These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8995#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 633 fasta sequence [CTACCAGCCAAAATGAACCCAACAGATATCACAGCAGCATACACAGACCTTCTTATAGCTGTCACTTCATCAACGATCGAAGAAATCAGGATGACCGATCATCAGACAAATTAAGGGTGGGAAAGCAGAGGAACCTGACAATATATCAGTTGAAACACTGAAGTCAGACATAGAAGTGACTGCAAACATGCTCCACATTCTGTAAAGAAAGATTTAGGAGGAAGAACGAATACCAACATGATAGAAAGAAAGATAACTCATCAAGATACCAAGGAAAAGGGATTTCAGCAATCGTGAGAACTACACAGGCATCACACTACTATCAGTATCAGGAGAAGTTTTCAACAGAGTGTTGTTGAACCGGATGAAAGATTAGGTGAACGCCCAACTTCGAGGCCAACAGGATCAATCATGTGCCAACCAAATTGTTTCACTACAGATGATTGTTGAACAAATGATTAAGTGGAACTGATCACTATACATCAACTTCCTTGATTATAGGGAAGTATTTGACAGTGTGGATAAGAGGATATTATTGAACCTTCTTCGACACTATGGTTTACTTGAGAAGATCCTCAACATTACACGGAATTCATACGACGGACTACACTGCGAATTCTTGTATGGAGTACA] [+] EMBL CD086173 [CTACCAGCCAAAATGAACCCAACAGATATCACAGCAGCATACACAGACCTTCTTATAGCTGTCACTTCATCAACGATCGAAGAAATCAGGATGACCGATCATCAGACAAATTAAGGGTGGGAAAGCAGAGGAACCTGACAATATATCAGTTGAAACACTGAAGTCAGACATAGAAGTGACTGCAAACATGCTCCACATTCTGTAAAGAAAGATTTAGGAGGAAGAACGAATACCAACATGATAGAAAGAAAGATAACTCATCAAGATACCAAGGAAAAGGGATTTCAGCAATCGTGAGAACTACACAGGCATCACACTACTATCAGTATCAGGAGAAGTTTTCAACAGAGTGTTGTTGAACCGGATGAAAGATTAGGTGAACGCCCAACTTCGAGGCCAACAGGATCAATCATGTGCCAACCAAATTGTTTCACTACAGATGATTGTTGAACAAATGATTAAGTGGAACTGATCACTATACATCAACTTCCTTGATTATAGGGAAGTATTTGACAGTGTGGATAAGAGGATATTATTGAACCTTCTTCGACACTATGGTTTACTTGAGAAGATCCTCAACATTACACGGAATTCATACGACGGACTACACTGCGAATTCTTGTATGGAGTACA] [+] EMBL CD086005 [aTACCAGCCAAAATGAACCCAACAGATATCACAGCAGCATACACAGACCTTCTTATAGCTGTCACTTCATCAACGATCGAAGAAATCAGGATGACCGATCATCAGACAAATTAAGGGTGGGAAAGCAGAGGAACCTGACAATATATCAGTTGAAACACTGAAGTCAGACATAGAAGTGACTGCAAACATGCTCCACATTCTGTAAAGAAAGATTTAGGAGGAAGAACGAATACCAACATGATAGAAAGAAAGATAACTCATCAAGATACCAAGGAAAAGGGATTTCAGCAATCGTGAGAACTACACAGGCATCACACTACTATCAGTATCAGGAGAAGTTTTCAACAGAGTGTTGTTGAACCGGATGAAAGATTAGGTGAACGCCCAACTTCGAGGCCAACAGGATCAGTCATGTGCCAACCAAATTGTTTCACTACAGATGATTGTTGAACAAATGATTAAGTGGAACTGATCACTATACATCAACTTCCTTGATTATAGGGAAGTATTTGACAGTGTGGATAAGAGGATATTATTGAACTTTCTTCGACACTATGGGTTACTTGAGAAGATCCTCAACATTACACGGAATTCATACGACGGACTACACTGCGAATTCTTGT TGGGGTACA] consensusID : consensus_8995#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 616 fasta sequence [ACTCACTGGACGTCGATCTACATACACAGACCTTCTTATAGCTGTCACTTCATCAACGATCGAAGAAATCAGGATGACCGATCATCAGACAAATTAAGGGTGGGAAAGCAGAGGAACCTGACAATATATCAGTTGAAACACTGAAGTCAGACATAGAAGTGACTGCAAACATGCTCCACATTCTGTAAAGAAAGATTTAGGAGGAAGAACGAATACCAACATGATAGAAAGAAAGATAACTCATCAAGATACCAAGGAAAAGGGATTTCAGCAATCGTGAGAACTACACAGGCATCACACTACTATCAGTATCAGGAGAAGTTTTCAACAGAGTGTTGTTGAACCGGATGAAAGATTAGGTGAACGCCCAACTTCGAGGCCAACAGGATCAATCATGTGCCAACCAAATTGTTTCACTACAGATGATTGTTGAACAAATGATTAAGTGGAACTGATCACTATACATCAACTTCCTTGATTATAGGGAAGTATTTGACAGTGTGGATAAGAGGATATTATTGAACCTTCTTCGACACTATGGTTTACTTGAGAAGATCCTCAACATTACACGGAATTCATACGACGGACTACACTGCGAATTCTTGTATGGAGTACA] [+] EMBL CD086113 [ACTCACTGGACGTCGATCTACATACACAGACCTTCTTATAGCTGTCACTTCATCAACGATCGAAGAAATCAGGATGACCGATCATCAGACAAATTAAGGGTGGGAAAGCAGAGGAACCTGACAATATATCAGTTGAAACACTGAAGTCAGACATAGAAGTGACTGCAAACATGCTCCACATTCTGTAAAGAAAGATTTAGGAGGAAGAACGAATACCAACATGATAGAAAGAAAGATAACTCATCAAGATACCAAGGAAAAGGGATTTCAGCAATCGTGAGAACTACACAGGCATCACACTACTATCAGTATCAGGAGAAGTTTTCAACAGAGTGTTGTTGAACCGGATGAAAGATTAGGTGAACGCCCAACTTCGAGGCCAACAGGATCAATCATGTGCCAACCAAATTGTTTCACTACAGATGATTGTTGAACAAATGATTAAGTGGAACTGATCACTATACATCAACTTCCTTGATTATAGGGAAGTATTTGACAGTGTGGATAAGAGGATATTATTGAACCTTCTTCGACACTATGGTTTACTTGAGAAGATCCTCAACATTACACGGAATTCATACGACGGACTACACTGCGAATTCTTGTATGGAGTACA] [+] EMBL CD086153 [ TAT AGTT AAACACTGAAGTC GACATAGAAGTGACTGCAAACATGCTCCACATTCTGTAAAGAAAGATTTAGGAGGAAGAACGAATACCAACATGATAGAAAGAAAGATAACTCATCAAGATACCAAGGAAAAGGGATTTCAGCAATCGTGAGAACTACACAGGCATCACACTACTATCAGTATCAGGAGAAGTTTTCAACAGAGTGTTGTTGAACCGGATGAAAGATTAGGTGAACGCCCAACTTCGAGGCCAACAGGATCAATCATGTGCCAACCGAATTGTTTCACTACAGATGATTGTTGAACAAATGATTAAGTGGAACTGATCACTATACATCAACTTCCTTGATTATAGGGAAGTATTTGACAGTGTGGATAAGAGGATATTATTGAACCTTCTTCGACACTATGGTTTACTTGAGAAGATCCTCAACATTACACGGAATTCATACGACGGACTACACTGCGAATTCTTGTATGGAGTACA] [+] EMBL CD136716 [ GCAAACATGCTCCACATTCTGTAAAGAAAGATTTAGGAGGAAGAACGAATACCAACATGATGGAAAGAAAGATAACTCATCAAGATACCAAGGAAAAGGGATTTCGGCAATCGTGAGAACCACACAGGCATCACACTACTATCAGTATCAGGAGAAGTTTTCAACAGAGTGTTGTTGAACCGGATGAAAGATTAGGTGAACGCCCAACTTCGAGGCCAACAGGATCAATCATGTGCCAACCAAATTGTTTCACTACAGATGATTGTTGAACGAATGATTAAGTGGAACTGATCACTATACATCAACTTCCTTGATTATAGGGAAGTATTTGACAGTGTGGATAAGAGGATATTATTGAACCTTCTTCGACACTATGGTTTACTTGAGAAGATCCTCAACATTACACGGAATTCATACGACGGACTACACTG ] [-] EMBL CD137199 [ CAAACATGCTCCACATTCTGTAAAGAAAGATTTAGGAGGAAGAACGAATACCAACATGATGGAAAGAAAGATAACTCATCAAGATACCAAGGAAAAGGGATTTCGGCAATCGTGAGAACCACACAGGCATCACACTACTATCAGTATCAGGAGAAGTTTTCAACAGAGTGTTGTTGAACCGGATGAAAGATTAGGTGAACGCCCAACTTCGAGGCCAACAGGATCAATCATGTGCCAACCAAATTGTTTCACTACAGATGATTGTTGAACAAATGATTAAGTGGAACTGATCACTATACATCAACTTCCTTGATTATAGGGAAGTATTTGACAGTGTGGATAAGAGGATATTATTGAACCTTCTTCGACACTATGGTTTACTTGAGAAGATCCTCAACATTACACGGAATTCATACGACGGACTACACTGC ] [+] EMBL CD066294 [ ACTACACAGGCATCACACTACTATCAGTATCAGGAGAAGTTTTCAACAGAGTGTTGTTGAACCGGATGAAAGATTAGGTGAACGCCCAACTTCGAGGCCAACAGGATCAATCATGTGCCAACCAAATTGTTTCACTACAGATGATTGTTGAACAAATGATTAAGTGGAACTGATCACTATGCATCAACTTCCTTGATTATGGGGAAATATTTGACAGTGTGGATAAGAGGATATTATTGAACCTTCTTCGACACTATGGTTTACTTGAGAAGA ] [+] EMBL CD066295 [ ACTACACAGGCATCACACTACTATCAGTATCAGGAGAAGTTTTCAACAGAGTGTTGTTGAACCGGATGAAAGATTAGGTGAACGCCCAACTTCGAGGCCAACAGGATCAATCATGTGCCAACCAAATTGTTTCACTACAGATGATTGTTGAACAAATGATTAAGTGGAACTGATCACTATGCATCAACTTCCTTGATTATGGGGAAATATTTGACAGTGTGGATAAGAGGATATTATTGAACCTTCTTCGACACTATGGTTTACTTGA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8995#0 CTACCAGCCAAAATGAACCCAACAGATATCACAGCAGCATACACAGACCTTCTTATAGCT 60 consensus_8995#1 ----------------ACTCACTGGACGTCG-ATCTACATACACAGACCTTCTTATAGCT 43 ** ** ** ** * * *********************** consensus_8995#0 GTCACTTCATCAACGATCGAAGAAATCAGGATGACCGATCATCAGACAAATTAAGGGTGG 120 consensus_8995#1 GTCACTTCATCAACGATCGAAGAAATCAGGATGACCGATCATCAGACAAATTAAGGGTGG 103 ************************************************************ consensus_8995#0 GAAAGCAGAGGAACCTGACAATATATCAGTTGAAACACTGAAGTCAGACATAGAAGTGAC 180 consensus_8995#1 GAAAGCAGAGGAACCTGACAATATATCAGTTGAAACACTGAAGTCAGACATAGAAGTGAC 163 ************************************************************ consensus_8995#0 TGCAAACATGCTCCACATTCTGTAAAGAAAGATTTAGGAGGAAGAACGAATACCAACATG 240 consensus_8995#1 TGCAAACATGCTCCACATTCTGTAAAGAAAGATTTAGGAGGAAGAACGAATACCAACATG 223 ************************************************************ consensus_8995#0 ATAGAAAGAAAGATAACTCATCAAGATACCAAGGAAAAGGGATTTCAGCAATCGTGAGAA 300 consensus_8995#1 ATAGAAAGAAAGATAACTCATCAAGATACCAAGGAAAAGGGATTTCAGCAATCGTGAGAA 283 ************************************************************ consensus_8995#0 CTACACAGGCATCACACTACTATCAGTATCAGGAGAAGTTTTCAACAGAGTGTTGTTGAA 360 consensus_8995#1 CTACACAGGCATCACACTACTATCAGTATCAGGAGAAGTTTTCAACAGAGTGTTGTTGAA 343 ************************************************************ consensus_8995#0 CCGGATGAAAGATTAGGTGAACGCCCAACTTCGAGGCCAACAGGATCAATCATGTGCCAA 420 consensus_8995#1 CCGGATGAAAGATTAGGTGAACGCCCAACTTCGAGGCCAACAGGATCAATCATGTGCCAA 403 ************************************************************ consensus_8995#0 CCAAATTGTTTCACTACAGATGATTGTTGAACAAATGATTAAGTGGAACTGATCACTATA 480 consensus_8995#1 CCAAATTGTTTCACTACAGATGATTGTTGAACAAATGATTAAGTGGAACTGATCACTATA 463 ************************************************************ consensus_8995#0 CATCAACTTCCTTGATTATAGGGAAGTATTTGACAGTGTGGATAAGAGGATATTATTGAA 540 consensus_8995#1 CATCAACTTCCTTGATTATAGGGAAGTATTTGACAGTGTGGATAAGAGGATATTATTGAA 523 ************************************************************ consensus_8995#0 CCTTCTTCGACACTATGGTTTACTTGAGAAGATCCTCAACATTACACGGAATTCATACGA 600 consensus_8995#1 CCTTCTTCGACACTATGGTTTACTTGAGAAGATCCTCAACATTACACGGAATTCATACGA 583 ************************************************************ consensus_8995#0 CGGACTACACTGCGAATTCTTGTATGGAGTACA 633 consensus_8995#1 CGGACTACACTGCGAATTCTTGTATGGAGTACA 616 ********************************* |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||