cluster # 9006

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Schistosoma mansoni
cluster # 9006 cluster # 9006 Sequences # 8 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9006#0 length = 654 sequences # 3
consensus_9006#1 length = 389 sequences # 2

consensus_9006#2 length = 334 sequences # 2
consensus_9006#3 length = 211 sequences # 1

consensusID : consensus_9006#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 654
fasta sequence

                              [ACAGATTGACGAGGCATCAAAGGAGTAGGGACATTTAGTGCTTGGGTTGGAACTAAGCCAAAGCTATTTTTATTAAATTGTATAGCGAATCCAGACATGGGAGTTAGTGCATTATTAGTCAATGTCAGCTCCATAAAAATCTGTGCTGCCTTACGAGCAAATGTACCACGGATTTCGAGACCTTTACCACGAGCAGCTTCCAGTAAAACAGTTGCAGGTGGCACAAATGCGCTAGCATCACCAGAAGGATCAGACATTTTGATTCCTCCAAAAATATCTGCCAACACGTCAGCAGCCGACGAAGATGCTCCTCCAGACTGAGTCTTCTGTTCTTCACTTGGATGAGTTTTAGTAACACCTGGCAAGAGATCGTCTAAGCCATCACCTAAAAGATCAGGGGTCGCTGAACTATATCCAGTATTTGGTACAGGAGGACGAGAAAACTGATGCATCGTTGAGTCATATGTAGATGGTCCACTTCCAAGATCAATATCTAATAGGTCCCCAATTAATGTTTCCTGAGTTGGGATAACTGTACGAGCTGGAACATCTGCTTGTTGTGAATCACCATAATTTGCTCCAGACACAGAGGAGACCCCATTTACGCGTGCTGGAAGTTGAGGCCGAGCCTCGTGCCGAATTCTGGCCGTCGAG]

[+] EMBL CD179156             [ACAGATTGACGAGGCATCAAAGGAGTAGGGACATTTAGTGCTTGGGTTGGAACTAAGCCAAAGCTATTTTTATTAAATTGTATAGCGAATCCAGACATGGGAGTTAGTGCATTATTAGTCAATGTCAGCTCCATAAAAATCTGTGCTGCCTTACGAGCAAATGTACCACGGATTTCGAGACCTTTACCACGAGCAGCTTCCAGTAAAACAGTTGCAGGTGGCACAAATGCGCTAGCATCACCAGAAGGATCAGACATTTTGATTCCTCCAAAAATATCTGCCAACACGTCAGCAGCCGACGAAGATGCTCCTCCAGACTGAGTCTTCTGTTCTTCACTTGGATGAGTTTTAGTAACACCTGGCAAGAGATCGTCTAAGCCAT                                                                                                                                                                                                                                                                                ]
[+] EMBL CD069055             [                                                                                                              ATTATTAGTCAATGTCAGCTCCATAAAAATCTGTGCTGCCTTACGAGCAAATGTACCACGGATTTCGAGACCTTTACCACGAGCAGCTTCCAGTAAAACAGTTGCAGGTGGCACAAATGCGCTAGCATCACCAGAAGGATCAGACATTTTGATTCCTCCAAAAATATCTGCCAACACGTCAGCAGCCGACGAAGATGCTCCTCCAGACTGAGTCTTCTGTTCTTCACTTGGATGAGTTTTAGTAACACCTGGCAAGAGATCGTCTAAGCCATCACCTAAAAGATCAGGGGTCGCTGAACTATATCCAGTATTTGGTACAGGAGGACGAGAAAACTGATGCATCGTTGAGTCATATGTAGATGGTCCACTTCCAAGATCAATATCTAATAGGTCCCCAATTAATGTTTCCTGAGTTGGGATAACTGTACGAGCTGGAACATCTGCTTGTTGTGAATCACCATAATTTGCTCCAGACACAGAGGAGA                                                           ]
[-] EMBL CD077576             [                                                                                                                                                                                                                                                                                                                                                                      CTGGCAAGAGATCGTCTAAGCCATCACCTAAAAGATCAGGGGTCGCTGAACTATATCCAGTATTTGGTACAGGAGGACGAGAAAACTGATGCATCGTTGAGTCATATGTAGATGGTCCACTTCCAAGATCAATATCTAATAGGTCCCCAATTAATGTTTCCTGAGTTGGGATAACTGTAGGAGCTGGAACATCTGCTTGTTGTGAATCACCATAATTTGCTCCAGACACAGAGGAGACCCCATTTACGCGTGCTGGAAGTTGAGGCCGAGCCTCGTGCCGAATTCTGGCCGTCGAG]




>consensus_9006#0
ACAGATTGACGAGGCATCAAAGGAGTAGGGACATTTAGTGCTTGGGTTGGAACTAAGCCA
AAGCTATTTTTATTAAATTGTATAGCGAATCCAGACATGGGAGTTAGTGCATTATTAGTC
AATGTCAGCTCCATAAAAATCTGTGCTGCCTTACGAGCAAATGTACCACGGATTTCGAGA
CCTTTACCACGAGCAGCTTCCAGTAAAACAGTTGCAGGTGGCACAAATGCGCTAGCATCA
CCAGAAGGATCAGACATTTTGATTCCTCCAAAAATATCTGCCAACACGTCAGCAGCCGAC
GAAGATGCTCCTCCAGACTGAGTCTTCTGTTCTTCACTTGGATGAGTTTTAGTAACACCT
GGCAAGAGATCGTCTAAGCCATCACCTAAAAGATCAGGGGTCGCTGAACTATATCCAGTA
TTTGGTACAGGAGGACGAGAAAACTGATGCATCGTTGAGTCATATGTAGATGGTCCACTT
CCAAGATCAATATCTAATAGGTCCCCAATTAATGTTTCCTGAGTTGGGATAACTGTACGA
GCTGGAACATCTGCTTGTTGTGAATCACCATAATTTGCTCCAGACACAGAGGAGACCCCA
TTTACGCGTGCTGGAAGTTGAGGCCGAGCCTCGTGCCGAATTCTGGCCGTCGAG

consensusID : consensus_9006#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 389
fasta sequence

                              [CCTAGTCAAAATGAACAACAGTTCACTTTGAGTCCAAAAAATCTCACTGCTGATGCTTGTAGCAATAAATTACGTCAAAACAATGTATTCACTATTGCTATACGTAATTTGGATGGTCAAGATATGCTTTACCAATTTAATAAAAATAGCTTTGGCTTAGTTCCAACCCAAGCACTAAATGTCCCTACTCCTTTGATGCCTCGTCAATCTGTTAATGTATCCCTTCCGTTAGCGACTACTGGTCCTGTAATGAAGATGGTTCCACTTATGAATCTACAGATTGCTGTCAAGAATAATATTGACGTATTTTACTTTGCTACCTTGGTCCCAATGCATATTTTGTTTGTCGAAGATGGAGAAATGGATAAACGAGTTTTCCTAGCTACTTG]

[+] EMBL CD111058             [CCTAGTCAAAATGAACAACAGTTCACTTTGAGTCCAAAAAATCTCACTGCTGATGCTTGTAGCAATAAATTACGTCAAAACAATGTATTCACTATTGCTATACGTAATTTGGATGGTCAAGATATGCTTTACCAATTTAATAAAAATAGCTTTGGCTTAGTTCCAACCCAAGCACTAAATGTCCCTACTCCTTTGATGCCTCGTCAATCTGTTAATGTATCCCTTCCGTTAGCGACTACTGGTCCTGTAATGAAGATGGTTCCACTTATGAATCTACAGATTGCTGTCAAGAATAATATTGACGTATTTTACTTTGCTACCTTGGTCCCAATGCATATTTTGTTTGTCGAAGATGGAGAAATGGATAAACGAGTTTTCCTAGCTACTTG]
[+] EMBL CD078971             [                                                                                                                                                                          tGCACTAAATGTCCATACTCCTTGGATGCCTCGTAAATCTGTGAATGTATCCCTTCCGTTAGCGACTACTGGACCTGTAATGAATATGGTTCCACTTATGAATCTACAGATTGCTGCCAAGAATAATATTGACGTATTATACTTTGCTACCTTGGTCCCAATGCATATTT                                                 ]




>consensus_9006#1
CCTAGTCAAAATGAACAACAGTTCACTTTGAGTCCAAAAAATCTCACTGCTGATGCTTGT
AGCAATAAATTACGTCAAAACAATGTATTCACTATTGCTATACGTAATTTGGATGGTCAA
GATATGCTTTACCAATTTAATAAAAATAGCTTTGGCTTAGTTCCAACCCAAGCACTAAAT
GTCCCTACTCCTTTGATGCCTCGTCAATCTGTTAATGTATCCCTTCCGTTAGCGACTACT
GGTCCTGTAATGAAGATGGTTCCACTTATGAATCTACAGATTGCTGTCAAGAATAATATT
GACGTATTTTACTTTGCTACCTTGGTCCCAATGCATATTTTGTTTGTCGAAGATGGAGAA
ATGGATAAACGAGTTTTCCTAGCTACTTG

consensusID : consensus_9006#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 334
fasta sequence

                              [TCACTTTGAGTCCAAAAAATCTCACTGCTGATGCTTGGAGCAATAAATTACGTCAAAACAATGTATTCACTATTGCTAAACGTAATTTGGATGGTCAAGATATGCTTTACCAATCTATGAAGCTTACAAATGGTATTTGGGTATTAGCTGAATTAAAAACTCAACCGGACAATCCGTCTTTTATTTCATCTTTGAAATCACGTACAATGGATGTACATCCTGGTGTTCAATTGGCATTCGATGAAATTTTAAATCATTGATTATTGTTTATTCTCTTATAAATATTTACTATAATAATTAGTTTGATCATTTCTTCCCTCTACTACTAGTAACA]

[+] EMBL CD181029             [TCACTTTGAGTCCAAAAAATCTCACTGCTGATGCTTGGAGCAATAAATTACGTCAAAACAATGTATTCACTATTGCTAAACGTAATTTGGATGGTCAAGATATGCTTTACCAATCTATGAAGCTTACAAATGGTATTTGGGTATTAGCTGAATTAAAAACTCAACCGGACAATCCGTCTTTTATTTCATCTTTGAAATCACGTACAATG                                                                                                                             ]
[-] EMBL CD134222             [                                                                        TTGCTAAACGTAATTTGGATGGTCAAGATATGCTTTACCAATCTATGAAGCTTACAAATGGTATTTGGGTATTAGCTGAATTAAAAATTCAACCGGACAATCAGTCTTTTATTTTATCTTTGAAATCACGTACAATGGATGTACATCCTGGTGTTCAATTGGCATTCGATGAAATTTTAAATCATTGATTATTGTTTATTCTCTTATAAATATTTACTATAATAATTAGTTTGATCATTTCTTCCCTCTACTACTAGTAACA]




>consensus_9006#2
TCACTTTGAGTCCAAAAAATCTCACTGCTGATGCTTGGAGCAATAAATTACGTCAAAACA
ATGTATTCACTATTGCTAAACGTAATTTGGATGGTCAAGATATGCTTTACCAATCTATGA
AGCTTACAAATGGTATTTGGGTATTAGCTGAATTAAAAACTCAACCGGACAATCCGTCTT
TTATTTCATCTTTGAAATCACGTACAATGGATGTACATCCTGGTGTTCAATTGGCATTCG
ATGAAATTTTAAATCATTGATTATTGTTTATTCTCTTATAAATATTTACTATAATAATTA
GTTTGATCATTTCTTCCCTCTACTACTAGTAACA

consensusID : consensus_9006#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 211
fasta sequence

                              [AAGGAGTAGGGACATTTAGTGTTTGGGTTGGAACTAAGCCAAAGCTATTTTTATTAAATTGTATATCGTATCCAGACATGGGAGTTAGTGCATTATTAGTCAATGTCAGCTCCATAAAAATCTGTGCTGCCTTACCCGCCCATGTACCACGGATTTAGAGACCTTCCCGGCGAGCAGCCTGGCAGTAAAACAGTTGCAGGTGGCACCAACG]

[-] EMBL CD060076             [AAGGAGTAGGGACATTTAGTGTTTGGGTTGGAACTAAGCCAAAGCTATTTTTATTAAATTGTATATCGTATCCAGACATGGGAGTTAGTGCATTATTAGTCAATGTCAGCTCCATAAAAATCTGTGCTGCCTTACCCGCCCATGTACCACGGATTTAGAGACCTTCCCGGCGAGCAGCCTGGCAGTAAAACAGTTGCAGGTGGCACCAACG]




>consensus_9006#3
AAGGAGTAGGGACATTTAGTGTTTGGGTTGGAACTAAGCCAAAGCTATTTTTATTAAATT
GTATATCGTATCCAGACATGGGAGTTAGTGCATTATTAGTCAATGTCAGCTCCATAAAAA
TCTGTGCTGCCTTACCCGCCCATGTACCACGGATTTAGAGACCTTCCCGGCGAGCAGCCT
GGCAGTAAAACAGTTGCAGGTGGCACCAACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9006#0      ----------------ACAGATTGACGAGGCATCAAAGGAGTAGGGACATTTAGTGCTTG 44
consensus_9006#3      -----------------------------------AAGGAGTAGGGACATTTAGTGTTTG 25
consensus_9006#1      CCTAGTCAAAATGAACAACAGTTCACTTTGAGTCCAAAAAATCTC-ACTGCTGATGCTTG 59
consensus_9006#2      ----------------------TCACTTTGAGTCCAAAAAATCTC-ACTGCTGATGCTTG 37
                                                         **  * *    **   *  ** ***

consensus_9006#0      GGTTGG--AACTAAGCCAAAGCTATTTTTATTAAATTG-TATAGCGAATCCAGACATGGG 101
consensus_9006#3      GGTTGG--AACTAAGCCAAAGCTATTTTTATTAAATTG-TATATCGTATCCAGACATGGG 82
consensus_9006#1      TAGCAATAAATTACGTCAAAACAATGTATTCACTATTGCTATACGTAATTTGGATGGTCA 119
consensus_9006#2      GAGCAATAAATTACGTCAAAACAATGTATTCACTATTGCTAAACGTAATTTGGATGGTCA 97
                              ** ** * **** * ** * *     **** ** *    **   **      

consensus_9006#0      AGTTAGTGCATTATTAGTCAATGTCAGCTCCATAAAAATCT---GTGCTGCCTTACGAGC 158
consensus_9006#3      AGTTAGTGCATTATTAGTCAATGTCAGCTCCATAAAAATCT---GTGCTGCCTTACCCGC 139
consensus_9006#1      AGATA-TGCTTTACCAATTTAATAAAAATAGCTTTGGCTT---AGTTCCAACCCAAGCAC 175
consensus_9006#2      AGATA-TGCTTTACCAATCTATGAAGCTTACAAATGGTATTTGGGTATTAGCTGAATTAA 156
                      ** ** *** ***  * *  *       *               **     *  *     

consensus_9006#0      AAA-TGTACCACGGATTTCGAGACCTTTACCACGAGCAGCTTC-CAGTAAAACAGTTGCA 216
consensus_9006#3      CCA-TGTACCACGGATTTAGAGACCTTCCCGGCGAGCAGCCTGGCAGTAAAACAGTTGCA 198
consensus_9006#1      TAAATGTCCCTACTCCTTTGATGCCTCGTCAATCTGTTAATGTAT-CCCTTCCGTTAGCG 234
consensus_9006#2      AAACTCAACCGGACAATCCGTCTTTTATTTCATCTTTGAAATCAC-GTACAATGGATGTA 215
                        * *   **      *  *     *                               *  

consensus_9006#0      GGTGGCACAAATGCGCTAGCATCACCAGAAGGATCAGACATTTTGATTCCTCCAAAAATA 276
consensus_9006#3      GGTGGCACCAACG----------------------------------------------- 211
consensus_9006#1      ACTACTGGTCCTGTAATGAAGATGGTTCCACTTATGAATCTACAGATTGCTGTCAAGAAT 294
consensus_9006#2      CATCCTGGTGTTCAATTGGCATTCGATGAAATTTTAAATC-ATTGATTATTGTTTATTCT 274
                        *                                                         

consensus_9006#0      TCTGCCAACACGTCAGCAGCCGACGAAGATGCTCCTCCAGACTGAGTCTTCTGTTCTTCA 336
consensus_9006#3      ------------------------------------------------------------
consensus_9006#1      AATATTGACGTATT-TTACTTTGCTACCTTGGTCCCAATGCATATTTTGTTTGTCGAAGA 353
consensus_9006#2      CTTATAAATAT----TTACTATAATAA-TTAGTTTGATCATTTCTTCCCTCTACTACTAG 329
                                                                                  

consensus_9006#0      CTTGGATGAGTTTTAGTAACACCTGGCAAGAGATCGTCTAAGCCATCACCTAAAAGATCA 396
consensus_9006#3      ------------------------------------------------------------
consensus_9006#1      TGGAGAAATGGATAAACGAGTTTTCCTAGCTACTTG------------------------ 389
consensus_9006#2      TAACA------------------------------------------------------- 334
                                                                                  

consensus_9006#0      GGGGTCGCTGAACTATATCCAGTATTTGGTACAGGAGGACGAGAAAACTGATGCATCGTT 456
consensus_9006#3      ------------------------------------------------------------
consensus_9006#1      ------------------------------------------------------------
consensus_9006#2      ------------------------------------------------------------
                                                                                  

consensus_9006#0      GAGTCATATGTAGATGGTCCACTTCCAAGATCAATATCTAATAGGTCCCCAATTAATGTT 516
consensus_9006#3      ------------------------------------------------------------
consensus_9006#1      ------------------------------------------------------------
consensus_9006#2      ------------------------------------------------------------
                                                                                  

consensus_9006#0      TCCTGAGTTGGGATAACTGTACGAGCTGGAACATCTGCTTGTTGTGAATCACCATAATTT 576
consensus_9006#3      ------------------------------------------------------------
consensus_9006#1      ------------------------------------------------------------
consensus_9006#2      ------------------------------------------------------------
                                                                                  

consensus_9006#0      GCTCCAGACACAGAGGAGACCCCATTTACGCGTGCTGGAAGTTGAGGCCGAGCCTCGTGC 636
consensus_9006#3      ------------------------------------------------------------
consensus_9006#1      ------------------------------------------------------------
consensus_9006#2      ------------------------------------------------------------
                                                                                  

consensus_9006#0      CGAATTCTGGCCGTCGAG 654
consensus_9006#3      ------------------
consensus_9006#1      ------------------
consensus_9006#2      ------------------