cluster # 9000

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Schistosoma mansoni
cluster # 9000 cluster # 9000 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9000#0 length = 556 sequences # 6

consensus_9000#1 length = 435 sequences # 2

consensusID : consensus_9000#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 556
fasta sequence

                              [GTATCAACGTCATCTTTTG--GAG-AC-AAAATTAGCAC-ATA-TC-AATGCTTGTAACAGCCCACC-TGTTCTGTTGA-AAAAATCATTGTCATCAG-A-TATAAATCTGCCAGA-AATAATCGATAAACCTAGTTCAA-TTATACC-A-AACAATACTACA-GCCACTACTTCTACTAATAGTGATAATAATAATGATGGTT-TTAATAGCTCGAAAGAACATGATGTAATGAGAAAGTTTAGGAACAAATCTCAAACGTTAATTTTATCAAGATTACCATCAACGTCATCCAAGATCTACTTACATTCAAGGCATGCTAGTCTACCAAATCCAAATACATGTAGTAATACTGTTATTATTGGTGATGGTATTAGCAGTCGTGAACATAGTTATGCTAACACTGGTGTTAATCATAGTCGACAAGAAAATCTGTCATTTCGTGTAAATAAAAAGATTCCATGTGATTATTTATGTAAGATACATCGTAATCTTAGTAATTCTTCAGACAGAAAGAATTCTGATATGCTAGATATGATTACTGAGTATTCACCGTATTATAATTTGTCGACA]

[+] EMBL CD065855             [GTATCAACGTCATCTTCTGNNGAG AA CAAATTAGCAC ATA TC AATGCTTGTAACAGCCCACC TGTTCTGTTGA AAAAATCATTGTCATCAG A TATAAATCTGCCAGA AATAATCGATAAACCTAGTTCAA TTATACC A AACAATACTACA GCCACTACTTCTACTAATAGTGATAATAATAATGATGGTT TTAATAGCTCGAAAGAACATGATGTAATGAGAAAGTTTAGGAACAAATCTCAAACGTTAATTTTATCAAGATTACCATCAACGTCATCCAAGATCTACTTACATTCAAGGCATGCTAGTCTACCANATCCAAATACATGTAGTAATACTGTTATTATTGGTGATGGTATTAGCAGTCGTGAACATAGTTATGCTAACACTGGTGTTAATCATAGTCGACAAGAAAATCTGTCATTTCGTGTAAATAAAAAGATTCCATGTGATTATTTATGTAAGATACATCGTAATCTTAGTAATTCTTCAGACAGAAAGAATTCT                                                   ]
[+] EMBL CD065849             [           ATCTTTTG  GAG AC AAAATTAGCAC ATA CC AATGCTTGTAACAGCCCACC TGTTCTGTTGA AAAAATCATTGTCATCAG A TATAAATCTGCCAGATAATAATCGATTAACCTAGTTCAA TTATACC A AACAATACTACA GCCACTACTTCTACTAATAGTGATAATAATAATGATGGTT TTAATAGCTCGAAAGAACATGATGTAATGAGAAAGTTTAGGAACAAATCTCAAACGTTAATTTTATCAAGATTACCATCAACGTCATCCAAGATCTACTTACATTCAAGGCATGCTAGTCTACCAAATCCAAATACATGTAGTAATACTGTTATTATTGGTGATGGTATTAGCAGTCGTGAACATAGTTATGCTAACACTGGTGTTAATCATAGTCGACAAGAAAATCTGTCATTTCGTGTAAATAAAAAGATTCCATGTGATTATTTATGTCAGATACATCGTAATCTTAGTAATTCTTCAGACAGAAAGAATTCTGATATGCTAGATATGATTACTGAGTATTCACCGTATTATAATTTGTCGAC ]
[+] EMBL CD065854             [           ATCTTTTG  GAGAACAAAAATTAGCAC ATA TC AATGCTTGTAACAGCCCACC TGTTCTGTTGA AAAAATCATTGTCATCAG A TATAAATCTGCCAGA AATAATCGATAAACCTAGTTCAA TTATACC A AACAATACTACA GCCACTACTTCTACTAATAGTGATAATAATAATGATGGTT TTAATAGCTCGAAAGAACATGATGTAATGAGAAAGTTTAGGAACAAATCTCAAACGTTAATTTTATCAAGATTACCATCAACGTCATCCAAGATCTACTTACATTCAAGGCATGCTAGTCTACCAAATCCAAATACATGTAGTAATACTGTTATTATTGGTGATGGTATTAGCAGTCGTGAACATAGTTATGCTAACACTGGTGTTAATCATAGTCGACAAGAAAATCTGTCATTTCGTGTAAATAAAAAGATTCCATGTGATTATTTATGTCAGATACATCGTAATCTTAGTAATTCTTCAGACAGAAAGAATTCTGATATGCTAGATATGATT                                 ]
[+] EMBL CD065801             [            TCTTTGG  GAG AC AGATTTATCACTATATTCTACTGC TGTGTCAGCCCACCATG TCTGTTGAGAAAAATCATTGTCATCAGCATTAT ATTCTGCCATACAAGTGTCGATAAACCTAGTTCAAGTTATACCTACATCAATACTACAGGCCACTACTTCTACTAGTAGTGATAATAATAATGATGGTTGTTAATAGCTCGAAAGAACCTGATGTAATGAGAAAGTTTAGGAACAAATCTCAAACGTTAATTTTATCAAGATTACCATCAACGTCATCCAAGATCTACTTACATTCAAGGCATGCTAGTCTACCAAATCCAAATACATGTAGTAATACTGTTATTATTGGTGATGGTATTAGCAGTCGTGAACATAGTTATGCTAACACTGGTGTTAATCATAGTCGACAAGAAAATCTGTCATTTCGTGTAAATAAAAAGATTCCATGTGATTATTTATGTAAGATACATCGTAATCTTAGTAATTCTTCAGACAGAAAGAATTCTGATATGCTAGATATGATTACTG                             ]
[+] EMBL CD065809             [                                                                                                                                        TCAA TTATGCC A AACAATACTACA GCCACTAGTTCTACCAATAGTGATAATAATAATGATGGTT TTAATAGCTCGAAAGAACATGATGTAATGAGAAAGTTTAGGAACAAATCTCAAACGTTAATTTTATCAAGATTACCATCAACGTCATCCAAGATCTACTTACATTCAAGGCATGCTAGTCTACCAAATCCAAATACATGTAGTAATACTGTTATTATTGGTGATGGTATTAGCAGTCGTGAACATAGTTATGCTAACACTGGTGTTAATCATAGTCGACAAGAAAATCTGTCATTTCGTGTAAATAAAAAGATTCCATGTGATTATTTATGTAAGATACATCGTAATCTTAGTAATTCTTCAGACAGAAAGAATTCTGATATGCTAGATATGATTACTGAGTATTCACCGTATTATAATTTGTCGACA]
[-] EMBL CD065800             [                                                                                                                                                                                                                                           GAAAGTTTAGGAACAAATCTCAAACGTTAATTTGATCAAGATTACCATCAACGTCATCCAAGATCTACTTACATTCAAGGCATGCTAGTCTACCAAATCCAAATACATGTAGTAATACTGTTATTATTGGTGATGGTATTAGCAGTCGTGAACATAGTTATGCTAACACTGGTGTTAATCATAGTCGACAAGAAAACCTGTCATTTCGTGTAAATAAAAAGATTCCATGTGATTATTTATGTAAGATACATCGTAATCTTAGTAATTCTTCAGACA                                                              ]




>consensus_9000#0
GTATCAACGTCATCTTTTGGAGACAAAATTAGCACATATCAATGCTTGTAACAGCCCACC
TGTTCTGTTGAAAAAATCATTGTCATCAGATATAAATCTGCCAGAAATAATCGATAAACC
TAGTTCAATTATACCAAACAATACTACAGCCACTACTTCTACTAATAGTGATAATAATAA
TGATGGTTTTAATAGCTCGAAAGAACATGATGTAATGAGAAAGTTTAGGAACAAATCTCA
AACGTTAATTTTATCAAGATTACCATCAACGTCATCCAAGATCTACTTACATTCAAGGCA
TGCTAGTCTACCAAATCCAAATACATGTAGTAATACTGTTATTATTGGTGATGGTATTAG
CAGTCGTGAACATAGTTATGCTAACACTGGTGTTAATCATAGTCGACAAGAAAATCTGTC
ATTTCGTGTAAATAAAAAGATTCCATGTGATTATTTATGTAAGATACATCGTAATCTTAG
TAATTCTTCAGACAGAAAGAATTCTGATATGCTAGATATGATTACTGAGTATTCACCGTA
TTATAATTTGTCGACA

consensusID : consensus_9000#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 435
fasta sequence

                              [CTTTTTTTGTTCTCCATCTATACAACACCAGCAACGCCCACAGTTTGTTTCCCTCACCAACTATCTTACGAATACAGTGATAACGATAATATTAGCAATGTAGCAGAAATAGATAAAAAGGCGAGTGTCGATGAACAAACACTAGTTGACGGGGTTGGTACTATAGTATTAGCCGTAGAAAGAGGCGATTCAACGTCATCTTTTGGAGAACAAAAATTAGCACATATCAATGCTTGTAACAGCCCACCTGTTCTGTTGAAAAAATCGTTGTCATCAGATATAAATCTGCCAGAAATAGATCAAAAGGCGAGTGTCGATGAACAAACACTAGTTGACGGGGTTGGTACTATAGTATTAGCCGTAGAAAGAGGCGATTCAACGTCATCTTTTGGAGAACAAAAATTAGCACATATCAATGCTTGTAACAGCCCACCT]

[+] EMBL CD187568             [CTTTTTTTGTTCTCCATCTATACAACACCAGCAACGCCCACAGTTTGTTTCCCTCACCAACTATCTTACGAATACAGTGATAACGATAATATTAGCAATGTAGCAGAAATAGATAAAAAGGCGAGTGTCGATGAACAAACACTAGTTGACGGGGTTGGTACTATAGTATTAGCCGTAGAAAGAGGCGATTCAACGTCATCTTTTGGAGAACAAAAATTAGCACATATCAATGCTTGTAACAGCCCACCTGTTCTGTTGAAAAAATCGTTGTCATCAGATATAAATCTGCCAGAAATAGATCAAAAGGCGAGTGTCGATGAACAAACACTAGTTGACGGGGTTGGTACTATAG                                                                                   ]
[-] EMBL CD185206             [                 aatgACAACACCAGCAACGCCCACAGTTTGTTTCCCTCACCAACTATCTAACGAATACAGTGATAACAATAATATTAGCAATGTAGCAGAAATAGATAAAAAGGCGAGTGTCGATGAACAAACACTAGTTGACGGGGTTGGTACTATAGTATTAGCCGTAGAAAGAGGCGATTCAACGTCATCTTTTGGAGAACAAAAATTAGCACATATCAATGCTTGTAACAGCCCACCTGTTCTGTTGAAAAAATCATTGTCATCAGATATAAATCTGCCAGAAATAGATAAAAAGGCGAGTGTCGATGAACAAACACTAGTTGACGGGGTTGGTACTATAGTATTAGCCGTAGAAAGAGGCGATTCAACGTCATCTTTTGGAGAACAAAAATTAGCACATATCAATGCTTGTAACAGCCCACCT]




>consensus_9000#1
CTTTTTTTGTTCTCCATCTATACAACACCAGCAACGCCCACAGTTTGTTTCCCTCACCAA
CTATCTTACGAATACAGTGATAACGATAATATTAGCAATGTAGCAGAAATAGATAAAAAG
GCGAGTGTCGATGAACAAACACTAGTTGACGGGGTTGGTACTATAGTATTAGCCGTAGAA
AGAGGCGATTCAACGTCATCTTTTGGAGAACAAAAATTAGCACATATCAATGCTTGTAAC
AGCCCACCTGTTCTGTTGAAAAAATCGTTGTCATCAGATATAAATCTGCCAGAAATAGAT
CAAAAGGCGAGTGTCGATGAACAAACACTAGTTGACGGGGTTGGTACTATAGTATTAGCC
GTAGAAAGAGGCGATTCAACGTCATCTTTTGGAGAACAAAAATTAGCACATATCAATGCT
TGTAACAGCCCACCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9000#0      GTATCAACGTCATCTTTTGGAGACAAAATTAGCACATATCAATGCTTGTAACAGCCCACC 60
consensus_9000#1      ------------------------------------------------------------
                                                                                  

consensus_9000#0      TGTTCTGTTGAAAAAATCATTGTCATCAGATATAAATCTGCCAGAAATAATCGATAAACC 120
consensus_9000#1      --------------------CTTTTTTTGTTCTCCATCTATACAACACCAGCAACGCCCA 40
                                            *  *  * * *  ****     * *  * * *    * 

consensus_9000#0      TAGTTCAATTATACCA--AACAATACTACAGCCACTACTTCTACTAATAGTGATAATAAT 178
consensus_9000#1      CAGTTTGTTTCCCTCACCAACTATCTTACGAATACAG----TGATAACGATAATATTAGC 96
                       ****   **    **  *** **  ***    **      *  ***   * *** **  

consensus_9000#0      AATGATGGTTTTAATAGCTCGAAAGAACATGATGTAATGAGAAAGTTTAGG-AACAAATC 237
consensus_9000#1      AATG-TAGCAGAAATAGATAAAAAGGCGAGTGTCGATGAACAAACACTAGTTGACGGGGT 155
                      **** * *    ***** *  ****   *   *  *   * ***   ***   **     

consensus_9000#0      TCAAACGTTAATTTTATCAAGATTACCATCAACGTCATCCAAGATCTACTTACATTCAAG 297
consensus_9000#1      TGGTACTATAGTATTAGCCGTAG----AAAGAGGCGATTCAACGTCATCTT----TTGGA 207
                      *   **  ** * *** *   *     *   * *  ** ***  **  ***    *    

consensus_9000#0      GCATGCTAGTCTACCAAATCCAAATACATGTAGTAATACTGTTATTATTGGTGATGGTAT 357
consensus_9000#1      GAACAAAAAT-TAGCACATATCAATGCTTGTAACAGCCCACCTGTT-CTGTTGAAAAAAT 265
                      * *    * * ** ** **   *** * ****  *   *   * **  ** ***    **

consensus_9000#0      TAGCAGTCGTGAACATAGTTATGCTAACACTGGTGTTAATCATAGTCGACAA-GAAAATC 416
consensus_9000#1      CGTTGTCATCAGATATAAATCTGCCAGAAATAGATCAAAAGGCGAGTGTCGATGAACAAA 325
                                  * ***  * *** *  * * *    **        * * * *** *  

consensus_9000#0      TGTCATTTCGTGTAAATAAAAAGATTCCATGTGATTATTTAT-GTAAGATACATCGTAAT 475
consensus_9000#1      CACTAGTTGACGGGGTT-----GGTACTATAGTATTAGCCGTAGAAAGAGGCGATTCAAC 380
                          * **   *    *     * * * **   ****    * * ****  *     ** 

consensus_9000#0      CTTAGTAATTCTTCAGACAGAAAGAATTCTGATATGCTAGATATGATTACTGAGTATTCA 535
consensus_9000#1      ----GTCATCTTTTGGAGAACAAAAATTAGCACATATCAATGCTTGTAACAGCCCACCT- 435
                          ** **  **  ** *  ** ****   * **   *    *  * ** *   *    

consensus_9000#0      CCGTATTATAATTTGTCGACA 556
consensus_9000#1      ---------------------