These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8997#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 723 fasta sequence [TCGTTAACATGGTCCCAATATTTCGGCGTGAAAATGTGGGATGTTAAACTGAGCAGTGCTGGACTGGTGTACGTACATTTTGGGAAAAGAGTACTATCTGTACTGACTGGCCTTGAAATTGGACACGAAGTTCTAGAAAAGATATACATGAAAATATACGAATCGTTCATTTTAGAAATTGATGGGCAGGACAACGGTATTGCACAGTCTAAAGTTCCCTTGAAGTACAATATAGGCACTAGTTTATATTGCAGAGTTCGACGACTTAATCCTTGGTGGAATAACGAGTCAGAAGAATCAGAAACTGCATTCCAAAGAGCAATCAATTTAGTCAGTCGTGAATTCCTTGATACCGTGGACTACTTTACCAATTGCTGGTGGCCTGCACGAAATATTGTAGCTAAAGCAATGAATTGTCGTGGAGATGTAGATTCATCGAAAACTATTATAGTACTAGATAGATCTTGTCCATGGAAGAGCCATCTATTTGACTTGGAGCGTGAAGAACGTGCGGAAACAGTTGTTTATCCAGAACCACTCCATCAAGCAAGTTATCGTCCCATACCAAAGTTTCCCCCTCAAATTCTCTTTGTCATACTACCATCAGATGGTAATTGGGTTGTTCAAGGCGTACCAAAAGACAAGTTCGACATTCGGTTACCATTCCCTAACGACTGGCGTTCACTGCAAGATGATCAATTGTGTGCAATGACGGGAATATCA] [-] EMBL CD147840 [TCGTTAACATGGTCCCAATATTTCGGCGTGAAAATGTGGGATGTTAAACTGAGCAGTGCTGGACTGGTGTACGTACATTTTGGGAAAAGAGTACTATCTGTACTGACTGGCCTTGAAATTGGACACGAAGTTCTAGAAAAGATATACATGAAAATATACGAATCGTTCATTTTAGAAATTGATGGGCAGGACAACGGTATTGCACAGTCTAAAGTTCCCTTGAAGTACAATATAGGCACTAGTTTATATTGCAGAGTTCGACGACTTAATCCTTGGTGGAATAACGAGTCAGAAGAATCAGAAACTGCATTCCAAAGAGCAATCAATTTAGTCAGTCGTGAATTCCTTGATACCGTGGACTACTTTACC ] [-] EMBL CD147297 [ AAAGTTCCCTTGAAGTACAATATAGGCACTAGTTTATATTGCAGAGTTCGACGACTTAATCCTTGGTGGAATAACGAGTCAGAAGAATCAGAAACTGCATTCCAAAGAGCAATCAATTTAGTCAGTCGTGAATTCCTTGATACCGTGGACTACTTTACCAATTGCTGGTGGCCTGCACGAAATATTGTAGCTAAAGCAATGAATTGTCGTGGAGATGTAGATTCATCGAAAACTATTATAGTACTAGATAGATCTTGTCCATGGAAGAGCCATCTATTTGACTTGGAGCGTGAAGAACGTGCGGAAACAGTTGTTTATCCAGAACCACTCCATCAAGCAAGT ] [+] EMBL CD193183 [ CCCTTGAAGTACAATATAGGCACTAGTTTATATTGCAGAGTTCGACGACTTAATCCTTGGTGGAATAACGAGTCAGAAGAATCAGAAACTGCATTCCAAAGAGCAATCAATTTAGTCAGTCGTGAATTCCTTGATACCGTGGACTACTTTACCAATTGCTGGTGGCCTGCACGAAATATTGTAGCTAAAGCAATGAATTGTCGTGGAGATGTAGATTCATCGAAAACTATTATAGTACTAGATAGATCTTGTCCATGGAAGAGCCATCTATTTGACTTGGAGCGTGAAGAACGTGCGGAAACAGTTGTTTATCCAGAACCACTCCATCAAGCAAGTTATCGTCCCATACCAAAGTTTCCCCCTCAAATTCTCTTTGTCATACTACCATCAGATGGTAATTGGGTTGTTCAAGGCGTACCAAAAGACAAGTTCGACATTCGGTTACCATTCCCTAACGACTGGCGTTCACTGCAAGATGATCAATTGTGTGCAATGACGGGAATATCA] [+] EMBL CD162631 [ CTAGTTTATATTGCAGAGTTCGACGACTTAATCCTTGGTGGAATAACGAGTCAGAAGAATCAGAAACTGCATTCCAAAGAGCAATCAATTTAGTCAGTCGTGAATTCCTTGATACCGTGGACTACTTTACCAATTGCTGGTGGCCTGCACGAAATATTGTAGCTAAAGCAATGAATTGTCGTGGAGATGTAGATTCATCGAAAACTATTATAGTACTAGATAGATCTTGTCCATGGAAGAGCCATCTATTTGACTTGGAGCGTGAAGAACGTGCGGAAACAGTTGTTTATCCAGAACCACTCCATCAA ] [+] EMBL BG931093 [ GTGGACTACTTTACCAATTGCTGGTGGCCTGCACGAAATATTGTAGCTAAAGCAATGAATTGTCGTGGAGATGTAGATTCATCGAAAACTATTATAGTACTAGATAGATCTTGTCCATGGAAGAGCCATCTATTTGACTTGGAGCGTGAAGAACGTGCGGAAACAGTTGTTTATCCAGA ] [-] EMBL BG931876 [ tCTGCACGAAATATTGTAGCTAAAGCAATGAATTGTCGTGGAGATGTAGATTCATCGAAAACTATTATAGTATTAGATAGATCTTGTCCATGGAAGAGCCATCTATTTGACTTGGAGCGTGAAGAACGTGCGGAAACAGTTGTTTATCCAGAACCACTCCATCAAGCAAGTTATCGTCCCATACCAAAGTTTCCCCCTCAAATTCTCTTTGTCATACTACCATCAGATGGTAATTGGGTTGTTCAAGGCGTACCAAAAGACAAGTTCGACATTCGGTTACCATTCCCTAACGAC ] consensusID : consensus_8997#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 331 fasta sequence [ATACGAATCGTTCATTTTAGAAATTGATGGGCAGGACAACGGTATTGCACAGTCTAAAGTTCCCTTGAAGTACAATATAGGCACTAGTTTATATTGCAGAGTTCGACGACTTAATCCTTGGTGGAATAACGAGTCAGAAGAATCAGAAACTGCATTCCAAAGAGCAATCAATTTAGTCAGTCGTGAATTCCTTGATACCGTGGACTACTTTACCAATTGCTGGTGGCCTGCACGAAATATTGTAGCTAAAGTTTCCCCCTCAAATTCTCTTTGTCATACTACCATCAGATGGTAATTGNGTTGTTCAAGGCGTACCANAAGACAAGNTCGA] [+] EMBL CD194115 [ATACGAATCGTTCATTTTAGAAATTGATGGGCAGGACAACGGTATTGCACAGTCTAAAGTTCCCTTGAAGTACAATATAGGCACTAGTTTATATTGCAGAGTTCGACGACTTAATCCTTGGTGGAATAACGAGTCAGAAGAATCAGAAACTGCATTCCAAAGAGCAATCAATTTAGTCAGTCGTGAATTCCTTGATACCGTGGACTACTTTACCAATTGCTGGTGGCCTGCACGAAATATTGTAGCTAAAGTTTCCCCCTCAAATTCTCTTTGTCATACTACCATCAGATGGTAATTGNGTTGTTCAAGGCGTACCANAAGACAAGNTCGA] consensusID : consensus_8997#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 290 fasta sequence [AGTCTAAAGTTCCCTTGAAGTGAGTTTTCTTCCACTTTTTATCGTCCAGGTACAATATAGGCACTAGTTTATATTGCAGAGTTCGACGACTTAATCCTTGGTGGATAACGAGTCAGAAGATCAGAAGTATGTTTTTGATTCTAGATTCTTAGTAAGCTCCTGCTTTTGAATATATAACAGCCCCACTGGCGAATCACGTAGAAATTTTGTAGCTCCAAGTCAACCTGACCTTAAATGAGATACAATTTACGTCTTAATAAACACAATCACTGTCTATATTTGTAATACGA] [+] EMBL CD189171 [AGTCTAAAGTTCCCTTGAAGTGAGTTTTCTTCCACTTTTTATCGTCCAGGTACAATATAGGCACTAGTTTATATTGCAGAGTTCGACGACTTAATCCTTGGTGGATAACGAGTCAGAAGATCAGAAGTATGTTTTTGATTCTAGATTCTTAGTAAGCTCCTGCTTTTGAATATATAACAGCCCCACTGGCGAATCACGTAGAAATTTTGTAGCTCCAAGTCAACCTGACCTTAAATGAGATACAATTTACGTCTTAATAAACACAATCACTGTCTATATTTGTAATACGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8997#0 TCGTTAACATGGTCCCAATATTTCGGCGTGAAAATGTGGGATGTTAAACTGAGCAGTGCT 60 consensus_8997#1 ------------------------------------------------------------ consensus_8997#2 ------------------------------------------------------------ consensus_8997#0 GGACTGGTGTACGTACATTTTGGGAAAAGAGTACTATCTGTACTGACTGGCCTTGAAATT 120 consensus_8997#1 ------------------------------------------------------------ consensus_8997#2 ------------------------------------------------------------ consensus_8997#0 GGACACGAAGTTCTAGAAAAGATATACATGAAAATATACGAATCGTTCATTTTAGAAATT 180 consensus_8997#1 -----------------------------------ATACGAATCGTTCATTTTAGAAATT 25 consensus_8997#2 ------------------------------------------------AGTCTAAAGTTC 12 * * ** * * consensus_8997#0 GATGGGCAGGACAACGGTATTGCACAGTCTAAAGTTCCCTTGAAGTACAATATAGGCACT 240 consensus_8997#1 GATGGGCAGGACAACGGTATTGCACAGTCTAAAGTTCCCTTGAAGTACAATATAGGCACT 85 consensus_8997#2 CCTTG--AAGTGAGTTTTCTTCCACTTTTTATCGTCC-----AGGTACAATATAGGCACT 65 * * * * * * ** *** * ** ** * * **************** consensus_8997#0 AGTTTATATTGCAGAGTTCGACGACTTAATCCTTGGTGGAATAACGAGTCAGAAGAATCA 300 consensus_8997#1 AGTTTATATTGCAGAGTTCGACGACTTAATCCTTGGTGGAATAACGAGTCAGAAGAATCA 145 consensus_8997#2 AGTTTATATTGCAGAGTTCGACGACTTAATCCTTGGTGGA-TAACGAGTCAGAAGA-TCA 123 **************************************** *************** *** consensus_8997#0 GAAACTGCATTCCAAAGAGCAATCAATTTAGTCAGTCGTGAATTCCTTGATACCGTGGAC 360 consensus_8997#1 GAAACTGCATTCCAAAGAGCAATCAATTTAGTCAGTCGTGAATTCCTTGATACCGTGGAC 205 consensus_8997#2 GAAGTATGTTTTTGATTCTAGATT--CTTAGTAAGCTCCTGCTT--TTGA----ATATAT 175 *** ** * ** ***** ** ** **** * * consensus_8997#0 TACTTTACCAATTGCTGGTGGCCTGCACGAAATATTGTAGCTAAAGCAATGAATTGTCGT 420 consensus_8997#1 TACTTTACCAATTGCTGGTGGCCTGCACGAAATATTGTAGCTAAAGT------TTCCCCC 259 consensus_8997#2 AACAGCCCCACTGGCGAATCACGTA---GAAATTTTGTAGCTCCAAG--TCAACCTGACC 230 ** *** * ** * * * ***** ******** * consensus_8997#0 GGAGATGTAGATTCATCGAAAACTATTATAGTACTAGATAGATCTTGTCCATGGAAGAGC 480 consensus_8997#1 TCAAAT-TCTCTTTGTC--ATACTACCATCAGATGGTAATTGNGTTGTTCA-AGGCGTAC 315 consensus_8997#2 TTAAAT-GAGATACAATTTACGTCTTAATAA----ACACAATCACTGTCTATATTTGTAA 285 * ** * * ** * *** * * consensus_8997#0 CATCTATTTGACTTGGAGCGTGAAGAACGTGCGGAAACAGTTGTTTATCCAGAACCACTC 540 consensus_8997#1 CANAAGACAAGNTCGA-------------------------------------------- 331 consensus_8997#2 TACGA------------------------------------------------------- 290 * consensus_8997#0 CATCAAGCAAGTTATCGTCCCATACCAAAGTTTCCCCCTCAAATTCTCTTTGTCATACTA 600 consensus_8997#1 ------------------------------------------------------------ consensus_8997#2 ------------------------------------------------------------ consensus_8997#0 CCATCAGATGGTAATTGGGTTGTTCAAGGCGTACCAAAAGACAAGTTCGACATTCGGTTA 660 consensus_8997#1 ------------------------------------------------------------ consensus_8997#2 ------------------------------------------------------------ consensus_8997#0 CCATTCCCTAACGACTGGCGTTCACTGCAAGATGATCAATTGTGTGCAATGACGGGAATA 720 consensus_8997#1 ------------------------------------------------------------ consensus_8997#2 ------------------------------------------------------------ consensus_8997#0 TCA 723 consensus_8997#1 --- consensus_8997#2 --- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||