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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8999#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1094 fasta sequence
[GATAGAAGAAATTTATGTCTGATACTGTAGTCATGTATTCAGGGCTGTCAGCTAGAGAAGCCTTTTCTTCATCCGTCATGTTCACAGGCATGATTTTTCGACTGTACATTCTCATCTTTCCTCGTAAAGTTGATGAAACTATGCTTTTATAGGTTTTATTAACTGCGCCTTTGGGACAGGGAATTTTTTTAGTCCTTAGGGCTTTATCTATTGCATTAACCAACCATGAAAGGAATTCAATGGCATCGCCTTGTTCAGTGATTTGGAAACGCTTTTTACTACACAGCACAACTGCCTGTAAGAATTCATGAGGTGAAACGTGAGTTTTGAAGTTTCGAGGATTCCACAATTTTCGAATAAGTTCACTAAATCTCTGAACCAAAAGCATCATTTGATCTCCAGAGACAGAAGGTAGGTTCTCAAAGTTTTTGATATCCAAGAAATAATTTCGCAATGGACTGATATGACTGAGCATTTGTAATATGACGTTGCAATAATCATTTGCCTTGATATTATTGAGACCTACAACGCCAGGATAATATGTAAGACCATTGTATGCTCTGACCATTTTCGAATAACTGTCCAAAGTAAGTATTTCGGAGGTACTGAAAGTAGGATTTAGAAGGTAGGTAATGTCTTCCAATGACCCATCTAAAATCTCATAATCATCTGGCAAGCAATAAAATCGTCGAGTTTCTAAATTCAGGAAGACGTGGTGGCTTTCACTAACACTGTGGGTATATGCATGAGTAGAATTTCCAC-GACCTTGAAAGTACTTCCCACAGATTAGACAGGCATAGACATTCAGGTGAGATAAAGAAACGGAACACAGCTTTTCGAAGTCGAAATCCAGCATGTTCCTTCGAATAGTATCCAGGTATGGGCATGATCGACTTCTGGTGTCTTCATTTTGATCATTGTAAACGGCTCCATTCCCAGTATACACCTGCTCTTCATCTGACTCTTCACTACGCTTGATCCTTTTTGAGGATCTTTTATGGGCTTCTTCATGCTTCCTTTTGTGTCCAGAAACTGAAGAAACTGAATGAGGTAGAAACGATAGTGAAGACATCTAAGTAGCGCATATATTGACG]
[+] EMBL CD065816 [GATAGAAGAAATTTATGTCTGATACTGTAGTCATGTATTCAGGGCTGTCAGCTAGAGAAGCCTTTTCTTCATCCGTCATGTTCACAGGCATGATTTTTCGACTGTACATTCTCATCTTTCCTCGTAAAGTTGATGAAACTATGCTTTTATAGGTTTTATTAACTGCGCCTTTGGGACAGGGAATTTTTTTAGTCCTTAGGGCTTTATCTATTGCATTAACCAACCATGAAAGGAATTCAATGGCATCGCCTTGTTCAGTGATTTGGAAACGCTTTTTACTACACAGCACAACTGCCTGTAAGAATTCATGAGGTGAAACGTGAGTTTTGAAGTTTCGAGGATTCCACAATTTTCGAATAAGTTCACTAAATCTCTGAACCAAAAGCATCATTTGATCTCCAGAGACAGAAGGTAGGTTCTCAAAGTTTTTGATATCCAAGAAATAATTTCGCAATGGACTGATATGACTGAGCATTTGTAATATGACGTTGCAATAATCATTTGCCTTGATATTATTGAGAACTACAACGCCA ]
[-] EMBL CD065832 [ AAAGGAATTCAATGGCATCGCCTTGTTCAGTGATTTGGAAACGCTTTTTACTACACAGCACAACTGCCTGTAAGAATTCATGAGGTGAAACGTGAGTTTTGAAGTTTCGAGGATTCCACAATTTTCGAATAAGTTCACTAAATCTCTGAACCAAAAGCATCATTTGATCTCCAGAGACAGAAGGTAGGTTCTCAAAGTTTTTGATATCCAAGAAATAATTTCGCAATGGACTGATATGACTGAGCATTTGTAATATGACGTTGCAATAATCATTTGCCTTGATATTATTGAGACCTACAACGCCAGGATAATATGTAAGACCATTGTATGCTCTGACCATTTTCGAATAACTGTCCAAAGTAAGTATTTCGGAGGTACTGAAAGTAGGATTTAGAAGGTAGGTAATGTCTTCCAATGACCCATCTAAAATCTCATAATCATCTGGCAAGCAATAAAATCGTCGAGTTTCTAAATTCAGGAAGACGTGGTGGCTTTCACTAACACTGTGGG ATATGCA ]
[+] EMBL CD127411 [ TTTTGTTATCCAAGAAAT ATTTCGCAATGGACTGATATGACTGAGCATTTGTAATATGACGTTGCAATAATCATTTGCCTTGATATTATTGAGACCTACAACGCCAGGATAATATGTAAGACCATTGTATGCTCTGACCATTTTCGAATAACTGTCCAAAGTAAGTATTTCGGAGGTACTGAAAGTAGGATTTAGAAGGTAGGTAATGTCTTCCAATGACCCATCTAAAATCTCATAATCATCTGGCAAGCAATAAAATCGTCGAGTTTCTAAATTCAGGAAGACGTGGTGGCTTTCACTAACACTGTGGGTATATGCATGAGTAGAATTTCCAC GACCTTGAAAGTACTTCCCACAGATTAGACAGGCATAGACATTCAGGTGAGATAAAGAAACGGAACACAGCTTTTCGAAGTCGAAATCCAGCATGTTCCTTCGAATAGTATCCAGGTATGGGCATGATCGACTTCTGGTGTCTTCATTTTGATCATTGTAAACGGCTCCATTCCCAGTATACA ]
[+] EMBL CD189344 [ AAATCGTCGAGTTTCTAAATTCAGGAAGACGTGGTGGCTTTCACTAACACTGTGGGTATATGCATGAGTAGAATTTCCACTTATCTTGAAAGTACTTCCCACAGATTAGACAGGCATAGACATTCAGGTGAGATAAAGAAACGGAACACAGCTTTTCGAAGTCGAAATCCAGCATGTTCCTTCGAATAGTATCCAGGTATGGGCATGATCGACTTCTGGTGTCTTCATTTTGATCATTGTAAACGGCTCCATTCCCAGTATACACCTGCTCTTCATCTGACT ]
[+] EMBL CD148037 [ CCACAGATTAGACAGGCATAGACATTCAGGTGAGATAAAGAAACGGAACACAGCTTTTCGAAGTCGAAATCCAGCATGTTCCTTCGAATAGTATCCAGGTATGGGCATGATCGACTTCTGGTGTCTTCATTTTGATCATTGTAAACGGCTCCATTCCCAGTATACACCTGCTCTTCATCTGACTCTTCACTACGCTTGATCCTTTTTGAGGATCTTTTATGGGCTTCTTCATGCTTCCTTTTGTGTCCAGAAACTGAAGAAACTGAATGAGGTAGAAACGATAGTGAAGACATCTAAGTAGCGCATATATTGACG]
consensusID : consensus_8999#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 780 fasta sequence
[GAGCCTTATTCGGCACGAGGGCTTCTCTAGCTGACAGCCCTGAATACATGACTACAGTATCAGACATAAATTTCTTCTATCTTACGTGTGACTTACCTCCACCTCCATTATATCTAGATGAATTTAAGGAAAATATCATTCCACAAGTTTCATTAGCTACACTTCTTTCAAAATTTAACGGAGTTACAGAAAAGGAATACAAGACTCATCGTGATTCTACGTTGCGTCGATTTGAGCTTCGTCGACTTCCTCCTTACTTAATTCTTTACATGAAGAGGTTTGTTAAGAACATCTTCACATTGGAGAAAAATCCAACGATAGTTAACTTCCCCATTAAAAGTATTGATTTCGGTGAATTGTTGGCCCCAGAATTCCGAGCTAAACATCGGTATACTACTTACGACTTGGTAGCCAATGTTGTGCATGACGGTCCCCCAACTCCTGGCTCCGGTACGCATCGTATCCACTTGGTACATCGCGGTACTGGAAAATGGTTCGAGCTACAAGACTTGCATGTTAGCGAAGTTTTGCCACAGATGATACCCCTTAGTGAAACTCTTATTCAGGTTTGGGCTGTGAATAAGTCTATACCTAATCCAAGCTTCGTAGAACCTGTAAAAGTAACAGATGAGGAGATTGATGGAGAAACTAAACCAGAATTTAAAACGGATGAGAACGATGAGTGTGAGGCAATTAGGAAGGAAGAGACTATGGATACAGATATTAATGAGTCACAAAACTGATTCGTCCTTTTTT-GTTGCTTTTGTCAATAATATGAAT]
[+] EMBL CD081527 [GAGCCTTATTCGGCACGAGGGCTTCTCTAGCTGACAGCCCTGAATACATGACTACAGTATCAGACATAAATTTCTTCTATCTTACGTGTGACTTACCTCCACCTCCATTATATCTAGATGAATTTAAGGAAAATATCATTCCACAAGTTTCATTAGCTACACTTCTTTCAAAATTTAACGGAGTTACAGAAAAGGAATACAAGACTCATCGTGATTCTACGTTGCGTCGATTTGAGCTTCGTCGACTTCCTCCTTACTTAATTCTTTACATGAAGAGGTTTGTTAAGAACATCTTCACATTGGAGAAAAATCCAACGATAGTTAACTTCCCCATTAAAAGTATTGATTTCGGTGAATTGTTGGCCCCAGAATTCCGAGCTAAACATCGGTATACTACTTACGACTTGGTAGCCAATGTTGTGCATGACGGTCCCCCAACTCCTGGCTCCGGTACGCATCGTATCCACTTGGTACATCGCGGTACTGGAAAATGGTTCGAGCTACAAGACTTGCATGTTAGCGAAGTTTTGCCACAGATGATACCCCTTAGTGAAACTCTTATTCAGGTTTGGGCTGTGAATAAGTCTATACCTAATCCAAGCTTCGTAGAACCTGTAAAAGTAACAGATGAGGAGATTGATGGAGAAACTAAACCAGAATTTAAAACGGATGAGAACGATGAGTGTGAGGCAATTAGGAAGGAAGAGACTATGGATACAGATATTAATGAGTCACAAAACTGATTCGTCCTTTTTT GTTGCTTTTGTCAATAATATGAA ]
[-] EMBL CD075350 [ CAAGACTCATCGTGATTCTACGTTGCGTCGATTTGAGCTTCGTCGACTTCCTCCTTACTTAATTCTTTACATGAAGAGGTTTGTTAAGAACATCTTCACATTGGAGAAAAATCCAACGATAGTTAACTTCCCCATTAAAAGTATTGATTTCGGTGAATTGTTGGCCCCAGAATTCCGAGCTAAACATCGGTATACTACTTACGACTTGGTAGCCAATGTTGTGCATGACGGTCCCCCAACTCCTGGCTCCGGTACGCATCGTATCCACTTGGTACATCGCGGTACTGGAAAATGGTTCGAGCTACAAGACTTGCATGTTAGCGAAGTTTTGCCACAGATGATACCCCTTAGTGAAACTCTTATTCAGGTTTGGGCTGTGAATAAGTCTATACCTAATCCAAGCTTCGTAGAACCTGTAAAAGTAACAGATGAGGAGATTGATGGAGAAACTAAACCAGAATTTAAAACGGATGAGAACGATGAGTGTGAGGCAATTAGGAAGGAAGAGACTATGGATACAGATATTAATGAGTCACAAAACTGATTCGTCCTTTTTT GTTGCTTTTGTCAATAATATGAAT]
[+] EMBL SMAA40616 [ GATGATACCCCTTAGTGAAANTCTTATTCAGGTTTGGGCTGTGAATAAGTCTATACCTAATCCAAGCTTCGTAGAACCTGTAAAAGTAACAGATGAGGAGATTGATGGAGAAACTAAACCAGAATTTAAAACGGATGAGAACGATGAGTGTGAGGCAATTAGGAAGGAAGAGACTATGGATACAGATATTAATGAGTCACAAAACTGATTCATCCTTTTTTGGTTGCTTTTGTCAATAATATAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8999#0 GATAGAAGAAATTTATGTCTGATACTGTAGTCATGTATTCAGGGCTGTCAGCTAGAGAAG 60
consensus_8999#1 ---------------------------------------GAGCCTTATTCGGCACGAGGG 21
** * * * * *
consensus_8999#0 CCTTTTCTTCATCCGTCATGTTCACAGGCATGATTTTTCGACTGTACATTCTCATCTTTC 120
consensus_8999#1 C---TTCTCTAGCTGACAGCCCTGAATACATGACTACAGTATCAGACATAAATTTCTTCT 78
* **** * * * ** * ***** * * **** ****
consensus_8999#0 CTCGTAAAGTTGATGAAACTATGCTTTTATAGGTTTTATTAACTGCGCCTTTGGGACAGG 180
consensus_8999#1 ATCTTACGTGTGACTTACCTCCACCTCCAT---TATATCTAGATGAATTTAAGGAAAATA 135
** ** *** * ** * * ** * * ** ** * ** * *
consensus_8999#0 GAATTTTTTTAGTCCTTAGGGCTTTATCTATTGCATTAACCAAC-------CATGAAAGG 233
consensus_8999#1 TCATTCCACAAGTTTCATTAGCTACACTTCTTTCAAAATTTAACGGAGTTACAGAAAAGG 195
*** *** *** * * ** ** * *** ** *****
consensus_8999#0 AATTCAATGGCATCGCCTTGTTCAGTGATTTGGAAACGCTTTTTACTACACAGCACAACT 293
consensus_8999#1 AATACAA--GACTCATCGTGATT--CTACGTTGCGTCGATTTGAGCTTCGTCG-ACTTCC 250
*** *** * ** * ** * * * * ** *** ** * * ** *
consensus_8999#0 GCCTGTAAGAATTCATGAGGTGAA-ACGTGAGTTTTGAAGTTTCGAGGATTCCACAATTT 352
consensus_8999#1 TCCTTACTTAATTCTTTACATGAAGAGGTTTGTTAAGAACATCTTCACATTGGAGAAAAA 310
*** ***** * * **** * ** *** *** * *** * **
consensus_8999#0 TCGAATAAGTTCACTAAATCTCTGAACCAAAAGCATCATTTGATCTCCAGAGACAGAAGG 412
consensus_8999#1 TCCAACGA---TAGTTAACTTCCCCATTAAAAGTAT----TGATTTC----GGTGAATTG 359
** ** * * * ** ** * ***** ** **** ** * * *
consensus_8999#0 TAGGTTCTCAAAGTTTTTGATATCCAAGAAATAATTTCGCAATGGACTGATATGACTGAG 472
consensus_8999#1 TTGGCCCCAGAA--TTCCGAGCT---AAACATCGGTATACTACTTAC-GACTTGGTAGCC 413
* ** * ** ** ** * * * ** * * * ** ** ** *
consensus_8999#0 CATTTGTAATATGACGTTGCAATAATCATTTGCCTTGATAT-TATTGAG---ACCTACAA 528
consensus_8999#1 AATGTTGTGCATGACGGTCCCCCAACTCCTGGCTCCGGTACGCATCGTATCCACTTGGTA 473
** * ****** * * ** * ** * ** ** * ** * *
consensus_8999#0 CGCCAGGATAATATGTAAGACC----ATTGTATGCTCTGACCATTTTCGAATAACTGTCC 584
consensus_8999#1 CATCGCGGTACTGGAAAATGGTTCGAGCTACAAGACTTGCATGTTAGCGAAGTTTTGCCA 533
* * * ** * ** * * * ** ** **** ** *
consensus_8999#0 AAAGTAA-GTATTTCGGAGGTACTGAAAGTAGGATTTAGAAGGTAGGTAATGTCTTCCAA 643
consensus_8999#1 CAGATGATACCCCTTAGTGAAACTCTTATTCAGGTTTGGGCTGTGAATAA-GTCTAT--- 589
* * * * * * *** * * * *** * ** *** ****
consensus_8999#0 TGACCCATCTAAAATCTCATAATCATCTGGCAAGCAATAAAATCGTCGAGTTTCTAAATT 703
consensus_8999#1 --ACCTAATCCAAGCTTCGTAG---------AACCTGTAAAAGTAACAGATGAGGAGATT 638
*** * ** ** ** ** * ***** * * * ***
consensus_8999#0 CAGGAAGACGTGGTGGCTTTCACTAACACTGTGGGTATATGCATGAGTAGAATTTCCACG 763
consensus_8999#1 GATGGAGAAAC-------TAAACCAGAATTTAAAACGGATGAGAACGATGAGTGTGAGGC 691
* * *** * ** * * * *** * ** * *
consensus_8999#0 ACCTTGAAAGTACTTCCCACAGATTAGACAGGCATAGACATTCAGGTGAGATAAAGAAAC 823
consensus_8999#1 AATTAGGAAGGA------AGAGACTA--TGGATACAGATATTAA--TGAGTCACAAAACT 741
* * * *** * * *** ** * * *** *** * **** * * **
consensus_8999#0 GGAACACAGCTTTTCGAAGTCGAAATCCAGCATGTTCCTTCGAATAGTATCCAGGTATGG 883
consensus_8999#1 GATTCGTCCTTTTTTGTTGCTTTTGTCAATAATATGAAT--------------------- 780
* * **** * * ** * ** * *
consensus_8999#0 GCATGATCGACTTCTGGTGTCTTCATTTTGATCATTGTAAACGGCTCCATTCCCAGTATA 943
consensus_8999#1 ------------------------------------------------------------
consensus_8999#0 CACCTGCTCTTCATCTGACTCTTCACTACGCTTGATCCTTTTTGAGGATCTTTTATGGGC 1003
consensus_8999#1 ------------------------------------------------------------
consensus_8999#0 TTCTTCATGCTTCCTTTTGTGTCCAGAAACTGAAGAAACTGAATGAGGTAGAAACGATAG 1063
consensus_8999#1 ------------------------------------------------------------
consensus_8999#0 TGAAGACATCTAAGTAGCGCATATATTGACG 1094
consensus_8999#1 -------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||