These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9007#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1381 fasta sequence [TGGTTACGTTTTAGAATGTCCAAGACATGGCACCATCTATCGTAGTCGTGGTTACTGGTCTGGTAACGTAGAGCCAGAAATGAATCCTCAAGTACACTGGGAAATCGTACATGTTTGGCAAGGAGAAAAGTCAATACTTTCGGGTACTCATCCAGTTAGTCAGTTATTGTTAGATGGATTAACTGTCGTTTCTAGTCAAGTAAGTCAGTTGGCTGGTCCTCCA-GCACGTC-GTTTGGGAGATCT-TAT-TGCTGACAGCGTGGCTCCTCGGTATTGGCAACCCAACTCTAGTATTAAAGCATGTGCTGTTTGTAAGGTTGAATTTCAAGGTTCATCAGATGATTCTGTTTGCAGCCGTAGTTCACT-TATGAGACAAAAATCCACTACCGATAAAAAGCACTCAACATTATCTGCTGGTGATGATAGTCCTCAAAAAGATAAGGCGTCTACCGGCAAAAGATAATTCCATACTCAATCGGTCGTCATCGTTTTCAGATTCGTTAAATAAAGAAAAAAGTTCT-ACTAAACCATTGAAGCCTTTTATTGATGACTTATCGAAACATCATTGTCGAGCTTGAGGTAGAGGTGTCTGAGCTAAGTGTTCAACTGGGCGTTTGCCTGTTCC-AGATCATGGATATGGAAGTGATGGAGTACGTGTATGTGACCAGTGCTATGATGCTCGATTACAAGATAAAGTTATCGATTCAAAAACTCGTGTATCTGGAATGAATTATAACTCTCAAATCAATAACAATTCTTTAACTGGTCGGAAGGTAATTGAAATGTTATCTGCTACAGCTGATTATATAGCACCAATATATACTGGACCTAAAGAACTCGTTAAATCTCTTGCTCGTCCAGATTATTGGCAACCTGATGATCAATGTGTCTCGTGCAACGTATGTTCCGCCCCATTCGGCTCACGTTTAACTATTCATCATTGTCGTTCTTGCGGTCAGGGTGTTTGCGGGTTTTGTTCCCAGCATTATCAACCTGTGCCTAAAAGAGGTCTTGATTTCCCTTCACGTGTGTGCGATCGTTGTTACCAACCAAACTTAAAGGATTATGAAACTTCTCATCGTCCAACTGTATCTGAACACCGAAGCTTAGATTTGGCTGGTAACGTACCAAATCAGCAAATGCAACGACGGAAGCGTAACACTCAATACAACAATCCTAATGTAAACACTGCCCATAAAAAAAAATTCCGAGGGTTGAATTCACATTTTTCAACTGTGAAGTGTAGTTTATCAATGAGTTTATTTTTTTAACTCTTTAACATTCAGAAACACTTCTATATACATTGACGAACAAACACTGGATTATTGCTGCAATAATGTTAATGAATTTTACAAGTGACAAAAGGAATACGCCAATGCTACGT] [+] EMBL CD170964 [TGGTTACGTTTTAGAATGTCCAAGACATGGCACCATCTATCGTAGTCGTGGTTACTGGTCTGGTAACGTAGAGCCAGAAATGAATCCTCAAGTACACTGGGAAATCGTACATGTTTGGCAAGGAGAAAAGTCAATACTTTCGGGTACTCATCCAGTTAGTCAGTTATTGTTAGATGGATTAACTGTCGTTTCTAGTCAAGTAAGTCAGTTGGCTGGTCCTCCA GCACGTC GTTTGGGAGATCT TAT TGCTGACAGCGTGGCTCCTCGGTATTGGCAAACCAACTCTAGTATTAAAGCATGTGCTGTTTGTAAGGTTGAATTTCAAGGTTCATCAGATGATTCTGTTTGCAGCCGTAGTTCACT TATGAGACAAAAATCCACTACCGATAAAAAGCACTCAACATTATCTGCTGGTGATGATAGTCCTCAAAAAGA ] [-] EMBL CD132032 [ ACTTTCGGGTACTCATCCAGTTAGTCAGTTATTGTTAGATGGATTAACTGTCGTTTCTAGTCAAGTAAGTCAGTTGGCTGGTCCTCCA GCACGTC GTTTGGGAGATCT TAT TGCTGACAGCGTGGCTCCTCGGTATTGGCAACCCAACTCTAGTATTAAAGCATGTGCTGTTTGTAAGGTTGAATTTCAAGGTTCATCAGATGATTCTGTTTGCAGCCGTAGTTCACT TATGA ] [+] EMBL CD060108 [ aggCCTCCATCCACGTCTGTTTGCGAGATCTATATATGCTGACAGCGTGGCTCCTCGGTATTGGCAACCCAACTCTAGTATTAAAGCATGTGCTGTTTGTAAGGTTGAATTTCAAGGTTCATCAGATGATTCTGTTTGCAGCCGTAGTTCACTATATGAGACAAAAATCCACTATCGATAACAAGCACTCAACATTATCTGCTGGTGATGATAGTCCTCAAAAAGATAAGGCGTCTACCGGCAAAAGATAATTCCATACTCAATCGGTCGTCATCGTTTTCAGATTCGTTAAATAAAGAAAAAAGTTCTAACTAAACCATTGAAGCCTTTTATTGATGACTTATCGAAACATCATTGTCGAGCTTGAGGTAGAGGTGTCTGAGCTAAGTGTTCAACTGGGCGTTTGCCTGTTCCAAGATCATGGATATGGAAGTGATGGAGTACGTGTA ] [+] EMBL CD090293 [ ATAATTCCATACTCAATCGGTCGTCATCGTTTCCAGATTCGTTAAATAAAGAAAAAAGTTCT ACTAAACCATTGAAGCCTTTTATTGATGACTTATCGAAACATCATTGTCGAGCTTGTGGTAGAGGTGTCTGTGCTAAGTGTTCAACTGGCCGTTTGCCTGTTCC AGATCAAGGATATGGAAGTGATGGTGTACGTGTTTGTGACCAGTGCTATGATGCTCGATTACAAGATAAAGTTATCGATTCAAAAACTCGTGTATCTGGAATGAATTATAACTCTCAAATCAATAACAATTCTTTAACTGGTCGGAAGGTAATTGAAATGTTATCTGCTACAGCTGATTATATAGCACCAATATATACTGGACCTAAAGAACTCGTTAAATCTCTTGCTCGTCCAGATTATTGGCAACCTGATGATCAATGTGTCTCGTGCAACGTATGTTCCGCCCCATTCGGCTCACGTTTAACTA ] [+] EMBL CD091088 [ TATCGATTCAAAAACTCGTGTATCTGGAATGAATTATAACTCTCAAATCAATAACAATTCTTTAACTGGTCGGAAGGTAATTGAAATGTTATCTGCTACAGCTGATTATATAGCACCAATATATACTGGACCTAAAGAACTCGTTAAATCTCTTGCTCGTCCAGATTATTGGCAACCTGATGATCAATGTGTCTCGTGCAACGTATGTTCCGCCCCATTCGGCTCACGTTTAACTATTCATCATTGTCGTTCTTGCGGTCAGGGTGTTTGCGGGTTTTGTTCCCAGCATTATCAACCTGTGCCTAAAAGAGGTCTTGATTTCCCTTCACGTGTGTGCGATCGTTGTTACCAACCAAACTTAAAGGATTATGAAACTTCTCATCGTCCAACTGTATCTGAACACCGAAGCTTAGATTTGGCTGGTAACGTACCAAATCAGCAAATGCAACGACGGAAGCG ] [+] EMBL CD157592 [ TTAACTATTCATCATTGTCGTTCTTGCGGTCAGGGTGTTTGCGGGTTTTGTTCCCAGCATTATCAACCTGTGCCTAAAAGAGGTCTTGATTTCCCTTCACGTGTGTGCGATCGTTGTTACCAACCAAACTTAAAGGATTATGAAACTTCTCATCGTCCAACTGTATCTGAACACCGAAGCTTA ] [-] EMBL CD091113 [ tnCGGNTTTTGTTCCCAGCATTATCAACCTGTGCCTAAAAGAGGTCTTGATTTCCCTTCACGTGTGTGCGATCGTTGTTACCAACCAAACTTAAAGGATTATGAAACTTCTCATCGTCCAACTGTATCTGAACACCGAAGCTTAGATTTGGCTGGTAACGTACCAAATCAGCAAATGCAACAACGGAAGCGTAACACTCAATACAACAATCCTAATGTAAACACTGCCCATAAAAAAAAATTCCGAGGGTTGAATTCACATTTTTCAACTGTGAAGTGTAGTTTATCAATGAGTTTATTTTTTTAACTCTTTAACATTCAGAAACACTTCTATATACATTGACGAACAAACACTGGATTATTGCTGCAATAATGTTAATGAATTTTACAAGTGACAAAAGGAATACGCCAATGCTACGT] consensusID : consensus_9007#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 94 fasta sequence [ACAACGATCGCACACACGTGAAGGGAAATCAAGACCTCTTTTAGGCACAGGTTGATAATGCTGGGAACAAATTTTTTTTTACACCCTGACCGCA] [+] EMBL CD115617 [ACAACGATCGCACACACGTGAAGGGAAATCAAGACCTCTTTTAGGCACAGGTTGATAATGCTGGGAACAAATTTTTTTTTACACCCTGACCGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9007#0 TGGTTACGTTTTAGAATGTCCAAGACATGGCACCATCTATCGTAGTCGTGGTTACTGGTC 60 consensus_9007#1 ------------------------------------------------------------ consensus_9007#0 TGGTAACGTAGAGCCAGAAATGAATCCTCAAGTACACTGGGAAATCGTACATGTTTGGCA 120 consensus_9007#1 ------------------------------------------------------------ consensus_9007#0 AGGAGAAAAGTCAATACTTTCGGGTACTCATCCAGTTAGTCAGTTATTGTTAGATGGATT 180 consensus_9007#1 ------------------------------------------------------------ consensus_9007#0 AACTGTCGTTTCTAGTCAAGTAAGTCAGTTGGCTGGTCCTCCAGCACGTCGTTTGGGAGA 240 consensus_9007#1 ------------------------------------------------------------ consensus_9007#0 TCTTATTGCTGACAGCGTGGCTCCTCGGTATTGGCAACCCAACTCTAGTATTAAAGCATG 300 consensus_9007#1 ------------------------------------------------------------ consensus_9007#0 TGCTGTTTGTAAGGTTGAATTTCAAGGTTCATCAGATGATTCTGTTTGCAGCCGTAGTTC 360 consensus_9007#1 ------------------------------------------------------------ consensus_9007#0 ACTTATGAGACAAAAATCCACTACCGATAAAAAGCACTCAACATTATCTGCTGGTGATGA 420 consensus_9007#1 ------------------------------------------------------------ consensus_9007#0 TAGTCCTCAAAAAGATAAGGCGTCTACCGGCAAAAGATAATTCCATACTCAATCGGTCGT 480 consensus_9007#1 ------------------------------------------------------------ consensus_9007#0 CATCGTTTTCAGATTCGTTAAATAAAGAAAAAAGTTCTACTAAACCATTGAAGCCTTTTA 540 consensus_9007#1 ------------------------------------------------------------ consensus_9007#0 TTGATGACTTATCGAAACATCATTGTCGAGCTTGAGGTAGAGGTGTCTGAGCTAAGTGTT 600 consensus_9007#1 ------------------------------------------------------------ consensus_9007#0 CAACTGGGCGTTTGCCTGTTCCAGATCATGGATATGGAAGTGATGGAGTACGTGTATGTG 660 consensus_9007#1 ------------------------------------------------------------ consensus_9007#0 ACCAGTGCTATGATGCTCGATTACAAGATAAAGTTATCGATTCAAAAACTCGTGTATCTG 720 consensus_9007#1 ------------------------------------------------------------ consensus_9007#0 GAATGAATTATAACTCTCAAATCAATAACAATTCTTTAACTGGTCGGAAGGTAATTGAAA 780 consensus_9007#1 ------------------------------------------------------------ consensus_9007#0 TGTTATCTGCTACAGCTGATTATATAGCACCAATATATACTGGACCTAAAGAACTCGTTA 840 consensus_9007#1 -----------------------ACAACGATCGCACACACGTGA---AGGGAAATCA--A 32 * * * * * ** ** * *** ** * consensus_9007#0 AATCTCTTGCTCGTCCAGATTATTGGCAACCTGATGATCAATGTGTCTCGTGCAACGTAT 900 consensus_9007#1 GACCTCTTTTAGGCACAGG---TTGATAATGCTGGGAACAAATTTTTTTTTACACCCTGA 89 * ***** * *** *** ** ** *** * * * * ** * * consensus_9007#0 GTTCCGCCCCATTCGGCTCACGTTTAACTATTCATCATTGTCGTTCTTGCGGTCAGGGTG 960 consensus_9007#1 CCGCA------------------------------------------------------- 94 * consensus_9007#0 TTTGCGGGTTTTGTTCCCAGCATTATCAACCTGTGCCTAAAAGAGGTCTTGATTTCCCTT 1020 consensus_9007#1 ------------------------------------------------------------ consensus_9007#0 CACGTGTGTGCGATCGTTGTTACCAACCAAACTTAAAGGATTATGAAACTTCTCATCGTC 1080 consensus_9007#1 ------------------------------------------------------------ consensus_9007#0 CAACTGTATCTGAACACCGAAGCTTAGATTTGGCTGGTAACGTACCAAATCAGCAAATGC 1140 consensus_9007#1 ------------------------------------------------------------ consensus_9007#0 AACGACGGAAGCGTAACACTCAATACAACAATCCTAATGTAAACACTGCCCATAAAAAAA 1200 consensus_9007#1 ------------------------------------------------------------ consensus_9007#0 AATTCCGAGGGTTGAATTCACATTTTTCAACTGTGAAGTGTAGTTTATCAATGAGTTTAT 1260 consensus_9007#1 ------------------------------------------------------------ consensus_9007#0 TTTTTTAACTCTTTAACATTCAGAAACACTTCTATATACATTGACGAACAAACACTGGAT 1320 consensus_9007#1 ------------------------------------------------------------ consensus_9007#0 TATTGCTGCAATAATGTTAATGAATTTTACAAGTGACAAAAGGAATACGCCAATGCTACG 1380 consensus_9007#1 ------------------------------------------------------------ consensus_9007#0 T 1381 consensus_9007#1 - |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||