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Schistosoma mansoni
cluster # 9007 cluster # 9007       Sequences # 8       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9007#0 length = 1381 sequences # 7  
consensus_9007#1 length = 94 sequences # 1  

consensusID : consensus_9007#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1381
fasta sequence
                              [TGGTTACGTTTTAGAATGTCCAAGACATGGCACCATCTATCGTAGTCGTGGTTACTGGTCTGGTAACGTAGAGCCAGAAATGAATCCTCAAGTACACTGGGAAATCGTACATGTTTGGCAAGGAGAAAAGTCAATACTTTCGGGTACTCATCCAGTTAGTCAGTTATTGTTAGATGGATTAACTGTCGTTTCTAGTCAAGTAAGTCAGTTGGCTGGTCCTCCA-GCACGTC-GTTTGGGAGATCT-TAT-TGCTGACAGCGTGGCTCCTCGGTATTGGCAACCCAACTCTAGTATTAAAGCATGTGCTGTTTGTAAGGTTGAATTTCAAGGTTCATCAGATGATTCTGTTTGCAGCCGTAGTTCACT-TATGAGACAAAAATCCACTACCGATAAAAAGCACTCAACATTATCTGCTGGTGATGATAGTCCTCAAAAAGATAAGGCGTCTACCGGCAAAAGATAATTCCATACTCAATCGGTCGTCATCGTTTTCAGATTCGTTAAATAAAGAAAAAAGTTCT-ACTAAACCATTGAAGCCTTTTATTGATGACTTATCGAAACATCATTGTCGAGCTTGAGGTAGAGGTGTCTGAGCTAAGTGTTCAACTGGGCGTTTGCCTGTTCC-AGATCATGGATATGGAAGTGATGGAGTACGTGTATGTGACCAGTGCTATGATGCTCGATTACAAGATAAAGTTATCGATTCAAAAACTCGTGTATCTGGAATGAATTATAACTCTCAAATCAATAACAATTCTTTAACTGGTCGGAAGGTAATTGAAATGTTATCTGCTACAGCTGATTATATAGCACCAATATATACTGGACCTAAAGAACTCGTTAAATCTCTTGCTCGTCCAGATTATTGGCAACCTGATGATCAATGTGTCTCGTGCAACGTATGTTCCGCCCCATTCGGCTCACGTTTAACTATTCATCATTGTCGTTCTTGCGGTCAGGGTGTTTGCGGGTTTTGTTCCCAGCATTATCAACCTGTGCCTAAAAGAGGTCTTGATTTCCCTTCACGTGTGTGCGATCGTTGTTACCAACCAAACTTAAAGGATTATGAAACTTCTCATCGTCCAACTGTATCTGAACACCGAAGCTTAGATTTGGCTGGTAACGTACCAAATCAGCAAATGCAACGACGGAAGCGTAACACTCAATACAACAATCCTAATGTAAACACTGCCCATAAAAAAAAATTCCGAGGGTTGAATTCACATTTTTCAACTGTGAAGTGTAGTTTATCAATGAGTTTATTTTTTTAACTCTTTAACATTCAGAAACACTTCTATATACATTGACGAACAAACACTGGATTATTGCTGCAATAATGTTAATGAATTTTACAAGTGACAAAAGGAATACGCCAATGCTACGT]

[+] EMBL CD170964             [TGGTTACGTTTTAGAATGTCCAAGACATGGCACCATCTATCGTAGTCGTGGTTACTGGTCTGGTAACGTAGAGCCAGAAATGAATCCTCAAGTACACTGGGAAATCGTACATGTTTGGCAAGGAGAAAAGTCAATACTTTCGGGTACTCATCCAGTTAGTCAGTTATTGTTAGATGGATTAACTGTCGTTTCTAGTCAAGTAAGTCAGTTGGCTGGTCCTCCA GCACGTC GTTTGGGAGATCT TAT TGCTGACAGCGTGGCTCCTCGGTATTGGCAAACCAACTCTAGTATTAAAGCATGTGCTGTTTGTAAGGTTGAATTTCAAGGTTCATCAGATGATTCTGTTTGCAGCCGTAGTTCACT TATGAGACAAAAATCCACTACCGATAAAAAGCACTCAACATTATCTGCTGGTGATGATAGTCCTCAAAAAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CD132032             [                                                                                                                                       ACTTTCGGGTACTCATCCAGTTAGTCAGTTATTGTTAGATGGATTAACTGTCGTTTCTAGTCAAGTAAGTCAGTTGGCTGGTCCTCCA GCACGTC GTTTGGGAGATCT TAT TGCTGACAGCGTGGCTCCTCGGTATTGGCAACCCAACTCTAGTATTAAAGCATGTGCTGTTTGTAAGGTTGAATTTCAAGGTTCATCAGATGATTCTGTTTGCAGCCGTAGTTCACT TATGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD060108             [                                                                                                                                                                                                                      aggCCTCCATCCACGTCTGTTTGCGAGATCTATATATGCTGACAGCGTGGCTCCTCGGTATTGGCAACCCAACTCTAGTATTAAAGCATGTGCTGTTTGTAAGGTTGAATTTCAAGGTTCATCAGATGATTCTGTTTGCAGCCGTAGTTCACTATATGAGACAAAAATCCACTATCGATAACAAGCACTCAACATTATCTGCTGGTGATGATAGTCCTCAAAAAGATAAGGCGTCTACCGGCAAAAGATAATTCCATACTCAATCGGTCGTCATCGTTTTCAGATTCGTTAAATAAAGAAAAAAGTTCTAACTAAACCATTGAAGCCTTTTATTGATGACTTATCGAAACATCATTGTCGAGCTTGAGGTAGAGGTGTCTGAGCTAAGTGTTCAACTGGGCGTTTGCCTGTTCCAAGATCATGGATATGGAAGTGATGGAGTACGTGTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD090293             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ATAATTCCATACTCAATCGGTCGTCATCGTTTCCAGATTCGTTAAATAAAGAAAAAAGTTCT ACTAAACCATTGAAGCCTTTTATTGATGACTTATCGAAACATCATTGTCGAGCTTGTGGTAGAGGTGTCTGTGCTAAGTGTTCAACTGGCCGTTTGCCTGTTCC AGATCAAGGATATGGAAGTGATGGTGTACGTGTTTGTGACCAGTGCTATGATGCTCGATTACAAGATAAAGTTATCGATTCAAAAACTCGTGTATCTGGAATGAATTATAACTCTCAAATCAATAACAATTCTTTAACTGGTCGGAAGGTAATTGAAATGTTATCTGCTACAGCTGATTATATAGCACCAATATATACTGGACCTAAAGAACTCGTTAAATCTCTTGCTCGTCCAGATTATTGGCAACCTGATGATCAATGTGTCTCGTGCAACGTATGTTCCGCCCCATTCGGCTCACGTTTAACTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD091088             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TATCGATTCAAAAACTCGTGTATCTGGAATGAATTATAACTCTCAAATCAATAACAATTCTTTAACTGGTCGGAAGGTAATTGAAATGTTATCTGCTACAGCTGATTATATAGCACCAATATATACTGGACCTAAAGAACTCGTTAAATCTCTTGCTCGTCCAGATTATTGGCAACCTGATGATCAATGTGTCTCGTGCAACGTATGTTCCGCCCCATTCGGCTCACGTTTAACTATTCATCATTGTCGTTCTTGCGGTCAGGGTGTTTGCGGGTTTTGTTCCCAGCATTATCAACCTGTGCCTAAAAGAGGTCTTGATTTCCCTTCACGTGTGTGCGATCGTTGTTACCAACCAAACTTAAAGGATTATGAAACTTCTCATCGTCCAACTGTATCTGAACACCGAAGCTTAGATTTGGCTGGTAACGTACCAAATCAGCAAATGCAACGACGGAAGCG                                                                                                                                                                                                                                    ]
[+] EMBL CD157592             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TTAACTATTCATCATTGTCGTTCTTGCGGTCAGGGTGTTTGCGGGTTTTGTTCCCAGCATTATCAACCTGTGCCTAAAAGAGGTCTTGATTTCCCTTCACGTGTGTGCGATCGTTGTTACCAACCAAACTTAAAGGATTATGAAACTTCTCATCGTCCAACTGTATCTGAACACCGAAGCTTA                                                                                                                                                                                                                                                                                   ]
[-] EMBL CD091113             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         tnCGGNTTTTGTTCCCAGCATTATCAACCTGTGCCTAAAAGAGGTCTTGATTTCCCTTCACGTGTGTGCGATCGTTGTTACCAACCAAACTTAAAGGATTATGAAACTTCTCATCGTCCAACTGTATCTGAACACCGAAGCTTAGATTTGGCTGGTAACGTACCAAATCAGCAAATGCAACAACGGAAGCGTAACACTCAATACAACAATCCTAATGTAAACACTGCCCATAAAAAAAAATTCCGAGGGTTGAATTCACATTTTTCAACTGTGAAGTGTAGTTTATCAATGAGTTTATTTTTTTAACTCTTTAACATTCAGAAACACTTCTATATACATTGACGAACAAACACTGGATTATTGCTGCAATAATGTTAATGAATTTTACAAGTGACAAAAGGAATACGCCAATGCTACGT]


>consensus_9007#0 TGGTTACGTTTTAGAATGTCCAAGACATGGCACCATCTATCGTAGTCGTGGTTACTGGTC TGGTAACGTAGAGCCAGAAATGAATCCTCAAGTACACTGGGAAATCGTACATGTTTGGCA AGGAGAAAAGTCAATACTTTCGGGTACTCATCCAGTTAGTCAGTTATTGTTAGATGGATT AACTGTCGTTTCTAGTCAAGTAAGTCAGTTGGCTGGTCCTCCAGCACGTCGTTTGGGAGA TCTTATTGCTGACAGCGTGGCTCCTCGGTATTGGCAACCCAACTCTAGTATTAAAGCATG TGCTGTTTGTAAGGTTGAATTTCAAGGTTCATCAGATGATTCTGTTTGCAGCCGTAGTTC ACTTATGAGACAAAAATCCACTACCGATAAAAAGCACTCAACATTATCTGCTGGTGATGA TAGTCCTCAAAAAGATAAGGCGTCTACCGGCAAAAGATAATTCCATACTCAATCGGTCGT CATCGTTTTCAGATTCGTTAAATAAAGAAAAAAGTTCTACTAAACCATTGAAGCCTTTTA TTGATGACTTATCGAAACATCATTGTCGAGCTTGAGGTAGAGGTGTCTGAGCTAAGTGTT CAACTGGGCGTTTGCCTGTTCCAGATCATGGATATGGAAGTGATGGAGTACGTGTATGTG ACCAGTGCTATGATGCTCGATTACAAGATAAAGTTATCGATTCAAAAACTCGTGTATCTG GAATGAATTATAACTCTCAAATCAATAACAATTCTTTAACTGGTCGGAAGGTAATTGAAA TGTTATCTGCTACAGCTGATTATATAGCACCAATATATACTGGACCTAAAGAACTCGTTA AATCTCTTGCTCGTCCAGATTATTGGCAACCTGATGATCAATGTGTCTCGTGCAACGTAT GTTCCGCCCCATTCGGCTCACGTTTAACTATTCATCATTGTCGTTCTTGCGGTCAGGGTG TTTGCGGGTTTTGTTCCCAGCATTATCAACCTGTGCCTAAAAGAGGTCTTGATTTCCCTT CACGTGTGTGCGATCGTTGTTACCAACCAAACTTAAAGGATTATGAAACTTCTCATCGTC CAACTGTATCTGAACACCGAAGCTTAGATTTGGCTGGTAACGTACCAAATCAGCAAATGC AACGACGGAAGCGTAACACTCAATACAACAATCCTAATGTAAACACTGCCCATAAAAAAA AATTCCGAGGGTTGAATTCACATTTTTCAACTGTGAAGTGTAGTTTATCAATGAGTTTAT TTTTTTAACTCTTTAACATTCAGAAACACTTCTATATACATTGACGAACAAACACTGGAT TATTGCTGCAATAATGTTAATGAATTTTACAAGTGACAAAAGGAATACGCCAATGCTACG T



consensusID : consensus_9007#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 94
fasta sequence
                              [ACAACGATCGCACACACGTGAAGGGAAATCAAGACCTCTTTTAGGCACAGGTTGATAATGCTGGGAACAAATTTTTTTTTACACCCTGACCGCA]

[+] EMBL CD115617             [ACAACGATCGCACACACGTGAAGGGAAATCAAGACCTCTTTTAGGCACAGGTTGATAATGCTGGGAACAAATTTTTTTTTACACCCTGACCGCA]


>consensus_9007#1 ACAACGATCGCACACACGTGAAGGGAAATCAAGACCTCTTTTAGGCACAGGTTGATAATG CTGGGAACAAATTTTTTTTTACACCCTGACCGCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9007#0      TGGTTACGTTTTAGAATGTCCAAGACATGGCACCATCTATCGTAGTCGTGGTTACTGGTC 60
consensus_9007#1      ------------------------------------------------------------
                                                                                  

consensus_9007#0      TGGTAACGTAGAGCCAGAAATGAATCCTCAAGTACACTGGGAAATCGTACATGTTTGGCA 120
consensus_9007#1      ------------------------------------------------------------
                                                                                  

consensus_9007#0      AGGAGAAAAGTCAATACTTTCGGGTACTCATCCAGTTAGTCAGTTATTGTTAGATGGATT 180
consensus_9007#1      ------------------------------------------------------------
                                                                                  

consensus_9007#0      AACTGTCGTTTCTAGTCAAGTAAGTCAGTTGGCTGGTCCTCCAGCACGTCGTTTGGGAGA 240
consensus_9007#1      ------------------------------------------------------------
                                                                                  

consensus_9007#0      TCTTATTGCTGACAGCGTGGCTCCTCGGTATTGGCAACCCAACTCTAGTATTAAAGCATG 300
consensus_9007#1      ------------------------------------------------------------
                                                                                  

consensus_9007#0      TGCTGTTTGTAAGGTTGAATTTCAAGGTTCATCAGATGATTCTGTTTGCAGCCGTAGTTC 360
consensus_9007#1      ------------------------------------------------------------
                                                                                  

consensus_9007#0      ACTTATGAGACAAAAATCCACTACCGATAAAAAGCACTCAACATTATCTGCTGGTGATGA 420
consensus_9007#1      ------------------------------------------------------------
                                                                                  

consensus_9007#0      TAGTCCTCAAAAAGATAAGGCGTCTACCGGCAAAAGATAATTCCATACTCAATCGGTCGT 480
consensus_9007#1      ------------------------------------------------------------
                                                                                  

consensus_9007#0      CATCGTTTTCAGATTCGTTAAATAAAGAAAAAAGTTCTACTAAACCATTGAAGCCTTTTA 540
consensus_9007#1      ------------------------------------------------------------
                                                                                  

consensus_9007#0      TTGATGACTTATCGAAACATCATTGTCGAGCTTGAGGTAGAGGTGTCTGAGCTAAGTGTT 600
consensus_9007#1      ------------------------------------------------------------
                                                                                  

consensus_9007#0      CAACTGGGCGTTTGCCTGTTCCAGATCATGGATATGGAAGTGATGGAGTACGTGTATGTG 660
consensus_9007#1      ------------------------------------------------------------
                                                                                  

consensus_9007#0      ACCAGTGCTATGATGCTCGATTACAAGATAAAGTTATCGATTCAAAAACTCGTGTATCTG 720
consensus_9007#1      ------------------------------------------------------------
                                                                                  

consensus_9007#0      GAATGAATTATAACTCTCAAATCAATAACAATTCTTTAACTGGTCGGAAGGTAATTGAAA 780
consensus_9007#1      ------------------------------------------------------------
                                                                                  

consensus_9007#0      TGTTATCTGCTACAGCTGATTATATAGCACCAATATATACTGGACCTAAAGAACTCGTTA 840
consensus_9007#1      -----------------------ACAACGATCGCACACACGTGA---AGGGAAATCA--A 32
                                             * * *      * * **  **   *  *** **   *

consensus_9007#0      AATCTCTTGCTCGTCCAGATTATTGGCAACCTGATGATCAATGTGTCTCGTGCAACGTAT 900
consensus_9007#1      GACCTCTTTTAGGCACAGG---TTGATAATGCTGGGAACAAATTTTTTTTTACACCCTGA 89
                       * *****    *  ***    ***  **      ** ***  * * *  * ** * *  

consensus_9007#0      GTTCCGCCCCATTCGGCTCACGTTTAACTATTCATCATTGTCGTTCTTGCGGTCAGGGTG 960
consensus_9007#1      CCGCA------------------------------------------------------- 94
                         *                                                        

consensus_9007#0      TTTGCGGGTTTTGTTCCCAGCATTATCAACCTGTGCCTAAAAGAGGTCTTGATTTCCCTT 1020
consensus_9007#1      ------------------------------------------------------------
                                                                                  

consensus_9007#0      CACGTGTGTGCGATCGTTGTTACCAACCAAACTTAAAGGATTATGAAACTTCTCATCGTC 1080
consensus_9007#1      ------------------------------------------------------------
                                                                                  

consensus_9007#0      CAACTGTATCTGAACACCGAAGCTTAGATTTGGCTGGTAACGTACCAAATCAGCAAATGC 1140
consensus_9007#1      ------------------------------------------------------------
                                                                                  

consensus_9007#0      AACGACGGAAGCGTAACACTCAATACAACAATCCTAATGTAAACACTGCCCATAAAAAAA 1200
consensus_9007#1      ------------------------------------------------------------
                                                                                  

consensus_9007#0      AATTCCGAGGGTTGAATTCACATTTTTCAACTGTGAAGTGTAGTTTATCAATGAGTTTAT 1260
consensus_9007#1      ------------------------------------------------------------
                                                                                  

consensus_9007#0      TTTTTTAACTCTTTAACATTCAGAAACACTTCTATATACATTGACGAACAAACACTGGAT 1320
consensus_9007#1      ------------------------------------------------------------
                                                                                  

consensus_9007#0      TATTGCTGCAATAATGTTAATGAATTTTACAAGTGACAAAAGGAATACGCCAATGCTACG 1380
consensus_9007#1      ------------------------------------------------------------
                                                                                  

consensus_9007#0      T 1381
consensus_9007#1      -
                       




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)