cluster # 8998

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Schistosoma mansoni
cluster # 8998 cluster # 8998 Sequences # 8 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8998#0 length = 614 sequences # 2

consensus_8998#1 length = 586 sequences # 5
consensus_8998#2 length = 353 sequences # 1

consensusID : consensus_8998#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 614
fasta sequence

                              [TTATACAATTCGCGCACAGCGTATTTCAAACTCGTGAATTTATTACACATTTATTTTATAGGTTCTGAGTGCCTTTATTTATAATGTACTGGCCGTTCGGTACATAGCATACACAGTTATCGCCCTACTTGCTGAGATCAACAGCATATTTCTTCACACCCGTAAATTGATGCAAATGCACAGAGTTCCTTCAGCGAACATGTCTTATCGATTCAATTCTGTCCTGAACCTAACTACATTCGCAGGTTTTCGGGGTTTCGCACTGCTTCGTATTTCATACGGCATGTATATGAATCCCGAAAAAATGACACCTTTTTATACTGTATTGTTGGGGACAAGTATGTTCATCATGAATCTGCTGAATCCAGTTCTATTTTACATACTTCTACGCAACGATTTTCTACTTCCACCCAAAGATGAAGATCTTTATATCAAAAACGGGATGAAAGCAAATTGTCCTCCCTCAAAAAGCAAAATATCCAATGGTTACAGTTTATCATTAGAAATAAATGGCTTTCCCTGCGATGG-ATTCATAAGCGAAATCTGTGAAAACTTTANATAAGTACTGTGAAATTAATCTATCTGTTGGTGAAAATATACCTACTAATNCTTTC]

[+] EMBL CD178776             [TTATACAATTCGCGCACAGCGTATTTCAAACTCGTGAATTTATTACACATTTATTTTATAGGTTCTGAGTGCCTTTATTTATAATGTACTGGCCGTTCGGTACATAGCATACACAGTTATCGCCCTACTTGCTGAGATCAACAGCATATTTCTTCACACCCGTAAATTGATGCAAATGCACAGAGTTCCTTCAGCGAACATGTCTTATCGATTCAATTCTGTCCTGAACCTAACTACATTCGCAGGTTTTCGGGGTTTCGCACTGCTTCGTATTTCATACGGCATGTATATGAATCCCGAAAAAATGACACCTTTTTATACTGTATTGTTGGGGACAAGTATGTTCATCATGAATCTGCTGAATCCAGTTCTATTTTACATACTTCTACGCAACGATTTTCTACTTCCACCCAAAGATGAAGATCTTTATATCAAAAACGGGATGAAAGCAAATTGTCCTCCCTCAAAAAGCAAAATATCCAATGGTTACAGTTTATCATTAGAAATAAATGGCTTTCCCTGCGATGG ATTCATAAGCGAAATCTGTGAAAACTTTANATAAGTACTGTGAAATTAATCTATCTGTTGGTGAAAATATACCTACTAATNCTT  ]
[-] EMBL CD179011             [                                                           AGTTTCTGAGTGCCTTTATTTATAATGTACTGTCAGTTCGGTACATAGCATACACAGTTATCGCCCTACTTGCTGAGATCAACAGCATATTTCTTCACACCCGTAAATTGATGCAAATGCACAGAGTTCCTTCAGTGAACATGTCTTATCGATTCAATTCTGTCCTGAACCTAACTACATTCGCAGGTTTTCGGGGTTTCGCACTGCTCCGTATTTCATACGGCATGTATATGAATCCCGAAAAAATGACACCTTTTTATACTGTATTGTTGGGGACAAGTATGTTCATCATGAATCTGCTGAATCCAGTTCTATTTTACATACTTCTACGCAACGATTTTCTACTTCCACCCAAAGATGAAGATCTTTATATCAAAAACGGGATGAAAGCAAATTGTCCTCCCTCAAAAAGCAAAATATCCAATGGTTACAGTTTATCATTAGAAATAAATGGCTTTCCCTGCGATGGAATTCATAAGCGAAATCTGTGAAAACTTTAAATAAGTACTGTGAAATTAATCTATCTGTTGGTGAAAATATACCTACTAAT CTTTC]




>consensus_8998#0
TTATACAATTCGCGCACAGCGTATTTCAAACTCGTGAATTTATTACACATTTATTTTATA
GGTTCTGAGTGCCTTTATTTATAATGTACTGGCCGTTCGGTACATAGCATACACAGTTAT
CGCCCTACTTGCTGAGATCAACAGCATATTTCTTCACACCCGTAAATTGATGCAAATGCA
CAGAGTTCCTTCAGCGAACATGTCTTATCGATTCAATTCTGTCCTGAACCTAACTACATT
CGCAGGTTTTCGGGGTTTCGCACTGCTTCGTATTTCATACGGCATGTATATGAATCCCGA
AAAAATGACACCTTTTTATACTGTATTGTTGGGGACAAGTATGTTCATCATGAATCTGCT
GAATCCAGTTCTATTTTACATACTTCTACGCAACGATTTTCTACTTCCACCCAAAGATGA
AGATCTTTATATCAAAAACGGGATGAAAGCAAATTGTCCTCCCTCAAAAAGCAAAATATC
CAATGGTTACAGTTTATCATTAGAAATAAATGGCTTTCCCTGCGATGGATTCATAAGCGA
AATCTGTGAAAACTTTANATAAGTACTGTGAAATTAATCTATCTGTTGGTGAAAATATAC
CTACTAATNCTTTC

consensusID : consensus_8998#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 586
fasta sequence

                              [CGACTCTAGAAGGACCCCCAGAAGGCTGTTGNGAGTTGCAAAGGTTCACTTGCCATATGGAAGTGGCGCAATATGGTGATTTCTTGGTTGCATGCTGTTTTGATTGGAACATGGGATTTATTATGCTTTTATTATTATCCTGAGTTGATGAATGATCCAGTAGACCATATCGTGCCTTTTACATATTACTTAGTGGCCGTTTCTACTGGTTACTTTCTTTATGATTTTTGGGATATGTTTACCCAGAGGCAATTGTTCAAAATGTGGGAATTGACATTGCATCACATTGCAGTTCTGAGTGCCTTTATTTATAATGTACTGTCAGTTCGGTACATAGCATACACAGTTATCGCCCTACTTGCTGAGATCAACAGCATATTTCTTCACACCCGTAAATTGATGCAAATGCACAGAGTTCCTTCAGTGAACATGTCTTATCGATTCAATTCTGTCCTGAACCTAACTACATTCGCAGGTTTTCGGGGTTTCGCACTGCTTCGTATTTCATACGGCATGTATATGAATCCCGAAAAAATGACACCTTTTTATACTGTATTGTTGGGGACAAGTATGTTCATCATGAATC]

[+] EMBL CD166448             [CGACTCTAGAAGGACCCCCAGAAGGCTGTTGNGAGTTGCAAAGGTTCACTTGCCATATGGAAGTGGCGCAATATGGTGATTTCTTGGTTGCATGCTGTTTTGATTGGAACATGGGATTTATTATGCTTTTATTATTATCCTGAGTTGATGAATGATCCAGCAGACCATATCGTGCCTTTTACATATTACTTAGTGGCCGTTTCTACTGGTTACTTTCTTTATGATTTTTGGGATATGTTTACCCAGAGGCAATTGTTCAAAATGTGGGAATTGACATTGCATCACATTGCAGTTCTGAGTGCCTTTATTTATAATGTACTGTCAGTTCGGTACATAGCATACACAGTT                                                                                                                                                                                                                                              ]
[+] EMBL CD166346             [                            TTGNGAGTTGCAAAGGTTCACTTGCCATATGGAAGTGGCGCAATATGGTGATTTCTTGGTTGCATGCTGTTTTGATTGGAACATGGGATTTATTATGCTTTTATTATTATCCTGAGTTGATGAATGATCCAGTAGACCATATCGTGCCTTTTACATATTACTTAGTGGCCGTTTCTACTGGTTACTTTCTTTATGATTTTTGGGATATGTTTACCCAGAGGCAATTGTTCAAAATGTGGGAATTGACA                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD166333             [                                                  TGCTTTATGGAAGTGGCGCAATATGGTGATTTCTTGGTTGCATGCTGTTTTGATTGGAACATGGGATTTATTATGCTTTTATTATTATCCTGAGTTGATGAATGATCCAGTAGACCATATCGTGCCTTTTACATATTACTTAGTGGCCGTTTCTACTGGTTACTTTCTTTATGATTTTTGGGATATGTTTACCCAGAGGCAATTGTTCAAAATGTGGGAATTGACATTGCATCACATTGCAGTTCTGAGTGCCTTTATTTATAATGTACTGTCAGTTCGGTACATAGCATACACAGTT                                                                                                                                                                                                                                              ]
[+] EMBL CD166330             [                                                 tgtcttTATGGAAGTGGCGC ACATGGTGATTTCTTGGTTGCATGCTGTTTTGATTGGAACATGGGATTTATTATGCTTTTATTATTATCCTGAGTTGATGAATGATCCAGTAGACCATATCGTGCCTTTTACATATTACTTAGTGGCCGTTTCTACTGGTTACTTTCTTTATGATTTTGGGGATATGTTTACCCAGAGGCAATTGTTCAAAATGTGGGAATTGACA                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD188181             [                                                                                                                                                                                                                                                                   AAATGTGGGAATTGACATTGCATCACATTGCAGTTCTGAGTGCCTTTATTTATAATGTACTGTCAGTTCGGTACATAGCATACACAGTTATCGCCCTACTTGCTGAGATCAACAGCATATTTCTTCACACCCGTAAATTGATGCAAATGCACAGAGTTCCTTCAGTGAACATGTCTTATCGATTCAATTCTGTCCTGAACCTAACTACATTCGCAGGTTTTCGGGGTTTCGCACTGCTTCGTATTTCATACGGCATGTATATGAATCCCGAAAAAATGACACCTTTTTATACTGTATTGTTGGGGACAAGTATGTTCATCATGAATC]




>consensus_8998#1
CGACTCTAGAAGGACCCCCAGAAGGCTGTTGNGAGTTGCAAAGGTTCACTTGCCATATGG
AAGTGGCGCAATATGGTGATTTCTTGGTTGCATGCTGTTTTGATTGGAACATGGGATTTA
TTATGCTTTTATTATTATCCTGAGTTGATGAATGATCCAGTAGACCATATCGTGCCTTTT
ACATATTACTTAGTGGCCGTTTCTACTGGTTACTTTCTTTATGATTTTTGGGATATGTTT
ACCCAGAGGCAATTGTTCAAAATGTGGGAATTGACATTGCATCACATTGCAGTTCTGAGT
GCCTTTATTTATAATGTACTGTCAGTTCGGTACATAGCATACACAGTTATCGCCCTACTT
GCTGAGATCAACAGCATATTTCTTCACACCCGTAAATTGATGCAAATGCACAGAGTTCCT
TCAGTGAACATGTCTTATCGATTCAATTCTGTCCTGAACCTAACTACATTCGCAGGTTTT
CGGGGTTTCGCACTGCTTCGTATTTCATACGGCATGTATATGAATCCCGAAAAAATGACA
CCTTTTTATACTGTATTGTTGGGGACAAGTATGTTCATCATGAATC

consensusID : consensus_8998#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 353
fasta sequence

                              [TCAGTGATCACGACAGCTTTACAACGCCAATGTACTGGCATGGATTCCTGCCATCTGCGAGTGCCGGTTGCGGCACCATCTGCATCGCATTATCCATGACTTTTTTCAGCGTGCTAGATTATGTTTTACGAGGAGTAAATCCCCCTACGACTGTTGTTTGCAAAGGTTCACTTGCCATATGGAAGTGGCGCAATATGGTGATTTCTTGGTTGCATGCTGTTTTGATTGGAACATGGGATTTATTATGCTTTTATTATTATCCTGAGTTGATGAATGATCCAGTAGACCATATCGTGCCTTTTACATATTACTTAGTGGCCGTTTCTACTGGTTACTTTCTTTATGATTTTTGG]

[+] EMBL CD185801             [TCAGTGATCACGACAGCTTTACAACGCCAATGTACTGGCATGGATTCCTGCCATCTGCGAGTGCCGGTTGCGGCACCATCTGCATCGCATTATCCATGACTTTTTTCAGCGTGCTAGATTATGTTTTACGAGGAGTAAATCCCCCTACGACTGTTGTTTGCAAAGGTTCACTTGCCATATGGAAGTGGCGCAATATGGTGATTTCTTGGTTGCATGCTGTTTTGATTGGAACATGGGATTTATTATGCTTTTATTATTATCCTGAGTTGATGAATGATCCAGTAGACCATATCGTGCCTTTTACATATTACTTAGTGGCCGTTTCTACTGGTTACTTTCTTTATGATTTTTGG]




>consensus_8998#2
TCAGTGATCACGACAGCTTTACAACGCCAATGTACTGGCATGGATTCCTGCCATCTGCGA
GTGCCGGTTGCGGCACCATCTGCATCGCATTATCCATGACTTTTTTCAGCGTGCTAGATT
ATGTTTTACGAGGAGTAAATCCCCCTACGACTGTTGTTTGCAAAGGTTCACTTGCCATAT
GGAAGTGGCGCAATATGGTGATTTCTTGGTTGCATGCTGTTTTGATTGGAACATGGGATT
TATTATGCTTTTATTATTATCCTGAGTTGATGAATGATCCAGTAGACCATATCGTGCCTT
TTACATATTACTTAGTGGCCGTTTCTACTGGTTACTTTCTTTATGATTTTTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8998#1      ------------------------------------------------------------
consensus_8998#2      --------TCAGTGATCACGACAGCTTTACAACGCCAATGTACTG-GCATGGATTCCTGC 51
consensus_8998#0      TTATACAATTCGCGCACAGCGTATTTCAAACTCGTGAATTTATTACACATTTATTT-TAT 59
                                                                                  

consensus_8998#1      ------------------------------------------------------------
consensus_8998#2      CATCTGCGAGTGCCGGTTGCGGCACCATCTGCATCGCATTATCCATGACTTTTTTCAGCG 111
consensus_8998#0      AGGTTCTGAGTGCCTTTATTTATAATGTACTGGCCGTTCGGTACATAGCATACACAGTTA 119
                                                                                  

consensus_8998#1      ---------------CGACTCTAGAAGGACCCCCAGAAGGCTGTTGNGAGTTGCAAAGGT 45
consensus_8998#2      T-GCTAGATTATGTTTTACGAGGAGTAAATCCCCCTACGACTGTTGT---TTGCAAAGGT 167
consensus_8998#0      TCGCCCTACTTGCTGAGATCAACAGCATATTTCTTCACACCCGTAAATTGATGCAAATGC 179
                                       *          *   *   *   * **       ****** * 

consensus_8998#1      TCAC--TTGCCATATGGAAGTGGCGCAATATGGTGATTTCTTGGTTGCAT---GCTGTTT 100
consensus_8998#2      TCAC--TTGCCATATGGAAGTGGCGCAATATGGTGATTTCTTGGTTGCAT---GCTGTTT 222
consensus_8998#0      ACAGAGTTCCTTCAGCGAACATGTCTTATCGATTCAATTCTGTCCTGAACCTAACTACAT 239
                       **   ** *   *  ***   *    **    * * ****    ** *     **   *

consensus_8998#1      TGATTGGAACATGGGATTTATTA-TGCTTTTATTATTATCCTGAGTTGATGAATGATCCA 159
consensus_8998#2      TGATTGGAACATGGGATTTATTA-TGCTTTTATTATTATCCTGAGTTGATGAATGATCCA 281
consensus_8998#0      TCGCAGGTTTTCGGGGTTTCGCACTGCTTCGTATTTCATACGGCATGTAT--ATGAATCC 297
                      *    **     *** ***   * *****    * * ** * *  *  **  ****  * 

consensus_8998#1      GTAGACCATATCGTGCCTTTTACATATTACT-TAGTGGCCGTTTCTACTGGTTACTTTCT 218
consensus_8998#2      GTAGACCATATCGTGCCTTTTACATATTACT-TAGTGGCCGTTTCTACTGGTTACTTTCT 340
consensus_8998#0      CGAAAAAATGACAC-CTTTTTATACTGTATTGTTGGGGACAAGTATGTTCATCATGAATC 356
                        * *  **  *   * ***** *   ** * * * ** *   * *  *  * *      

consensus_8998#1      TTATGATTTTTGGGATATGTTTACCCAGAGGCAATTGTTCAAAATGTGGGAATTGACATT 278
consensus_8998#2      TTATGATTTTTGG----------------------------------------------- 353
consensus_8998#0      TGCTGAATCC-AGTTCTATTTTACATACTTCTACGCAACGATTTTCTACTTCCACCCAAA 415
                      *  *** *    *                                               

consensus_8998#1      GCATCACATTGCAGTTCTGAGTGCCTTTATTTATAATGTACTGTCAGTTCGGTACATAGC 338
consensus_8998#2      ------------------------------------------------------------
consensus_8998#0      GATGAAGATCTTTATATCAAAAACGGGATGAAAGCAAATTGTCCTCCCTCAAAAAGCAAA 475
                                                                                  

consensus_8998#1      ATACACAGTTATCGCCCTACTTGCTGAGATCAACAGCATATTTCTTCACACCCGTAAATT 398
consensus_8998#2      ------------------------------------------------------------
consensus_8998#0      ATATCCAATGGTTACAGTTTATCATTAGAAATAAATGGCTTTCCCTGCGATGGATTCATA 535
                                                                                  

consensus_8998#1      GATGCAAATGCACAGAGTTCCTTCAGTGAACATGTCTTATCGATTCAATTCTGTCCTGAA 458
consensus_8998#2      ------------------------------------------------------------
consensus_8998#0      AGCGAAATCTGTGAAAACTTTANATAAGTACTGTGAAATTAATCTATCTGTTGGTGAAAA 595
                                                                                  

consensus_8998#1      CCTAACTACATTCGCAGGTTTTCGGGGTTTCGCACTGCTTCGTATTTCATACGGCATGTA 518
consensus_8998#2      ------------------------------------------------------------
consensus_8998#0      TATACCTACTAATNCTTTC----------------------------------------- 614
                                                                                  

consensus_8998#1      TATGAATCCCGAAAAAATGACACCTTTTTATACTGTATTGTTGGGGACAAGTATGTTCAT 578
consensus_8998#2      ------------------------------------------------------------
consensus_8998#0      ------------------------------------------------------------
                                                                                  

consensus_8998#1      CATGAATC 586
consensus_8998#2      --------
consensus_8998#0      --------