cluster # 8994

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Schistosoma mansoni
cluster # 8994 cluster # 8994 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8994#0 length = 804 sequences # 7

consensus_8994#1 length = 253 sequences # 1

consensusID : consensus_8994#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 804
fasta sequence

                              [TAAGTTACAGCCAATCAATTTTAAAAATAAACAGCAGGAAAATTCGAAAGACTATTGAAACGCAGGCATTTGTCTACTTTCTACATATTCACGTGAGTTGATTTTGTTTTCTATTATTTTCTTTTCATAGTTCAGATCCATTCTGTTTGTTCCAGTTTATTCCTGTGTATATAATTAGCATTGTAGTCTTATTAATAAAATGCATAAGATGAATGTCCATAATGAATATGATTTTGATCATTATTCTTTGTTATATTCGGATGACGAAAATGAAATCTCATTGGGAGTGAAGCAAATGACAAAGGAGTTTGAGTGTTATTTGACACTGATAGATCACTTAATAATGATGATGGTGATGGGCTGGTGTACAGATTAACTGATGTATTGGAATTTTGACTAGTTGGTGGTAAAGAATCATAAGTCATACT-ACTACTGCTACTACTACTGTTATTTGAATAATCAGATAAATGTGATCCAATTAACAGATTAGATAAATCTGTCATAGAATTATGTAGTGCTCGAGCACGAACAGATCTAGTAAAATATGGTTCTCTGGAAGTTTTATTAACTGAATATGTAACTGTTGGTGATGATGGTTTAACTGCTGCGGCTGCTGCTGATTGATTATTTCGAATGAATAAAGGATCTTGAGAGTACAATGTCGTCATAGGTAGTCGGATTGTCTTTGTTCCTGGAAATTTTGTAGAATGACGACTGGAAGGAGTATTGACAGTTGAATCAATATAATTCGTTTTAGTGAAATAATCACTAGAAGTGGAAGATTTTTGTTTGCATAAGCGATGT]

[+] EMBL CD129397             [TAAGTTACAGCCAATCAATTTTAAAAATAAACAGCAGGAAAATTCGAAAGACTATTGGAACGCAGGCATTTGTCTACTTTCTACATATTCACGTGAGTTGATTTTGGTTTCTATTATTTTCTTTTCATAGTTCAGATCCATTCTGTTTGTTCCAGTTTATTCCTGTGTATATAATTAGCATTGTAGTCTTATTAATAAAATGCATAAGATGAATGTCCATAATGAATATGATTTTGATCATTATTCTTTGTTATATTCGGATGACGAAAATGAAATCTCATTGGGAGTGAAGCAAATGACAAAGGAGTTTGAGTGTTATTTGACACTGATAGATCACTTAATAATGATGATGGTGATGGGCTGGTGTACAGATTAACTGATGTATTGGAATTTTGACTAGTTGGTGGTAAAGAATCATAAGTCATACT ACTACTGCTACTACTACTGTTATTTGAATAATCAGATAAATGTGATCCAATTAACAGATTAGATAAATCTGTCATAGAATTATGTAGTGCTCGAGCACGAACAGATCTAGTAAAATATGGTTCTCTGGAAGTTTTATTAACTGAATATGTAACTGTTGGTGATGATGGTTTAACTGCTGCGGCTGCTGCTGATTGATTATTTCGAATGAATAAAGGATCTTGAGAGTACAATGTCGT                                                                                                                                           ]
[+] EMBL CD066895             [TAAGTTACAGCCAATCAATTTTAAAAATAAACAGCAGGAAAATTCGAAAGACTATTGAAACGCAGGCATTTGTCTACTTTCTACATATTCACGTGAGTTGATTTTGTTTTCTATTATTTTCTTTTCATAGTTCAGATCCATTCTGTTTGTTCCAGTTTATTCCTGTGTATATAATTAGCATTGTAGTCTTATTAATAAAATGCATAAGATGAATGTCCATAATGAATATGCTTTTGATCATTATTCTTTGTTATATTCGGATGACGAAAATGAAATCTCATTGGGAGTGAAGCAAATGACAAAAGAGTTTGAGTGTTATTTGACACTGATAGATCACTTAATAATGATGATGGTGATGGGCTGGTGTACAGATTAACTGATGTATTGCAATTTTGACTAGTTGGTGGTAAAGAATCATAAGTCATACTAACTACTGC                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD066781             [TAAGTTACAGCCAATCAATTTTAAAAATAAACAGCAGGAAAATTCGAAAGACTATTGAAACGCAGGCATTTGTCTACTTTCTACATATTCACGTGAGTTGATTTTGTTTTCTATTATTTTCTTTTCATAGTTCAGATCCATTCTGTTTGTTCCAGTTTATTCCTGTGTATATAATTAGCATTGTAGTCTTATTAATAAAATGCATAAGATGAATGTCCATAATGAATATGCTTTTGATCATTATTCTTTGTTATATTCGGATGACGAAAATGAAATCTCATTGGGAGTGAAGCAAATGACAAAGGAGTTTGAGTGTTATTTGACACTGATAGATCACTTAATAATGATGATGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD067330             [TAAGTTACAGCCAATCAATTTTAAAAATAAACAGCAGGAAAATTCGAAAGACTATTGAAACGCAGGCATTTGTCTACTTTCTACATATTCACGTGAGTTGATTTTGCTTTCTATTATTTTCTTTTCATAGTTCAAATCCATACTGTGTGTTCCAGATTATTCCTGTGTATATAATTAGCATCGTAGACTTATTAATAAAATGCATAAGATGAATGTCCATAATGAATATGATTTTGATCATTATTCTTTGTTATATTCGGATGACGAACAAGAAATCTCATTGGGAGTGAAGCAAATGACAAAc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD066299             [TAAGTTACAGCCAATCAATTTTAAAAATAAACAGCAGGAAAATTCGAAAGACTATTGCAACGCCGGCATTTGTCTACTTTCTACATATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CD067433             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TCAGATAAATGTGATCCAATTAACAGATTAGATAAATCTGTCATAGAATTATGTAGTGCTCGAGCACGAACAGATCTAGTAAAATATGGTTCTCTGGAAGTTTTATTAACTGAATATGTAACTGTTGGTGATGATGGTTTAACTGCTGCGGCTGCTGCTGATTGATTATTTCGAATGAATAAAGGATCTTGAGAGTACAATGTCGTCATAGGTAGTCGGATTGTCTTTGTTCCTGGAAATTTTGTAGAATGACGACTGGAAGGAGTATTGACAGTTGAATCAATATAATTCGTTTTAGTGAAATAATCACTAGAAGTGGAAGATTTTTGTTTGCATAAGCGATGT]
[-] EMBL CD067218             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TTCAGGGAAATGTGGTAGAATGACGACTGGAAGGAGTATTGACAGTTGAATCAATATAATTCGTTTTAGTGAAATAATCACTAGAAGTGGAAGATTTTTGTGTGCATAAGAGATGT]




>consensus_8994#0
TAAGTTACAGCCAATCAATTTTAAAAATAAACAGCAGGAAAATTCGAAAGACTATTGAAA
CGCAGGCATTTGTCTACTTTCTACATATTCACGTGAGTTGATTTTGTTTTCTATTATTTT
CTTTTCATAGTTCAGATCCATTCTGTTTGTTCCAGTTTATTCCTGTGTATATAATTAGCA
TTGTAGTCTTATTAATAAAATGCATAAGATGAATGTCCATAATGAATATGATTTTGATCA
TTATTCTTTGTTATATTCGGATGACGAAAATGAAATCTCATTGGGAGTGAAGCAAATGAC
AAAGGAGTTTGAGTGTTATTTGACACTGATAGATCACTTAATAATGATGATGGTGATGGG
CTGGTGTACAGATTAACTGATGTATTGGAATTTTGACTAGTTGGTGGTAAAGAATCATAA
GTCATACTACTACTGCTACTACTACTGTTATTTGAATAATCAGATAAATGTGATCCAATT
AACAGATTAGATAAATCTGTCATAGAATTATGTAGTGCTCGAGCACGAACAGATCTAGTA
AAATATGGTTCTCTGGAAGTTTTATTAACTGAATATGTAACTGTTGGTGATGATGGTTTA
ACTGCTGCGGCTGCTGCTGATTGATTATTTCGAATGAATAAAGGATCTTGAGAGTACAAT
GTCGTCATAGGTAGTCGGATTGTCTTTGTTCCTGGAAATTTTGTAGAATGACGACTGGAA
GGAGTATTGACAGTTGAATCAATATAATTCGTTTTAGTGAAATAATCACTAGAAGTGGAA
GATTTTTGTTTGCATAAGCGATGT

consensusID : consensus_8994#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 253
fasta sequence

                              [GAATAAGTTACAGCCAATCGATTTTAAAAATAAACAGCAGGAAAATTCGAAAGACTATTGAAACGCAAACATTTGTCTACTTTCTACATATTCACGTGAGTTGATTTTGCTACCTATTATTTTCTTTTCATAGTTCAGATCCATTCTGTTTGATCCACTCTATTCATGAATATGATACTGATCATTATTCTTTGTTATATTCCGATGACGAATATGAAATCTCATTGCGAGTGAAGCAAATGACAAAGGAGTA]

[+] EMBL CD067117             [GAATAAGTTACAGCCAATCGATTTTAAAAATAAACAGCAGGAAAATTCGAAAGACTATTGAAACGCAAACATTTGTCTACTTTCTACATATTCACGTGAGTTGATTTTGCTACCTATTATTTTCTTTTCATAGTTCAGATCCATTCTGTTTGATCCACTCTATTCATGAATATGATACTGATCATTATTCTTTGTTATATTCCGATGACGAATATGAAATCTCATTGCGAGTGAAGCAAATGACAAAGGAGTA]




>consensus_8994#1
GAATAAGTTACAGCCAATCGATTTTAAAAATAAACAGCAGGAAAATTCGAAAGACTATTG
AAACGCAAACATTTGTCTACTTTCTACATATTCACGTGAGTTGATTTTGCTACCTATTAT
TTTCTTTTCATAGTTCAGATCCATTCTGTTTGATCCACTCTATTCATGAATATGATACTG
ATCATTATTCTTTGTTATATTCCGATGACGAATATGAAATCTCATTGCGAGTGAAGCAAA
TGACAAAGGAGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8994#0      ---TAAGTTACAGCCAATCAATTTTAAAAATAAACAGCAGGAAAATTCGAAAGACTATTG 57
consensus_8994#1      GAATAAGTTACAGCCAATCGATTTTAAAAATAAACAGCAGGAAAATTCGAAAGACTATTG 60
                         **************** ****************************************

consensus_8994#0      AAACGCAGGCATTTGTCTACTTTCTACATATTCACGTGAGTTGATTTTGTTTTCTATTAT 117
consensus_8994#1      AAACGCAAACATTTGTCTACTTTCTACATATTCACGTGAGTTGATTTTGCTACCTATTAT 120
                      *******  **************************************** *  *******

consensus_8994#0      TTTCTTTTCATAGTTCAGATCCATTCTGTTTGTTCCAGTTTATTCCTGTGTATATAATTA 177
consensus_8994#1      TTTCTTTTCATAGTTCAGATCCATTCTGTTTGATCCACTCTATTC--------------- 165
                      ******************************** **** * *****               

consensus_8994#0      GCATTGTAGTCTTATTAATAAAATGCATAAGATGAATGTCCATAATGAATATGATTTTGA 237
consensus_8994#1      --------------------------------------------ATGAATATGATACTGA 181
                                                                  ***********  ***

consensus_8994#0      TCATTATTCTTTGTTATATTCGGATGACGAAAATGAAATCTCATTGGGAGTGAAGCAAAT 297
consensus_8994#1      TCATTATTCTTTGTTATATTCCGATGACGAATATGAAATCTCATTGCGAGTGAAGCAAAT 241
                      ********************* ********* ************** *************

consensus_8994#0      GACAAAGGAGTTTGAGTGTTATTTGACACTGATAGATCACTTAATAATGATGATGGTGAT 357
consensus_8994#1      GACAAAGGAGTA------------------------------------------------ 253
                      ***********                                                 

consensus_8994#0      GGGCTGGTGTACAGATTAACTGATGTATTGGAATTTTGACTAGTTGGTGGTAAAGAATCA 417
consensus_8994#1      ------------------------------------------------------------
                                                                                  

consensus_8994#0      TAAGTCATACTACTACTGCTACTACTACTGTTATTTGAATAATCAGATAAATGTGATCCA 477
consensus_8994#1      ------------------------------------------------------------
                                                                                  

consensus_8994#0      ATTAACAGATTAGATAAATCTGTCATAGAATTATGTAGTGCTCGAGCACGAACAGATCTA 537
consensus_8994#1      ------------------------------------------------------------
                                                                                  

consensus_8994#0      GTAAAATATGGTTCTCTGGAAGTTTTATTAACTGAATATGTAACTGTTGGTGATGATGGT 597
consensus_8994#1      ------------------------------------------------------------
                                                                                  

consensus_8994#0      TTAACTGCTGCGGCTGCTGCTGATTGATTATTTCGAATGAATAAAGGATCTTGAGAGTAC 657
consensus_8994#1      ------------------------------------------------------------
                                                                                  

consensus_8994#0      AATGTCGTCATAGGTAGTCGGATTGTCTTTGTTCCTGGAAATTTTGTAGAATGACGACTG 717
consensus_8994#1      ------------------------------------------------------------
                                                                                  

consensus_8994#0      GAAGGAGTATTGACAGTTGAATCAATATAATTCGTTTTAGTGAAATAATCACTAGAAGTG 777
consensus_8994#1      ------------------------------------------------------------
                                                                                  

consensus_8994#0      GAAGATTTTTGTTTGCATAAGCGATGT 804
consensus_8994#1      ---------------------------