cluster # 9016

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 9016 cluster # 9016 Sequences # 8 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9016#0 length = 598 sequences # 6

consensus_9016#1 length = 467 sequences # 1
consensus_9016#2 length = 463 sequences # 1

consensusID : consensus_9016#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 598
fasta sequence

                              [TTTATTTAGTTATTTACACTGTCAATAAATAAAAACTAAAATCAACTGGCTGAACTATATAGGAAGTATAAATTCCTAAACTATAAACATTTATATAATAATCTTAAAATCAGGGTCGAGTTGATCAACCGGGGGCAGCTGAACACGGGAAGCAGGGATTAGATCTTTATCTACAAGGGGCAGGCCATCTCTTCTTCGTCTTTCTATCTCCAAATATGCTTCTCTCCAAGTCCAGTCAGAAAAACTACGATTAGGAGAGTAATACAAATACAAAAACAGCGGGAAAATCCAGAGTGTAAGAAGAGCAAAAGGTACAAGCTGTGATAGGGAAATATCTTCGTTCTTGTCAGTCTGGTGATAACCCGTGCTAATCCAATCCTTCGTCATTTCTTCAACTTCTTTCTCTATTTGTCTTTTATCAGCTTCCGGAATATTGTTTTCCTTTAGTATGTGTTTCATTTCATTCAACTCCATATGCATTGAGATAGTAGTACATATATGTCTTTTTACGTGTGGAGTCAAAACAGCTGTAATGCGACTAAAATTTCTAGGGCCAAAAACACTTAAAGCTGACAACTTTAGGGCCGNCATCTGCAAG]

[+] EMBL AW017180             [TTTATTTAGTTATTTACACTGTCAATAAATAAAAACTAAAATCAACTGGCTGAACTATATAGGAAGTATAAATTCCTAAACTATAAACATTTATATAATAATCTTAAAATCAGGGTCGAGTTGATCAACCGGGGGCAGCTGAACACGGGAAGCAGGGATTAGATCTTTATCTACAAGGGGCAGGCCATCTCTTCTTCGTCTTTCTATCTCCAAATATGCTTCTCTCCAAGTCCAGTCAGAAAAACTACGATTAGGAGAGTAATACAAATACAAAAACAGCGGGAAAATCCAGAGTGTAAGAAGAGCAAAAGGTACAAGCTGTGATAGGGAAATATCTTCGTTCTTGTCAGTCTGGTGATAACCCGTGCTAATCCAATCCTTCGTCATTTCTTCAACTTCTTTCTCTATTTGTCTTTTATCAGCTTCCGGAATATTGTTTTCCTTTAGTATGTGTTTCATTTCATTCAACTCCATATGCATTGAGATAGTAGTACATATATGTCTTTTTACGTGTGGAGTCAAAACAGCTGTAATGCGACTAAAATTTCTAGGGCCAAAAACACTTAAAGCTGACAACTTTAGGGCCGNCATCTGCAAG]
[-] EMBL CD082371             [     TTAGTTATTTACACTGTCAATAAATAAAAACTAAAATCAACTGGCTGAACTATATAGGAAGTATAAATTCCTAAACTATAAACATTTATATAATAATCTTAAAATCAGGGTCGAGTTGATCAACCGGGGGCAGCTGAACACGGGAAGCAGGGATTAGATCTTTATCTACAAGGGGCAGGCCATCTCTTCTTCGTCTTTCTATCTCCAAATATGCTTCTCTCCAAGTCCAGTCAGAAAAACTACGATTAGGAGAGTAATACAAATACAAAAACAGCGGGAAAATCCAGAGTGTAAGAAGAGCAAAAGGTACAAGCTGTGATAGGGAAATATCTTCGTTCTTGTCAGTCTGGTGATAACCCGTGCTAATCCAATCCTTCGTCATTTCTTCAACTTCTTTCTCTATTTGTCTTTTATCAGCTTCCGGAATATTGTTTTCCTTTAGTATGTGTTTCATTTCATTCAACTCCATATGCATTGAGATAGTAGTACATATATGTCTTTTTACGTGTGGAGTCAAAACAagtttcc                                                                 ]
[+] EMBL CD075973             [                        acAAATAAAAACTAAAATCAACTGGCTGAACTATATAGGAAGTATAAATTCCTAAACTATAAACATTTATATAATAATCTTAAAATCAGGGTCGAGTTGATCAACCGGGGGCAGCTGAACACGGGAAGCAGGGATTAGATCTTTATCTACAAGGGGCAGGCCATCTCTTCTTCGTCTTTCTATCTCCAAATATGCTTCTCTCCAAGTCCAGTCAGAAAAACTACGATTAGGAGAGTAATACAAATACAAAAACAGCGGGAAAATCCAGAGTGTAAGAAGAGCAAAAGGTACAAGCTGTGATAGGGAAATATCTTCGTTCTTGTCAGTCTGGTGATAACCCGTGCTAATCCAATCCTTCGTCATTTCTTCAACTTCTTTCTCTATTTGTCTTTTATCAGCTTCCGGAATATTGTTTTCCTTTAGTATGTGTTTCATTTCATTCAACTCCATATGCATTGAGATAGTAGTACATATATGTCTTTTTACGTGTGGAGTCAAAACAG                                                                       ]
[+] EMBL CD181766             [                                                              GAAGTATAAATTCCTAAACTATAAACATTTATATAATAATCTTAAAATCAGGGTCGAGTTGATCAACCGGGGGCAGCTGAACACGGGAAGCAGGGATTAGATCTTTATCTACAAGGGGCAGGCCATCTCTTCTTCGTCTTTCTATCTCCAAATATGCTTCTCTCCAAGTCCAGTCAGAAAAACTACGATTAGGAGAGTAATACAAATACAAAAACAGCGGGAAAATCCAGAGTGTAAGAAGAGCAAAAGGTACAAGCTGTGATAGGGAAATATCTTCGTTCTTGTCAGTCTGGTGATAACCg                                                                                                                                                                                                                                          ]
[+] EMBL CD061911             [                                                                                                                                              ACACGGGAAGCAGGGATTAGATCTTTATCTACAAGGGGCAGGCCATCTCTTCTTCGTCTTTCTATCTCCAAATATGCTTCTCTCCAAGTCCAGTCAGAAAAACTACGATTAGGAGAGTAATACAAATACAAAAACA                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BG932479             [                                                                                                                                                                                    CAGGCCATCTCTTCTTCGTCTTTCTATCTCCAAATATGCTTCTCTCCAAGTCCAGTCAGAAAAACTACGATTAGGAGAGTAATACAAATACAAAAACAGCGGGAAAATCCAGAGTGTAAGAAGAGCAAAAGGTACAAGCTGTGATAGGGAAATATCTTCGTTCTTGTCAGTCTGGTGATAACCCGTGCTAATCCAATCCTTCGTCATTTCTTCAACTTCTTTCTCTATTTGTCTTTTATCAGCT                                                                                                                                                                              ]




>consensus_9016#0
TTTATTTAGTTATTTACACTGTCAATAAATAAAAACTAAAATCAACTGGCTGAACTATAT
AGGAAGTATAAATTCCTAAACTATAAACATTTATATAATAATCTTAAAATCAGGGTCGAG
TTGATCAACCGGGGGCAGCTGAACACGGGAAGCAGGGATTAGATCTTTATCTACAAGGGG
CAGGCCATCTCTTCTTCGTCTTTCTATCTCCAAATATGCTTCTCTCCAAGTCCAGTCAGA
AAAACTACGATTAGGAGAGTAATACAAATACAAAAACAGCGGGAAAATCCAGAGTGTAAG
AAGAGCAAAAGGTACAAGCTGTGATAGGGAAATATCTTCGTTCTTGTCAGTCTGGTGATA
ACCCGTGCTAATCCAATCCTTCGTCATTTCTTCAACTTCTTTCTCTATTTGTCTTTTATC
AGCTTCCGGAATATTGTTTTCCTTTAGTATGTGTTTCATTTCATTCAACTCCATATGCAT
TGAGATAGTAGTACATATATGTCTTTTTACGTGTGGAGTCAAAACAGCTGTAATGCGACT
AAAATTTCTAGGGCCAAAAACACTTAAAGCTGACAACTTTAGGGCCGNCATCTGCAAG

consensusID : consensus_9016#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 467
fasta sequence

                              [CTCAAAAAAAACGGCGAAAAATGTTTATATTATAGGCATAAAGGTAAATGATTTATATTACTTTAAGTGCTCCGCCAACAGTCACATGATTAGTGGTTGGAAGTTGGTCTTGCTTCAGTTATGTGGACAAAGTTCTAATAAATAGTAGTTCCTTTCTTCATCACACTCTTGAGTGCCATGTTATTGATGTCGTTCTACTGAGTTGGTAATGTCACAAGTTTCAATACATGGGTTCCCTCACCCTGTTATTACATGTCATAAACAACGTCAACCTTCTTATGGGTTGACTTTTCCGTGACGTTTTTATTCCCTACATTTGTTTCCAGTTATTGTCTACTGTTGAAATAATTTATTTCCTTTCAGCTAGTTTTTCATCTTAATATTTATTGATTGATTTTTATCAAACTGCTTTTAGTTATTCTGACTGGACTTGGAGAGAAGCATATTTGGAGATAGAAAGACGAAGA]

[+] EMBL CD145193             [CTCAAAAAAAACGGCGAAAAATGTTTATATTATAGGCATAAAGGTAAATGATTTATATTACTTTAAGTGCTCCGCCAACAGTCACATGATTAGTGGTTGGAAGTTGGTCTTGCTTCAGTTATGTGGACAAAGTTCTAATAAATAGTAGTTCCTTTCTTCATCACACTCTTGAGTGCCATGTTATTGATGTCGTTCTACTGAGTTGGTAATGTCACAAGTTTCAATACATGGGTTCCCTCACCCTGTTATTACATGTCATAAACAACGTCAACCTTCTTATGGGTTGACTTTTCCGTGACGTTTTTATTCCCTACATTTGTTTCCAGTTATTGTCTACTGTTGAAATAATTTATTTCCTTTCAGCTAGTTTTTCATCTTAATATTTATTGATTGATTTTTATCAAACTGCTTTTAGTTATTCTGACTGGACTTGGAGAGAAGCATATTTGGAGATAGAAAGACGAAGA]




>consensus_9016#1
CTCAAAAAAAACGGCGAAAAATGTTTATATTATAGGCATAAAGGTAAATGATTTATATTA
CTTTAAGTGCTCCGCCAACAGTCACATGATTAGTGGTTGGAAGTTGGTCTTGCTTCAGTT
ATGTGGACAAAGTTCTAATAAATAGTAGTTCCTTTCTTCATCACACTCTTGAGTGCCATG
TTATTGATGTCGTTCTACTGAGTTGGTAATGTCACAAGTTTCAATACATGGGTTCCCTCA
CCCTGTTATTACATGTCATAAACAACGTCAACCTTCTTATGGGTTGACTTTTCCGTGACG
TTTTTATTCCCTACATTTGTTTCCAGTTATTGTCTACTGTTGAAATAATTTATTTCCTTT
CAGCTAGTTTTTCATCTTAATATTTATTGATTGATTTTTATCAAACTGCTTTTAGTTATT
CTGACTGGACTTGGAGAGAAGCATATTTGGAGATAGAAAGACGAAGA

consensusID : consensus_9016#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 463
fasta sequence

                              [TCGACATTCTATCTCCAACTGTGCTACACTCCAAGTCCAGACCGAAAAACTACAAGACAGCCTGATAAAAATCATTCACTAAATATTACGATGAAAAACTAGCTGAAAGGAAATAAATTATGTCGACAGTAGACTGTAACTGCAAACAAATGTACGGAATAAAACCGTCACGGAAAAGCCAACCCATAAGAAGGTTGACGATGCTTATGACATGTAATAACAGGGTGAGGGAACCCATGTATTGAAACTTGTGACATTACCAACTCAGTACAACGACATGCATAACATGGCACTCAAGAGTGTGATGAATAAAGGAACTACTATTTATTAGAACTTTGACCACATAACTGAAGCAAGACCAACTTCCAACCACTAATCATGTGACTGTTGGTGGAGCACTTAAAGTAATATAAATCATTTACCTTTATGCCTATAATATAAACATTGTTCACGTTTTTTTTGA]

[+] EMBL CD145314             [TCGACATTCTATCTCCAACTGTGCTACACTCCAAGTCCAGACCGAAAAACTACAAGACAGCCTGATAAAAATCATTCACTAAATATTACGATGAAAAACTAGCTGAAAGGAAATAAATTATGTCGACAGTAGACTGTAACTGCAAACAAATGTACGGAATAAAACCGTCACGGAAAAGCCAACCCATAAGAAGGTTGACGATGCTTATGACATGTAATAACAGGGTGAGGGAACCCATGTATTGAAACTTGTGACATTACCAACTCAGTACAACGACATGCATAACATGGCACTCAAGAGTGTGATGAATAAAGGAACTACTATTTATTAGAACTTTGACCACATAACTGAAGCAAGACCAACTTCCAACCACTAATCATGTGACTGTTGGTGGAGCACTTAAAGTAATATAAATCATTTACCTTTATGCCTATAATATAAACATTGTTCACGTTTTTTTTGA]




>consensus_9016#2
TCGACATTCTATCTCCAACTGTGCTACACTCCAAGTCCAGACCGAAAAACTACAAGACAG
CCTGATAAAAATCATTCACTAAATATTACGATGAAAAACTAGCTGAAAGGAAATAAATTA
TGTCGACAGTAGACTGTAACTGCAAACAAATGTACGGAATAAAACCGTCACGGAAAAGCC
AACCCATAAGAAGGTTGACGATGCTTATGACATGTAATAACAGGGTGAGGGAACCCATGT
ATTGAAACTTGTGACATTACCAACTCAGTACAACGACATGCATAACATGGCACTCAAGAG
TGTGATGAATAAAGGAACTACTATTTATTAGAACTTTGACCACATAACTGAAGCAAGACC
AACTTCCAACCACTAATCATGTGACTGTTGGTGGAGCACTTAAAGTAATATAAATCATTT
ACCTTTATGCCTATAATATAAACATTGTTCACGTTTTTTTTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9016#0      TTTATTTAGTTATTTACACTGTCAATAAATAAAAACTAAAATCAACTGGCTGAACTATAT 60
consensus_9016#2      -----------------------------TCGACATTCTATCT--CCAACTGTGCTACAC 29
consensus_9016#1      ---------------------CTCAAAAAAAACGGCGAAAAATGTTTATATTATAGGCAT 39
                                                             *          *       * 

consensus_9016#0      AGGAAGTATAAATTCCTAA-ACTATAA-ACATTTATATAATAATCTTAAAATCAGGGTCG 118
consensus_9016#2      TCCAAGTCCAGACCGAAAA-ACTACAAGACAGCCTGATAAAAATCATTCACTAAATATTA 88
consensus_9016#1      AAAGGTAAATGATTTATATTACTTTAA-GTGCTCCGCCAACAGTCACATGATTAGTGGTT 98
                                 *     *  ***  **           ** * **      * *      

consensus_9016#0      AGTTGATCAACCGGGGGCAGCTGAACACGGGAAGCAGGGATTAGATCTTTATCTACAAGG 178
consensus_9016#2      CGATGAAAAACTAGCTGAAAGGAAATAAATTATGTCGACAGTAGA-CTGTAACTGCAAA- 146
consensus_9016#1      GGAAGTTGGTCTTGCTTCAGTTATGTGGACAAAGTTC-TAATAAA-TAGTAGTTCCTTTC 156
                       *  *     *  *    *            * *     * ** *    **  * *    

consensus_9016#0      GGCAGGCCATCTCTTCTTCGTCTTTCTATCTCCAAATATGCTTCTCTCCAAGTCCAGTCA 238
consensus_9016#2      -------CAAATGTACGGAATAAAACCGTCACGGAAAA--------GCCAA--CCCATAA 189
consensus_9016#1      TTCATCACA-CTCTTGAGTGCCATGTTATTGATGTCGTTCTACTGAGTTGG---TAATGT 212
                             **  * *              *                            *  

consensus_9016#0      GAAAAACTACGATTAGGAGAGTAATACAAATACAAAAACAGCGGGAAAATCCAGAGTGTA 298
consensus_9016#2      GAAGGTTGACGAT-----GCTTATGACATGTAATAACAGGGTGAGGGAACCCATGTATTG 244
consensus_9016#1      CACAAGTTTCAATACATGGGTTCCCTCACCCTGTTATTACATGTCATAAACAACGTCAAC 272
                       *       * **     *  *    **       *      *    ** * *       

consensus_9016#0      AGAAGAGCAAAAGGTACAAGCTGTGATAGGGAAATATCTT-CGTTCTTGTCAGTCTGGTG 357
consensus_9016#2      AAACTTGTGACATTACCAACTCAGTACAACGACATGCATAACATGGCACTCAAGAGTGTG 304
consensus_9016#1      CTTCTTATGGGTTGACTTTTCCGTGACGTTTTTATTCCCTACATTTGTTTCCAGTTATTG 332
                                               *       **      * *     **       **

consensus_9016#0      ATAACCCGTGCTAATCCAATCCTTCGTCATTTCTTCAACTTCTTTCTCTATTTGTCTTTT 417
consensus_9016#2      ATGAATAAAGGAACTACTATTTATTAGAACTTTGACCACATAACTGAAGCAAGACCAACT 364
consensus_9016#1      TCTACTGTTGAAA---TAATTTATT-TCCTTTCAGCTAGTTTTTCATCTTAATATTTATT 388
                         *     *  *     **   *      **   * *  *                  *

consensus_9016#0      -ATCAGCTTCCGGAATATTGTTTTCCTTTAGTATGTGTTTCATTTCATTCAACTCCATAT 476
consensus_9016#2      -TCCAACCACT--AATCATGTGACTGTTGGTGGAGCACTTAAAGTAATATAAATCATTTA 421
consensus_9016#1      GATTGATTTTTATCAAACTGCTTTTAGTTATTCTG-ACTGGACTTGGAGAGAAGC---AT 444
                                    *   **       *      *   *  *  *      *  *     

consensus_9016#0      GCATTGAGATAGTAGTACATATATGTCTTTTTACGTGTGGAGTCAAAACAGCTGTAATGC 536
consensus_9016#2      CCTTTATGCCTATAATATAAACAT---TGTTCACGTTTTTTTTGA--------------- 463
consensus_9016#1      ATTTGGAGATAGAAAGACGAAGA------------------------------------- 467
                         *   *     *  *   * *                                     

consensus_9016#0      GACTAAAATTTCTAGGGCCAAAAACACTTAAAGCTGACAACTTTAGGGCCGNCATCTGCA 596
consensus_9016#2      ------------------------------------------------------------
consensus_9016#1      ------------------------------------------------------------
                                                                                  

consensus_9016#0      AG 598
consensus_9016#2      --
consensus_9016#1      --