These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9004#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 697 fasta sequence [AATGACGTAAATTATTCCTGATTCAAGTGAGTTCTTTCCAATTTTTTTCATGTCGTTTTCGGTCTAACATTGCACTCTATCATAGACATAAGTTTGGAGTCATACTCCCGATAGTAGAAACTTATGTTCTCGACGCAACTAATGTCCATTCATCTCATTGGTACGCAGCAACCGTCGTGTTTGAAGCCGCATTACCAGCCGATTAGTAATGATTATGTTCATATTATCTATTCATCGACATGTAAATCTGAATGCTGTATCATCTACTACGCATCAAAAATACTTGGTTACTGCAATTAAGCATTCTATTTCCATTGCATGGTATACGAGAACATAGAGTTTAGAGCTAGTCTCTCATAGATACACTCTTGTTCGTCACATTCAAGTCAGTCTCCAATCGCCGTCATCGATCATCATATGTATTGGTACTTTTATTATGCCTTAGTACGGTTTAGTAACAAACGAGGTTGAGCGCATATCCCTCTAACTACACAAATCACGCTAGGCTTCATGACCAAAAAGGAATACGACTCCGCATATCTCGTCTCCGCAGTCACTATCCTGTTCCTCTGGTCATTCAGCCAATACATATTTAACGATAACCCAGCGCAACGACAACTTCGCATTTTATTATCACTATCAATAGCAGTATAGCACGAATATCACCCGTTGATGCAGTCATCATCGTACGACTGAA] [+] EMBL CD069528 [AATGACGTAAATTATTCCTGATTCAAGTGAGTTCTTTCCAATTTTTTTCATGTCGTTTTCGGTCTAACATTGCACTCTATCATAGACATAAGTTTGGAGTCATACTCCCGATAGTAGAAACTTATGTTCTCGACGCAACTAATGTCCATTCATCTCATTGGTACGCAGCAACCGTCGTGTTTGAAGCCGCATTACCAGCCGATTAGTAATGATTATGTTCATATTATCTATTCATCGACATGTAAATCTGAATGCTGTATCATCTACTACGCATCAAAAATACTTGGTTACTGCAATTAAGCATTCTATTTCCATTGCATGGTATACGAGAACATAGAGTTTAGAGCTAGTCTCTCATAGATACACTCTTGTTCGTCACATTCAAGTCAGTCTCCAATCGCCGTCATCGATCATCATATGTATTGGTACTTTTATTATGCCTTAGTACGGTTTAGTAACAAACGAGGTTGAGCGCATATCCCTCTAACTACACAAATCACGCTAGGCTTCATGACCAAAAAGGA ] [+] EMBL CD072855 [ ATCATATGTATTGGGACTTTTATTATGCCTTAATACGGTTTAGTAACAAACGAGGTTGAGCGCATATCCCTCTAACTACACAAACCACGCTAGGCTTCATGACCAAAAAGGAATACGACTCCGCATATCTCGTCTCCGCAGTCACTATCCTGTTCCTCTGGTCATTCAGCCAATACATATTTAACGATAACCCAGCGCAACGACAACTTCGCATTTTATTATCACTATCAATAGCAGTATAGCACGAATATCACCCGTTGATGCAGTCATCATCGTACGACTGAA] consensusID : consensus_9004#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 674 fasta sequence [TAAGATGCCCCATCAATAAAAATGTAGTTGCCGCTTCCTTTTGCCTTCTGATTTTATACACCGTTAAGATTGGTATAATAACGGTTATCGAAGTGAACTATTATTGAAGCACGGCACTACATAACTGGTAATCCCGACGTACGAACGCGAAAACATAATTGGTTAGCCCGACATGCGAACACGCAACAGATTTGGAGGCCTCGCCGAACGAACATGGACCAGAATCGACAACCTCGACGTACGAACTCACAACATGATTGGCAAGCCGTATTTGGAACACGCAGCAAGATTGGCAACAGCAACGAGCGAACACAAATCAAAAATGGAACCGCCGACGACATATTTCGTTATGATCCGAATAATCATCATATGCTCATTATTACAATGATGTTATATCATCATCTAACGTGGAATTATTATTTTTGTTCGTATTGACATTAAACTATGACATTTATGCAGTCGAATCACTAATCGAACAAATTATAATTATATAGACATTACACGTTATGATATTCAAAACTCACTGGATTATTTTTATCATCTAATGACGTAACATTTTCCTGATTTAAGTAAGTTCGTTCTAA-TTTTTTTCATGTCATTTCCGGTCTAATATTACACTCTATCATAGACATAAGTTTGGAGTCATACTCCCGATAGTAGGAACTTATGTTCTC] [+] EMBL CD069295 [TAAGATGCCCCATCAATAAAAATGTAGTTGCCGCTTCCTTTTGCCTTCTGATTTTATACACCGTTAAGATTGGTATAATAACGGTTATCGAAGTGAACTATTATTGAAGCACGGCACTACATAACTGGTAATCCCGACGTACGAACGCGAAAACATAATTGGTTAGCCCGACATGCGAACACGCAACAGATTTGGAGGCCTCGCCGAACGAACATGGACCAGAATCGACAACCTCGACGTACGAACTCACAACATGATTGGCAAGCCGTATTTGGAACACGCAGCAAGATTGGCAACAGCAACGAGCGAACACAAATCAAAAATGGAACCGCCGACGACATATTTCGTTATGATCCGAATAATCATCATATGCTCATTATTACAATGATGTTATATCATCATCTAACGTGGAATTATCATTTCAGTTCGTATTGACATTAAACTATGACATTTATGCAGTCGAATCACTAATCGA ] [+] EMBL CD195774 [ CCGCTTCCTTTTGCCTTCTGATTTTATACACCGTTAAGATTGGTATAATAACGGTTATCGAAGTGAACTATTATTGAAGCACGGCACTACATAACTGGTAATCCCGACGTACGAACGCGTAAACATAATTGGTTAGCCCGACATGCGAACACGCAACAGATTTGGAGGCCTCGCCGAACGAACATGGACCAGAATCGACAACCTCGACGTACGAACTCACAACATGATTGGCAAGCCGTATTTGGAACACGCAGCAAGATTGGCAACAGCAACGAGCGAACACAAATCANAAATGGAACCGCCG ] [-] EMBL CD069247 [ TGGACCAGAATCGACAACCTCGACGTACGAACTCACAACATGATTGGCAAGCCGTATTTGGAACACGCAGCAAGATTGGCAACAGCAACGAGCGAACACAAATCAAAAATGGAACCGCCGACGACATATTTCGTTATGATCCGAATAATCATCATATGCTCATTATTACAATGATGTTATATCATCATCTAACGTGGAATTATTATTTTTGTTCGTATTGACATTAAACTATGACATTTATGCAGTCGAATCACTAATCGAACAAATTATAATTATATAGACATTACACGTTATGATATTCAAAACTCACTGGATTATTTTTATTATCCAATGACGTAAAATTTTTCTGATTTAAGTGAGTTCTTTCCAA TTTTTTTCATGTCATTTTCGGTCTAATATTACACTCTATCATAGACATAAGTTTGGAGTCACACTCCCGATAGTAGGAACTTAT ] [-] EMBL CD062887 [ CGACAACCTCGACGTACGAACTCACAACATGATTGGCAAGCCGTATTTGGAACACGCAGCAAGATTGGCAACAGCAACGAGCGAACACGAATCAAAAATGGAACCGCCGACGACATATTTCGTTATGATCCGAATAATCATCATATGCTCATTATTACAATAATGTTATATCATCATCTGACGTGGAATTATTATTTTTGTTCGCATTGACATTAAACTATGACA ] [-] EMBL CD192397 [ TATGATATTCAAAACTCACTGGATTATTTTTATCATCTAATGACGTAACATTTTCCTGATTTAAGTAAGTTCGTTCTAATTTTTTTTCATGTCATTTCCGGTCTAATATTACACTCTATCATAGACATAAGTTTGGAGTCATACTCCCGATAGTAGGAACTTATGTTCTC] [-] EMBL CD192554 [ TATGATATTCAAAACTCACTGGATTATTTTTATCATCTAATGACGTAACATTTTCCTGATTTAAGTAAGTTCGTTCTAATTTTTTTTCATGTCATTTCCGGTCTAATATTACACTCTATCATAGACATAAGTTTGGAGTCATACTCCCGATAGTAGGAACTTATGTTCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9004#0 ----------AATGACGTAAATTATTCCTGATTCAAGTGAGTTCTTTCCAATTTTTTTCA 50 consensus_9004#1 TAAGATGCCCCATCAATAAAAATGTAGTTGCCGCTTCCTTTTGCCTTCTGATTTTATACA 60 ** * *** * * ** * * * *** ***** * ** consensus_9004#0 T-GTCGTTTTCGGTCTAACATTGCACTCTATCATAGAC-AT-----AAGTTTGGAGTCAT 103 consensus_9004#1 CCGTTAAGATTGGTATAATAACGGTTATCGAAGTGAACTATTATTGAAGCACGGCACTAC 120 ** * *** *** * * * ** ** *** ** * consensus_9004#0 ACTCCCGATAGTAGAAACTTATGTTCTCGACGCAACTAATGTCCA-TTCATCTCATTGGT 162 consensus_9004#1 ATAACTGGTAATCCCGACGTACGAACGCGAAAACATAATTGGTTAGCCCGACATGCGAAC 180 * * * ** * ** ** * * *** * * ** * * * consensus_9004#0 ACGCAGCAACCGTCGTGTTTGAAGCCGCATTACCAGCCGATTAGTAATGATTATGTTCAT 222 consensus_9004#1 ACGCAACAGATTTGGAGGCCTC-GCCGAACGAACA-TGGACCAGAATCGACAACCTCGAC 238 ***** ** * * * **** * * ** ** ** * ** * * * consensus_9004#0 ATTATCTATTCATCGACATGTAAATCTGAATGCTGTATCATCTACTACGCATCAAAAATA 282 consensus_9004#1 GT-ACGAACTCA-CAACATG---ATTGGCAAGCCGTATT-TGGAACACGCAGCAAGA--- 289 * * * *** * ***** ** * * ** **** * * ***** *** * consensus_9004#0 CTTGGTTACTGCAATTAAGCATTCTATTTCCATTGCATGGTATACGAGAACATAGAGTTT 342 consensus_9004#1 -TTGGCAACAGCAACGAGCGAACACAAATCAAAAATGGAACCGCCGACGACATA---TTT 345 **** ** **** * * * ** * *** ***** *** consensus_9004#0 AGAGCTAGTCTC--TCATAGATACACTCTTGTTCGTCACATTCAAGTCA-GTCTCCAATC 399 consensus_9004#1 CGTTATGATCCGAATAATCATCATATGCTCATT-ATTACAATGATGTTATATCATCATCT 404 * * ** * ** * * ** ** * *** * * ** * ** ** consensus_9004#0 GCCGTCATCGATCATCATATGTATTGGTACTTTTATTATGCCTTAGTACGGTTTAGTAAC 459 consensus_9004#1 AACGTGG--AATTATTATTTTTGTTCGTATTGACATTAAAC--TATGACATTTATGCAGT 460 *** ** ** ** * * ** *** * **** * ** ** ** * * consensus_9004#0 AAACGAGGTTGAGCGCATATCCCTCTAACTACACAAATCACGCTAGGCTTCATGACCAAA 519 consensus_9004#1 CGA-ATCACTAATCGAACAAAT-TATAATTATATAGA---CATTACACGTTATGATATTC 515 * * * ** * * * *** ** * * * * ** * * **** consensus_9004#0 AAGGAATACGACTCCGCATATCTCGTCTCCGCAGTCACTATCCTGTTCCTCTG-GTCATT 578 consensus_9004#1 AAAACTCACTGGATTATTTTTATCATCTAATGACGTAACATTTTCCTGATTTAAGTAAGT 575 ** ** * * ** *** * * ** * * * * ** * * consensus_9004#0 CAGCCAATACATATTTAACGATAACCCAGCGCAACGACAACTTCGCATTTTATTATCACT 638 consensus_9004#1 TCGTTCTAATTTTTTTCATGTCATTTCCGGTC-----TAATATTACACTCTATCATAGAC 630 * * * *** * * * * * * ** * ** * *** ** consensus_9004#0 ATCAAT--AGCAGTATAGCACGAATATCACCCGTTGATGCAGTCATCATCGTACGACTGA 696 consensus_9004#1 ATAAGTTTGGAGTCATACTCCCGATAGTAGGAACTTATGTTCTC---------------- 674 ** * * * *** * *** * * *** ** consensus_9004#0 A 697 consensus_9004#1 - |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||