These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9010#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1154 fasta sequence [TCGACGTACATTTTTGCTTGCTGTTCTTTTCGACATTATTTTAAGTTTCATTCTGTGGATTATATATGCTAAACAAACGTATCCTGGCAATGTTGGTCATGCAATGTTGGAAGAAATAAGCAATTATTCTTTCTCTAAATCACTTTTTGATACAGTTATGTTATCAGCTTTCCGGTTTGTTCTTATGGAAATTACTTATGGCGTAGTTCAAAGTCGCACTCCGTGGTGGTCCGCTATTTCAACTGGTTTAACAAGTTTAATTCTGGTTGTTAAGTGTTTCATTTTTGATTTTCATCAAAGGACTCCAGATAATCAGGGTCTAGCATATGCTGTTTTAATCACATCATTAATCATTTCATGGATTGAAACCACCTTCCTAATTTATCGTGTCATTCCTCAAGAAAAAGCTGCCAATCGTGTAACAATGTGTTTAAAAGAGCAGGATGAAACTCGAAGTTTGTTAAGTTCACGACTTGAAAATCGTGTTCCTTGGTATTCTGGTCTTTCTGTACGGTCTATGAGCAATGCAGATTTTTATACACCACAAGGTTCATTATTTGGAGATGAATCACCTGTAAAAATTCCG-AAATCGCATAATCTTGAAGCTGCTGTTGATGTAGCTGCTTTGTTACATCGTACCAATTCTTTACAAACGGAAATGTGGAATTTATATGAAAATGAAATTTGGGGTGATAATTCACCTTCTGTCAACATCAAGTATCCACTTCGATCTG-AAGCGTTACCTAATTATCCTGCTAAGGTTTATCGTCTAGAGGGTTTATTATCGGTTTCACCGTTCCATCTATTTAATGATATGGTTATAAATGTCCATGAAACGCCTAGCTGGAATACTACTCTGGCATCTGTTGAGTGTATCCAAGCTTTGGCTTCAGAGAATATTGACATCATACACAATATGGCTAAAGAGGCTGTCGGAGGTTTAATATCTGCCAGAGATTTTGTTCTGTTGAGATCATGGGGAATACATAACAATAATTGTTACTTTATATGTTGTACTTATGTTGAACATCCTAAATGTCCACCAATACCAAATTATGTACGTGCTGAACAAGTAATTAGTGCGTGTATATTTCGACCAATTCCTGATTGTCCAAATCAATGCAATTTAGTATGGTTCTTATGCAATGATTTAA] [-] EMBL CD095673 [TCGACGTACATTTTTGCTTGCTGTTCTTTTCGACATTATTTTAAGTTTCATTCTGTGGATTATATATGCTAAACAAACGTATCCTGGCAATGTTGGTCATGCAATGTTGGAAGAAATAAGCAATTATTCTTTCTCTAAATCACTTTTTGATACAGTTATGTTATCAGCTTTCCGGTTTGTTCTTATGGAAATTACTTATGGCGTAGTTCAAAGTCGCACTCCGTGGTGGTCCGCTATTTCAACTGGTTTAACAAGTTTAATTCTGGTTGTTAAGTGTTTCATTTTTGATTTTCATCAAAGGACTCCAGATAATCAGGGTCTAGCATATGCTGTTTTAATCACATCATTAATCATTTCATGGATTGAAACCACCTTCCTAATTTA ] [+] EMBL CD062136 [ CTTATGGCGTAGTTCAAAGTCGCACTCCGTGGTGGTCCGCTATTTCAACTGGTTTAACAAGTTTAATTCTGGTTGTTAAGTGTTTCATTTTTGATTTTCATCAAAGGACTCCAGATAATCAGGGTCTAGCATATGCTGTTTTAATCACATCATTAATCATTTCATGGATTGAAACCACCTTCCTAATTTATCGTGTCATTCCTCAAGAAAAAGCTGCCAATCGTGTAACAATGTGTTTAAAAGAGCAGGATGAAACTCGAAGTTTGTTAAGTTCACGACTTGAAAATCGTGTTCCTTGGTATTCTGGTCTTTCTGTACGGTCTATGAGCAATGCAGATTTTTATACACCACAAGGTTCATTATTTGGAGATGAATCACCTGTAAAAATTCCG AAATCGCATAATCTTGAAGCTGCTGTTGATGTAGCTGCTTTGTTACATCGTACCAATTCTTTACAAACGGAAATGTGGAATTTATATGAAAATGAAATTTGGGGTGATAATTCACCTTCTGTCAAGATCAAGTATCCACTTCGATCTGAAAGCG TACCTAATTATCCT ] [+] EMBL CD062221 [ CTTATGGCGTAGTTCAAAGTCGCACTCCGTGGTGGTCCGCTATTTCAACTGGTTTAACAAGTTTAATTCTGGTTGTTAAGTGTTTCATTTTTGATTTTCATCAAAGGACTCCAGATAATCAGGGTCTAGCATATGCTGTTTTAATCACATCATTAATCATTTCATGGATTGAAACCACCTTCCTAATTTATCGTGTCATTCCTCAAGAAAAAGCTGCCAATCGTGTAACAATGTGTTTAAAAGAGCAGGATGAAACTCGAAGTTTGTTAAGTTCACGACTTGAAAATCGTGTTCCTTGGTATTTTGGTCTTTCTGTACGGTCTATGAGCAATGCAGATTTTTATACACCACAAGGTTCATTATTTGGAGATGAATCACCTGTAAAAATTCCG AAATCGCATAATCTTGAAGCTGCTGTTGATGTAGCTGCTTTGTTACATCGTACCAATTCTTTACAAACGGAAATGTGGAATTTATATGAAAATGAAATTTGGGGTGATAATTCACCTTCTGTCAACATCAAGTATCCACTTCGATCTG AAGCGTTACCTA ] [+] EMBL CD116281 [ AATCATTTCATGGATTGAAACCACCTTCCTAATTTATCGTGTCATTCCTCAAGAAAAAGCTGCCAATCGTGTAACAATGTGTTTAAAAGAGCAGGATGAAACTCGAAGTTTGTTAAGTTCACGACTTGAAAATCGTGTTCCTTGGTATTCTGGTCTTTCTGTACGGTCTATGAGCAATGCCGATTTTTATACACCACAAGGTTCATTATTTGGAGATGAATCACCTGTAAAAATTCCG AAATCGCATAATCTTGAAGCTGCTGTTGATGTAGCTGCTTTGTTACATCGTACCAATTCTTTACAAACGGAAATGTGGAATTTATATGAAAATGAAATTTGGGGTGATAATTCACCTTCTGTCAACATCAAGTATCCACTTCGATCTG AAGCGTTACCTAATTATCCTGCTAAGGTTTATCGTCTAGAGGGTTTATTATCGGTTTCACCGTTCCATCTATTTAATGAT ] [-] EMBL CD069124 [ gtnATTCTGGTCTTTCTGTACGGTCTATGAGCAATGCAGATTTTTATACACCACAAGGTTCATTATTTGGAGATGAATCACCTGTAAAAATTCCGAAAATCGCATAATCTTGAAGCTGCTGTTGATGTAGCTGCTTTGTTACATCGTACCAATTCTTTACAAACGGAAATGTGGAATTTATATGAAAATGAAATTTGGGGTGATAATTCACCTTCTGTCAACATCAAGTATCCCTTTCGATCTG AAGCGTTACCTAATTATCCTGCTAAGGTTTATCGTTTAGAGGGTTTATTATCGGTTTCACCGTTCCATCTATTTAATGATATGGTTATAAATGTCCATGAAACGCCTAGCTGGAATACTACTCTGGCATCTGTTGAGTGTATCCAAGCTTTGGCTTCAGAGGATATTGACATCATAt ] [-] EMBL CD066727 [ TCAAGTATCCACTTCGATCTG AAGCGTTACCTAATTATCCTGCTAAGGTTTATCGTCTAGAGGGTTTATTATCTGTTTCACCGTTCCATCTATTTAATGATATGGTTATAAATGTCCATGAAACGCCTAGCTGGAATACTACTCTGACATCTGTTGAGTGTATCCAAGCTTTGGCTTCAGAGAATATTGACATCATACACAATATGGCTAAAGAGGCTGTCGGAGGTTTAATATCTGCCAGAGATTTTGTTCTGTTGAGATCATGGGGAATACATAACAATAATTGTTACTTTATATGTTGTACTTATGT ] [+] EMBL CD077756 [ AGAAT TCGTCA CGTGGACAATATGGCTAAAGAGGCTGTCGGAGGTTTAATATCTGCCAGAGATTTTGTTCTGTTGAGATCATGGGGAATACATAACAATAATTGTTACTTTATATGTTGTACTTCTGTTGAACATCCTAAATGTCCACCAATACCAAATTATGTACGTGCTGAACAAGTAATTAGTGCGTGTATATTTCGACCAATTCCTGATTGTCCAAATCAATGCAATTTAGTATGGTTCTTATGCAATGATTTAA] consensusID : consensus_9010#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 429 fasta sequence [GGTCGACTCTAGAGTGATCCCCTCATAGGTTCGCAGGGAAACCACCTTCCTAATTTATCGTGTCATTCCTCAAGAAAAAGCTGCCAATCGTGTAACAATGTGTTTAAAAGAGCAGGATGAAACTCGAAGTTTGTTAAGTTCACGACTTGAAAATCGTGTTCCTTGGTATTCTGGTCTTTCTGTACGGGCTATGAGCAATGCAGATTTTTATACACCACAAGGTTCATTATTTGGAGATGAATCACCTGTAAAAATTCCGAAATCGCATAATCTTGAAGCTGCTGTTGATGTAGCTGCTTTGTTACATCGTACCAATTCTTTACAAACGGAAATGTGGAATTTATATGAAAATGAAATTTGGGGTGATAATTCACCTTCTGTCAACATCAAGTATCCACTTCGATCTGAAGCGTTACCTAATTACCCTGC] [+] EMBL CD060737 [GGTCGACTCTAGAGTGATCCCCTCATAGGTTCGCAGGGAAACCACCTTCCTAATTTATCGTGTCATTCCTCAAGAAAAAGCTGCCAATCGTGTAACAATGTGTTTAAAAGAGCAGGATGAAACTCGAAGTTTGTTAAGTTCACGACTTGAAAATCGTGTTCCTTGGTATTCTGGTCTTTCTGTACGGGCTATGAGCAATGCAGATTTTTATACACCACAAGGTTCATTATTTGGAGATGAATCACCTGTAAAAATTCCGAAATCGCATAATCTTGAAGCTGCTGTTGATGTAGCTGCTTTGTTACATCGTACCAATTCTTTACAAACGGAAATGTGGAATTTATATGAAAATGAAATTTGGGGTGATAATTCACCTTCTGTCAACATCAAGTATCCACTTCGATCTGAAGCGTTACCTAATTACCCTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9010#0 TCGACGTACATTTTTGCTTGCTGTTCTTTTCGACATTATTTTAAGTTTCATTCTGTGGAT 60 consensus_9010#1 ------------------------------------------------------------ consensus_9010#0 TATATATGCTAAACAAACGTATCCTGGCAATGTTGGTCATGCAATGTTGGAAGAAATAAG 120 consensus_9010#1 ------------------------------------------------------------ consensus_9010#0 CAATTATTCTTTCTCTAAATCACTTTTTGATACAGTTATGTTATCAGCTTTCCGGTTTGT 180 consensus_9010#1 ------------------------------------------------------------ consensus_9010#0 TCTTATGGAAATTACTTATGGCGTAGTTCAAAGTCGCACTCCGTGGTGGTCCGCTATTTC 240 consensus_9010#1 ------------------------------------------------------------ consensus_9010#0 AACTGGTTTAACAAGTTTAATTCTGGTTGTTAAGTGTTTCATTTTTGATTTTCATCAAAG 300 consensus_9010#1 ------------------------------------------------------------ consensus_9010#0 GACTCCAGATAATCAGGGTCTAGCATATGCTGTTTTAATCACATCATTAATCATTTCATG 360 consensus_9010#1 ---------------------GGTCGACTCTAGAGTGATCCCCTCATAGGT----TCGCA 35 * * ** * *** * **** * ** consensus_9010#0 GATTGAAACCACCTTCCTAATTTATCGTGTCATTCCTCAAGAAAAAGCTGCCAATCGTGT 420 consensus_9010#1 GG--GAAACCACCTTCCTAATTTATCGTGTCATTCCTCAAGAAAAAGCTGCCAATCGTGT 93 * ******************************************************** consensus_9010#0 AACAATGTGTTTAAAAGAGCAGGATGAAACTCGAAGTTTGTTAAGTTCACGACTTGAAAA 480 consensus_9010#1 AACAATGTGTTTAAAAGAGCAGGATGAAACTCGAAGTTTGTTAAGTTCACGACTTGAAAA 153 ************************************************************ consensus_9010#0 TCGTGTTCCTTGGTATTCTGGTCTTTCTGTACGGTCTATGAGCAATGCAGATTTTTATAC 540 consensus_9010#1 TCGTGTTCCTTGGTATTCTGGTCTTTCTGTACGGGCTATGAGCAATGCAGATTTTTATAC 213 ********************************** ************************* consensus_9010#0 ACCACAAGGTTCATTATTTGGAGATGAATCACCTGTAAAAATTCCGAAATCGCATAATCT 600 consensus_9010#1 ACCACAAGGTTCATTATTTGGAGATGAATCACCTGTAAAAATTCCGAAATCGCATAATCT 273 ************************************************************ consensus_9010#0 TGAAGCTGCTGTTGATGTAGCTGCTTTGTTACATCGTACCAATTCTTTACAAACGGAAAT 660 consensus_9010#1 TGAAGCTGCTGTTGATGTAGCTGCTTTGTTACATCGTACCAATTCTTTACAAACGGAAAT 333 ************************************************************ consensus_9010#0 GTGGAATTTATATGAAAATGAAATTTGGGGTGATAATTCACCTTCTGTCAACATCAAGTA 720 consensus_9010#1 GTGGAATTTATATGAAAATGAAATTTGGGGTGATAATTCACCTTCTGTCAACATCAAGTA 393 ************************************************************ consensus_9010#0 TCCACTTCGATCTGAAGCGTTACCTAATTATCCTGCTAAGGTTTATCGTCTAGAGGGTTT 780 consensus_9010#1 TCCACTTCGATCTGAAGCGTTACCTAATTACCCTGC------------------------ 429 ****************************** ***** consensus_9010#0 ATTATCGGTTTCACCGTTCCATCTATTTAATGATATGGTTATAAATGTCCATGAAACGCC 840 consensus_9010#1 ------------------------------------------------------------ consensus_9010#0 TAGCTGGAATACTACTCTGGCATCTGTTGAGTGTATCCAAGCTTTGGCTTCAGAGAATAT 900 consensus_9010#1 ------------------------------------------------------------ consensus_9010#0 TGACATCATACACAATATGGCTAAAGAGGCTGTCGGAGGTTTAATATCTGCCAGAGATTT 960 consensus_9010#1 ------------------------------------------------------------ consensus_9010#0 TGTTCTGTTGAGATCATGGGGAATACATAACAATAATTGTTACTTTATATGTTGTACTTA 1020 consensus_9010#1 ------------------------------------------------------------ consensus_9010#0 TGTTGAACATCCTAAATGTCCACCAATACCAAATTATGTACGTGCTGAACAAGTAATTAG 1080 consensus_9010#1 ------------------------------------------------------------ consensus_9010#0 TGCGTGTATATTTCGACCAATTCCTGATTGTCCAAATCAATGCAATTTAGTATGGTTCTT 1140 consensus_9010#1 ------------------------------------------------------------ consensus_9010#0 ATGCAATGATTTAA 1154 consensus_9010#1 -------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||