGATTTCTTATTGTATAATTGTTAAGTAGATTA
ACTATTCATATTCATGTTCCTCTTATTATGAGCTTTATTTTGACCCCCCGTCCATCACAA
TACCATATATGGTATTGTGATGGATGGGGGGTCAATACATTGGATTGAGCAGGAGCTACA
CACGGTTCATTATGACCTATTGTTTCTTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8993#0      ACATTTCTAAGACAGCCTTCACACTCTTCGTGTCCTCAAACTGATCGTTCTGCTAATTCA 60
consensus_8993#1      --------------------------CTCATTGCGTTAAACTCTTTATTTTGAGTACTT- 33
                                                 ** *  * * *****  *  ** **   * *  

consensus_8993#0      GCTACTAGTACTAATGGAATTACTAACGATGTTAATTCTGGTGATTGGAGCTCGG--CTG 118
consensus_8993#1      GTAACTCTCATCTACCAGGAAAATATGAATGCGAAACCACTCTGTAGCTGCTAAATCCCG 93
                      *  ***   *   *       * **   ***  **  *      * *  ***     * *

consensus_8993#0      CATCGAATCAGCAA--ACAACGTCTAGTGACATTTGTCCTTTTAGA-GGTAGTCGGATTT 175
consensus_8993#1      AAGAGAATTAGGAATGGTAACTTTGAGGACTATTTATAGACCAATATAATACCTAGATTT 153
                       *  **** ** **    *** *  **    **** *      * *   **    *****

consensus_8993#0      TCCCCTTGGTATCT-TCAGTAGGATCAATTACATCAGCTGACGAGTCTCCATCAGTGCAC 234
consensus_8993#1      CTTATTGTATAATTGTTAAGTAGATTAACTATTCATATTCATGTTCCTCTTATTATGAGC 213
                           *   **  * * *    *** ** **       * * *   ***      **  *

consensus_8993#0      AATTCACCTGGTGGTTGGCGTGACACGGCTCCATATGTCGTCATATCATCGGACTCCTCT 294
consensus_8993#1      T-TTATTTTGACCCCCCGTCCATCACAATACCATATATGGTATTGTGATG---------- 262
                        **    **       *     ***    ****** * **  * * **           

consensus_8993#0      GATGAAGAAACAATAGGTCATAATGAACCGTGTGTAGCTCCTGCTCAATCCAATGTATTG 354
consensus_8993#1      GATGGGGGGTCAATACATTGGATTGAGCAGGAGCTACACACGGTTCATTATGACCTATTG 322
                      ****  *   *****  *   * *** * *    **    * * *** *   *  *****

consensus_8993#0      ACCTCTGACGATTCAGAACCAGGTCATGAGTCTTCCCCAGATAGTCGAACAAACGGATGT 414
consensus_8993#1      TTTCTTCA---------------------------------------------------- 330
                           * *                                                    

consensus_8993#0      GAATCCACTGCATCTCTTGGTTCGTTGTTTAAGACATTTTCAAATATGCCTTTACAA 471
consensus_8993#1      ---------------------------------------------------------