cluster # 8995

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Schistosoma mansoni
cluster # 8995 cluster # 8995 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8995#0 length = 633 sequences # 2

consensus_8995#1 length = 616 sequences # 6

consensusID : consensus_8995#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 633
fasta sequence

                              [CTACCAGCCAAAATGAACCCAACAGATATCACAGCAGCATACACAGACCTTCTTATAGCTGTCACTTCATCAACGATCGAAGAAATCAGGATGACCGATCATCAGACAAATTAAGGGTGGGAAAGCAGAGGAACCTGACAATATATCAGTTGAAACACTGAAGTCAGACATAGAAGTGACTGCAAACATGCTCCACATTCTGTAAAGAAAGATTTAGGAGGAAGAACGAATACCAACATGATAGAAAGAAAGATAACTCATCAAGATACCAAGGAAAAGGGATTTCAGCAATCGTGAGAACTACACAGGCATCACACTACTATCAGTATCAGGAGAAGTTTTCAACAGAGTGTTGTTGAACCGGATGAAAGATTAGGTGAACGCCCAACTTCGAGGCCAACAGGATCAATCATGTGCCAACCAAATTGTTTCACTACAGATGATTGTTGAACAAATGATTAAGTGGAACTGATCACTATACATCAACTTCCTTGATTATAGGGAAGTATTTGACAGTGTGGATAAGAGGATATTATTGAACCTTCTTCGACACTATGGTTTACTTGAGAAGATCCTCAACATTACACGGAATTCATACGACGGACTACACTGCGAATTCTTGTATGGAGTACA]

[+] EMBL CD086173             [CTACCAGCCAAAATGAACCCAACAGATATCACAGCAGCATACACAGACCTTCTTATAGCTGTCACTTCATCAACGATCGAAGAAATCAGGATGACCGATCATCAGACAAATTAAGGGTGGGAAAGCAGAGGAACCTGACAATATATCAGTTGAAACACTGAAGTCAGACATAGAAGTGACTGCAAACATGCTCCACATTCTGTAAAGAAAGATTTAGGAGGAAGAACGAATACCAACATGATAGAAAGAAAGATAACTCATCAAGATACCAAGGAAAAGGGATTTCAGCAATCGTGAGAACTACACAGGCATCACACTACTATCAGTATCAGGAGAAGTTTTCAACAGAGTGTTGTTGAACCGGATGAAAGATTAGGTGAACGCCCAACTTCGAGGCCAACAGGATCAATCATGTGCCAACCAAATTGTTTCACTACAGATGATTGTTGAACAAATGATTAAGTGGAACTGATCACTATACATCAACTTCCTTGATTATAGGGAAGTATTTGACAGTGTGGATAAGAGGATATTATTGAACCTTCTTCGACACTATGGTTTACTTGAGAAGATCCTCAACATTACACGGAATTCATACGACGGACTACACTGCGAATTCTTGTATGGAGTACA]
[+] EMBL CD086005             [aTACCAGCCAAAATGAACCCAACAGATATCACAGCAGCATACACAGACCTTCTTATAGCTGTCACTTCATCAACGATCGAAGAAATCAGGATGACCGATCATCAGACAAATTAAGGGTGGGAAAGCAGAGGAACCTGACAATATATCAGTTGAAACACTGAAGTCAGACATAGAAGTGACTGCAAACATGCTCCACATTCTGTAAAGAAAGATTTAGGAGGAAGAACGAATACCAACATGATAGAAAGAAAGATAACTCATCAAGATACCAAGGAAAAGGGATTTCAGCAATCGTGAGAACTACACAGGCATCACACTACTATCAGTATCAGGAGAAGTTTTCAACAGAGTGTTGTTGAACCGGATGAAAGATTAGGTGAACGCCCAACTTCGAGGCCAACAGGATCAGTCATGTGCCAACCAAATTGTTTCACTACAGATGATTGTTGAACAAATGATTAAGTGGAACTGATCACTATACATCAACTTCCTTGATTATAGGGAAGTATTTGACAGTGTGGATAAGAGGATATTATTGAACTTTCTTCGACACTATGGGTTACTTGAGAAGATCCTCAACATTACACGGAATTCATACGACGGACTACACTGCGAATTCTTGT TGGGGTACA]




>consensus_8995#0
CTACCAGCCAAAATGAACCCAACAGATATCACAGCAGCATACACAGACCTTCTTATAGCT
GTCACTTCATCAACGATCGAAGAAATCAGGATGACCGATCATCAGACAAATTAAGGGTGG
GAAAGCAGAGGAACCTGACAATATATCAGTTGAAACACTGAAGTCAGACATAGAAGTGAC
TGCAAACATGCTCCACATTCTGTAAAGAAAGATTTAGGAGGAAGAACGAATACCAACATG
ATAGAAAGAAAGATAACTCATCAAGATACCAAGGAAAAGGGATTTCAGCAATCGTGAGAA
CTACACAGGCATCACACTACTATCAGTATCAGGAGAAGTTTTCAACAGAGTGTTGTTGAA
CCGGATGAAAGATTAGGTGAACGCCCAACTTCGAGGCCAACAGGATCAATCATGTGCCAA
CCAAATTGTTTCACTACAGATGATTGTTGAACAAATGATTAAGTGGAACTGATCACTATA
CATCAACTTCCTTGATTATAGGGAAGTATTTGACAGTGTGGATAAGAGGATATTATTGAA
CCTTCTTCGACACTATGGTTTACTTGAGAAGATCCTCAACATTACACGGAATTCATACGA
CGGACTACACTGCGAATTCTTGTATGGAGTACA

consensusID : consensus_8995#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 616
fasta sequence

                              [ACTCACTGGACGTCGATCTACATACACAGACCTTCTTATAGCTGTCACTTCATCAACGATCGAAGAAATCAGGATGACCGATCATCAGACAAATTAAGGGTGGGAAAGCAGAGGAACCTGACAATATATCAGTTGAAACACTGAAGTCAGACATAGAAGTGACTGCAAACATGCTCCACATTCTGTAAAGAAAGATTTAGGAGGAAGAACGAATACCAACATGATAGAAAGAAAGATAACTCATCAAGATACCAAGGAAAAGGGATTTCAGCAATCGTGAGAACTACACAGGCATCACACTACTATCAGTATCAGGAGAAGTTTTCAACAGAGTGTTGTTGAACCGGATGAAAGATTAGGTGAACGCCCAACTTCGAGGCCAACAGGATCAATCATGTGCCAACCAAATTGTTTCACTACAGATGATTGTTGAACAAATGATTAAGTGGAACTGATCACTATACATCAACTTCCTTGATTATAGGGAAGTATTTGACAGTGTGGATAAGAGGATATTATTGAACCTTCTTCGACACTATGGTTTACTTGAGAAGATCCTCAACATTACACGGAATTCATACGACGGACTACACTGCGAATTCTTGTATGGAGTACA]

[+] EMBL CD086113             [ACTCACTGGACGTCGATCTACATACACAGACCTTCTTATAGCTGTCACTTCATCAACGATCGAAGAAATCAGGATGACCGATCATCAGACAAATTAAGGGTGGGAAAGCAGAGGAACCTGACAATATATCAGTTGAAACACTGAAGTCAGACATAGAAGTGACTGCAAACATGCTCCACATTCTGTAAAGAAAGATTTAGGAGGAAGAACGAATACCAACATGATAGAAAGAAAGATAACTCATCAAGATACCAAGGAAAAGGGATTTCAGCAATCGTGAGAACTACACAGGCATCACACTACTATCAGTATCAGGAGAAGTTTTCAACAGAGTGTTGTTGAACCGGATGAAAGATTAGGTGAACGCCCAACTTCGAGGCCAACAGGATCAATCATGTGCCAACCAAATTGTTTCACTACAGATGATTGTTGAACAAATGATTAAGTGGAACTGATCACTATACATCAACTTCCTTGATTATAGGGAAGTATTTGACAGTGTGGATAAGAGGATATTATTGAACCTTCTTCGACACTATGGTTTACTTGAGAAGATCCTCAACATTACACGGAATTCATACGACGGACTACACTGCGAATTCTTGTATGGAGTACA]
[+] EMBL CD086153             [                                                                                                                              TAT AGTT AAACACTGAAGTC GACATAGAAGTGACTGCAAACATGCTCCACATTCTGTAAAGAAAGATTTAGGAGGAAGAACGAATACCAACATGATAGAAAGAAAGATAACTCATCAAGATACCAAGGAAAAGGGATTTCAGCAATCGTGAGAACTACACAGGCATCACACTACTATCAGTATCAGGAGAAGTTTTCAACAGAGTGTTGTTGAACCGGATGAAAGATTAGGTGAACGCCCAACTTCGAGGCCAACAGGATCAATCATGTGCCAACCGAATTGTTTCACTACAGATGATTGTTGAACAAATGATTAAGTGGAACTGATCACTATACATCAACTTCCTTGATTATAGGGAAGTATTTGACAGTGTGGATAAGAGGATATTATTGAACCTTCTTCGACACTATGGTTTACTTGAGAAGATCCTCAACATTACACGGAATTCATACGACGGACTACACTGCGAATTCTTGTATGGAGTACA]
[+] EMBL CD136716             [                                                                                                                                                                    GCAAACATGCTCCACATTCTGTAAAGAAAGATTTAGGAGGAAGAACGAATACCAACATGATGGAAAGAAAGATAACTCATCAAGATACCAAGGAAAAGGGATTTCGGCAATCGTGAGAACCACACAGGCATCACACTACTATCAGTATCAGGAGAAGTTTTCAACAGAGTGTTGTTGAACCGGATGAAAGATTAGGTGAACGCCCAACTTCGAGGCCAACAGGATCAATCATGTGCCAACCAAATTGTTTCACTACAGATGATTGTTGAACGAATGATTAAGTGGAACTGATCACTATACATCAACTTCCTTGATTATAGGGAAGTATTTGACAGTGTGGATAAGAGGATATTATTGAACCTTCTTCGACACTATGGTTTACTTGAGAAGATCCTCAACATTACACGGAATTCATACGACGGACTACACTG                     ]
[-] EMBL CD137199             [                                                                                                                                                                     CAAACATGCTCCACATTCTGTAAAGAAAGATTTAGGAGGAAGAACGAATACCAACATGATGGAAAGAAAGATAACTCATCAAGATACCAAGGAAAAGGGATTTCGGCAATCGTGAGAACCACACAGGCATCACACTACTATCAGTATCAGGAGAAGTTTTCAACAGAGTGTTGTTGAACCGGATGAAAGATTAGGTGAACGCCCAACTTCGAGGCCAACAGGATCAATCATGTGCCAACCAAATTGTTTCACTACAGATGATTGTTGAACAAATGATTAAGTGGAACTGATCACTATACATCAACTTCCTTGATTATAGGGAAGTATTTGACAGTGTGGATAAGAGGATATTATTGAACCTTCTTCGACACTATGGTTTACTTGAGAAGATCCTCAACATTACACGGAATTCATACGACGGACTACACTGC                    ]
[+] EMBL CD066294             [                                                                                                                                                                                                                                                                                          ACTACACAGGCATCACACTACTATCAGTATCAGGAGAAGTTTTCAACAGAGTGTTGTTGAACCGGATGAAAGATTAGGTGAACGCCCAACTTCGAGGCCAACAGGATCAATCATGTGCCAACCAAATTGTTTCACTACAGATGATTGTTGAACAAATGATTAAGTGGAACTGATCACTATGCATCAACTTCCTTGATTATGGGGAAATATTTGACAGTGTGGATAAGAGGATATTATTGAACCTTCTTCGACACTATGGTTTACTTGAGAAGA                                                             ]
[+] EMBL CD066295             [                                                                                                                                                                                                                                                                                          ACTACACAGGCATCACACTACTATCAGTATCAGGAGAAGTTTTCAACAGAGTGTTGTTGAACCGGATGAAAGATTAGGTGAACGCCCAACTTCGAGGCCAACAGGATCAATCATGTGCCAACCAAATTGTTTCACTACAGATGATTGTTGAACAAATGATTAAGTGGAACTGATCACTATGCATCAACTTCCTTGATTATGGGGAAATATTTGACAGTGTGGATAAGAGGATATTATTGAACCTTCTTCGACACTATGGTTTACTTGA                                                                  ]




>consensus_8995#1
ACTCACTGGACGTCGATCTACATACACAGACCTTCTTATAGCTGTCACTTCATCAACGAT
CGAAGAAATCAGGATGACCGATCATCAGACAAATTAAGGGTGGGAAAGCAGAGGAACCTG
ACAATATATCAGTTGAAACACTGAAGTCAGACATAGAAGTGACTGCAAACATGCTCCACA
TTCTGTAAAGAAAGATTTAGGAGGAAGAACGAATACCAACATGATAGAAAGAAAGATAAC
TCATCAAGATACCAAGGAAAAGGGATTTCAGCAATCGTGAGAACTACACAGGCATCACAC
TACTATCAGTATCAGGAGAAGTTTTCAACAGAGTGTTGTTGAACCGGATGAAAGATTAGG
TGAACGCCCAACTTCGAGGCCAACAGGATCAATCATGTGCCAACCAAATTGTTTCACTAC
AGATGATTGTTGAACAAATGATTAAGTGGAACTGATCACTATACATCAACTTCCTTGATT
ATAGGGAAGTATTTGACAGTGTGGATAAGAGGATATTATTGAACCTTCTTCGACACTATG
GTTTACTTGAGAAGATCCTCAACATTACACGGAATTCATACGACGGACTACACTGCGAAT
TCTTGTATGGAGTACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8995#0      CTACCAGCCAAAATGAACCCAACAGATATCACAGCAGCATACACAGACCTTCTTATAGCT 60
consensus_8995#1      ----------------ACTCACTGGACGTCG-ATCTACATACACAGACCTTCTTATAGCT 43
                                      ** **   **  **  * *  ***********************

consensus_8995#0      GTCACTTCATCAACGATCGAAGAAATCAGGATGACCGATCATCAGACAAATTAAGGGTGG 120
consensus_8995#1      GTCACTTCATCAACGATCGAAGAAATCAGGATGACCGATCATCAGACAAATTAAGGGTGG 103
                      ************************************************************

consensus_8995#0      GAAAGCAGAGGAACCTGACAATATATCAGTTGAAACACTGAAGTCAGACATAGAAGTGAC 180
consensus_8995#1      GAAAGCAGAGGAACCTGACAATATATCAGTTGAAACACTGAAGTCAGACATAGAAGTGAC 163
                      ************************************************************

consensus_8995#0      TGCAAACATGCTCCACATTCTGTAAAGAAAGATTTAGGAGGAAGAACGAATACCAACATG 240
consensus_8995#1      TGCAAACATGCTCCACATTCTGTAAAGAAAGATTTAGGAGGAAGAACGAATACCAACATG 223
                      ************************************************************

consensus_8995#0      ATAGAAAGAAAGATAACTCATCAAGATACCAAGGAAAAGGGATTTCAGCAATCGTGAGAA 300
consensus_8995#1      ATAGAAAGAAAGATAACTCATCAAGATACCAAGGAAAAGGGATTTCAGCAATCGTGAGAA 283
                      ************************************************************

consensus_8995#0      CTACACAGGCATCACACTACTATCAGTATCAGGAGAAGTTTTCAACAGAGTGTTGTTGAA 360
consensus_8995#1      CTACACAGGCATCACACTACTATCAGTATCAGGAGAAGTTTTCAACAGAGTGTTGTTGAA 343
                      ************************************************************

consensus_8995#0      CCGGATGAAAGATTAGGTGAACGCCCAACTTCGAGGCCAACAGGATCAATCATGTGCCAA 420
consensus_8995#1      CCGGATGAAAGATTAGGTGAACGCCCAACTTCGAGGCCAACAGGATCAATCATGTGCCAA 403
                      ************************************************************

consensus_8995#0      CCAAATTGTTTCACTACAGATGATTGTTGAACAAATGATTAAGTGGAACTGATCACTATA 480
consensus_8995#1      CCAAATTGTTTCACTACAGATGATTGTTGAACAAATGATTAAGTGGAACTGATCACTATA 463
                      ************************************************************

consensus_8995#0      CATCAACTTCCTTGATTATAGGGAAGTATTTGACAGTGTGGATAAGAGGATATTATTGAA 540
consensus_8995#1      CATCAACTTCCTTGATTATAGGGAAGTATTTGACAGTGTGGATAAGAGGATATTATTGAA 523
                      ************************************************************

consensus_8995#0      CCTTCTTCGACACTATGGTTTACTTGAGAAGATCCTCAACATTACACGGAATTCATACGA 600
consensus_8995#1      CCTTCTTCGACACTATGGTTTACTTGAGAAGATCCTCAACATTACACGGAATTCATACGA 583
                      ************************************************************

consensus_8995#0      CGGACTACACTGCGAATTCTTGTATGGAGTACA 633
consensus_8995#1      CGGACTACACTGCGAATTCTTGTATGGAGTACA 616
                      *********************************