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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9022#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1076 fasta sequence
[ATTTGCATGTAAGCCTGAATTTGTCCCAGAAAAATGGGGTAAGTGTATCCAAAGTGATCCATGTCGTCCAGGCAGACAAGTACGTCAATTATCGTGCATTTCTGTACAAGTTAATGGATCACTTCGCGAATTGCCAATGGCAGCCTGCTATATGACTGGGAAAGCAATTCAACCTACATGGCGTCGATGTTTTGAAGAAAGTTCAAGAAAATGTGACAGCAAACCACCAATGATTAATACTGACACTTTAACTATTGTTCAGATGAGAAAAGTGAAAGTGATTGATTTAAAAGTCGGCCAGCAAGCATTCGTAATACCATTTACCCGTGTAACTGTACGATGTCCTGTACAATATTTTACAGCACAAGAATTACAATGGGCTAACCCAAACCATGGAATATTAGCCTATACTGGAGCAATATCTGATAGAATAAGGGTAGATAAACGAGGAAGGT-TACACATACGAAGTTTCCGTCTCATTGACGAAGGTGACTGGACGTGCATAGCTGGTTCAATGAATGCCACAGTTACATTAACAGCTAGAACTCCAGCAGCAGGGTTTCACGA-TTGGGTGCAAAGAAACAGATTATGGACCAAGGGTATGCTCAGTGATGATCCTAAGGCAATAGCTGTAAATCATGAAATTATTCAATGGGTTGTTGGACCATGGAGTACATGTTCTACAAGTTGTGGCCAAACTGGACAACAATTTCGTGTCGTCAGATGTGAAAAAGTTGATAGTCGATTCTATCAAATACTGAATGATCAAGTATGCATTGATAAACTATTGCCAAAACCACCAAGTACACGAAAGTGTTTAGAAAGTAACAAATGTCCAGCATGGTTCGTTGAAAACCGTGACACATCTGTTTGTACAGATCGGTGTTTAGATGTTGGTAAAGGTTCAATTAGTGGAAATTTAGTCTGTATGATTGGTGAGAGAACCGTCGCCACAAAATATTGCGATAAATTAGATAAACCAAATATGGAATGTGAAAACCCTATATGTCAAGTACGATGGAACGTCAGTAATTGGTCTCAATGCTCACGTTCATGTGGTGGAGTTGGTGTTCAAG]
[-] EMBL CD062426 [ATTTGCATGTAAGCCTGAATTTGTCCCAGAAAAATGGGGTAAGTGTATCCAAAGTGATCCATGTCGTCCAGGCAGACAAGTACGTCAATTATCGTGCATTTCTGTACAAGTTAATGGATCACTTCGCGAATTGCCAATGGCAGCCTGCTATATGACTGGGAAAGCAATTCAACCTACATGGCGTCGATGTTTTGAAGAAAGTTCAAGAAAATGTGACAGCAAACCACCAATGATTAATACTGACACTTTAACTATTGTTCAGATGAGAAAAGTGAAAGTGATTGATTTAAAAGTCGGCCAGCAAGCATTCGTAATACCATTTACCCGTGTAACTGTACGATGTCCTGTACAATATTTTACAGCACAAGAATTACAATGGGCTAACCCAAACCATGGAATATTAGCCTATACTGGAGCAATATCTGATAGAATAAGGGTAGATAAACGAGGAAGGT TACACATACGAAGTTTCCGTCTCATTGACGAAGGTGACTGGACGTGCATAGCTGGTTCAATGAATGCCACAGTTACATTAACAGCT AACTCggggat ]
[-] EMBL CD125937 [ ATTTACCCGTGTAACTGTACGATGTCCTGTACAATATTTTACAGCACAAGAATTACAATGGGCTAACCCAAACCATGGAATATTAGCCTATACTGGAGCAATATCTGATAGAATAAGGGTAGATAAACGAGGAAGGT TACACATACGAAGTTTCCGTCTCATTGACGAAGGTGACTGGACGTGCATAGCTGGTTCAATGAATGCCACAGTTACATTAACAGCTAGAACTCCAGCAGCAGGGTTTCACGAGTTGGGTGCAAAGAAACAGATTATG ]
[-] EMBL CD140832 [ TTTACCCGTGTAACTGTACGATGTCCTGTACAATATTTTACAGCACAAGAATTACAATGGGCTAACCCAAACCATGGAATATTAGCCTATACTGGAGCAATATCTGATAGAATAAGGGTAGATAAACGAGGAAGGT TACACATACGAAGTTTCCGTCTCATTGACGAAGGTGACTGGACGTGCATAGCTGGTTCAATGAATGCCACAGTTACATTAACAGCTAGAACTCCAGCAGCAGGGTTTCACGA TTGGGTGCAAAGAAACAGATTATGGACCAAGGGTATGCTCAGTGATGATCCTAAGGCAATAGCTGTAAATCATGAAATTATTCAATGGGTTGTTGGACCATGGAGTACATGTTCTACAAGTTGTGGCCAAACTGGACAACAATTTCGTGTCGTCAGATGTGAAAAAGTTGATAGTCGATTCTATC ]
[-] EMBL CD140855 [ AATATTTTACAGCACAAGAATTACAATGGGCTAACCCAAACCGTGGAATATTAGCCTATACTGGAGCAATATCTGATAGAATAAGGGTAGATAAACGAGGAAGGT TACACATACGTAGTTTCCGTCTCATTGACGAAGGTGACTGGACGTGCATAGCTGGTTCAATGAATGCCACAGTTACATTAACAGCTAGAACTCCAGCAGCAGGGTTTCACGA TTGGGTGCAAAGAAACAGATTATGGACCAAGGGTATGCTCAGTGATGATCCTAAGGCAATAGCTGTAAATCATGAAATTATTCAATGGGTTGTTGGACCATGGAGTACATGTTCTACAAGTTGTGGCCAAACTGGACGACAATTTCGTGTCGTCAGATGTGAAAAAGTTGATAGTCGATTCTATC ]
[-] EMBL CD140815 [ TTACAATGGGCTAACCCAAACCATGGAATATTAGCCTATACTGGAGCAATATCTGATAGAATAAGGGTAGATAAACGAGGAAGGT TACACATACGAAGTTTCCGTCTCATTGACGAAGGTGACTGGACGTGCATAGCTGGTTCAATGAATGCCACAGTTACATTAACAGCTAGAACTCCAGCAGCAGGGTTTCACGA TTGGGTGCAAAGAAACAGATTATGGACCAAGGGTATGCTCAGTGTTGATCCTAAGGCAATAGCTGTAAATCATGAAATTATTCAATGGGTTGTTGGACCATGGAGTACATGTTCTACAAGTTGTGGCCAAACTGGACAACAATTTCGTGCCGTCAGATGTGAAAAAGTTGATAGTCGATTCTATC ]
[+] EMBL CD064277 [ AGGTATACACATACGAAGTAACCGTCTCATGGACGAAGGTGACTGGACGTGCATAGCTGGTTCAATGAATGCCACAGTTACATTAACAGCTAGAACTCCAGCAGCAGGGTTTCACGA TTGGGTGCAAAGAAACAGATTATGGACCAAGGGTATGCTCAGTGATGATCCTAAGGCAATAGCTGTAAATCATGAAATTATTCAATGGGTTGTTGGACCATGGAGTACATGTTCTACAAGTTGTGGCCAAACTGGACAACAATTTCGTGTCGTCAGATGTGAAAAAGTTGATAGTCGATTCTAT ]
[+] EMBL AI068203 [ CACATACGAAGTTTCCGTCTCATTGACGAAGGTGACTGGACGTGCATAGCTGGTTCAATGAATGCCACAGTCACATTAACAGCTAGAACTCCAGCAGCAGGGTTTCACGA TTGGGTGCAAAGAAACAGATTATGGACCAAGGGTATGCTCAGTGATGATCCTAAGGCAATAGCTGTAAATCATGAAATTATTCAATGGGTTGTTGGACCATGGAGTACATGTTCTACAAGTTGTGGCCAAACTGGACAACAATTTCGTGTCGTCAGATGTGAAAAAGTTGATAGTCGATTCTATCAAATACTGAATGATCAAGTATGCATTGATAAACTATTGCCAAAACCACCAAGTACACGAAAGTGTTTAGAAAGTAACAAATGTCCAGCATGGTTCGTTGAAAACCGTGACACATCTGTTTGTACAGATCGGTGTTTAGATGTTGGTAAAGGTTCAATTAGTGGAAATTTAGTCTGTATGATTGGTGAGAGAACCGTCGCCACAAAATATTGCGATAAATTAGATAAACCAAATATGGAATGTGAAAACCCTATATGTCAAGTACGATGGAACGTCAGTAATTGGTCTCAATGCTCACGTTCATGTGGTGGAGTTGGTGTTCAAG]
consensusID : consensus_9022#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 164 fasta sequence
[CGAGACAGAATATGAGATTGAGGAAATCAGTGGTTTTGTAATCGATGTATTTTTGGTTTTTCGACGGGTTGTTGGACCATGGAGTACATGTTCTACAAGTTGTGGCCAAACTGGACAACAATTTCGTGTCGTCAGATGTGAAAAGGTTGATAGTCGATTCTATC]
[-] EMBL CD197527 [CGAGACAGAATATGAGATTGAGGAAATCAGTGGTTTTGTAATCGATGTATTTTTGGTTTTTCGACGGGTTGTTGGACCATGGAGTACATGTTCTACAAGTTGTGGCCAAACTGGACAACAATTTCGTGTCGTCAGATGTGAAAAGGTTGATAGTCGATTCTATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9022#0 ATTTGCATGTAAGCCTGAATTTGTCCCAGAAAAATGGGGTAAGTGTATCCAAAGTGATCC 60
consensus_9022#1 ------------------------------------------------------------
consensus_9022#0 ATGTCGTCCAGGCAGACAAGTACGTCAATTATCGTGCATTTCTGTACAAGTTAATGGATC 120
consensus_9022#1 ------------------------------------------------------------
consensus_9022#0 ACTTCGCGAATTGCCAATGGCAGCCTGCTATATGACTGGGAAAGCAATTCAACCTACATG 180
consensus_9022#1 ------------------------------------------------------------
consensus_9022#0 GCGTCGATGTTTTGAAGAAAGTTCAAGAAAATGTGACAGCAAACCACCAATGATTAATAC 240
consensus_9022#1 ------------------------------------------------------------
consensus_9022#0 TGACACTTTAACTATTGTTCAGATGAGAAAAGTGAAAGTGATTGATTTAAAAGTCGGCCA 300
consensus_9022#1 ------------------------------------------------------------
consensus_9022#0 GCAAGCATTCGTAATACCATTTACCCGTGTAACTGTACGATGTCCTGTACAATATTTTAC 360
consensus_9022#1 ------------------------------------------------------------
consensus_9022#0 AGCACAAGAATTACAATGGGCTAACCCAAACCATGGAATATTAGCCTATACTGGAGCAAT 420
consensus_9022#1 ------------------------------------------------------------
consensus_9022#0 ATCTGATAGAATAAGGGTAGATAAACGAGGAAGGTTACACATACGAAGTTTCCGTCTCAT 480
consensus_9022#1 ------------------------------------------------------------
consensus_9022#0 TGACGAAGGTGACTGGACGTGCATAGCTGGTTCAATGAATGCCACAGTTACATTAACAGC 540
consensus_9022#1 ------------------------------------------------------------
consensus_9022#0 TAGAACTCCAGCAGCAGGGTTTCACGATTGGGTGCAAAGAAACAGATTATG-GACCAAGG 599
consensus_9022#1 -------------------------------------CGAGACAGAATATGAGATTGAGG 23
** ***** **** ** ***
consensus_9022#0 GTATGCTCAGTGATGATCCTAAGGCAATAGCTGTAAATCATGAAATTATTCAATGGGTTG 659
consensus_9022#1 AAA---TCAGTGGTTTT------GTAATCGATGTATTTTT---GGTTTTTCGACGGGTTG 71
* ****** * * * *** * **** * ** *** * ******
consensus_9022#0 TTGGACCATGGAGTACATGTTCTACAAGTTGTGGCCAAACTGGACAACAATTTCGTGTCG 719
consensus_9022#1 TTGGACCATGGAGTACATGTTCTACAAGTTGTGGCCAAACTGGACAACAATTTCGTGTCG 131
************************************************************
consensus_9022#0 TCAGATGTGAAAAAGTTGATAGTCGATTCTATCAAATACTGAATGATCAAGTATGCATTG 779
consensus_9022#1 TCAGATGTGAAAAGGTTGATAGTCGATTCTATC--------------------------- 164
************* *******************
consensus_9022#0 ATAAACTATTGCCAAAACCACCAAGTACACGAAAGTGTTTAGAAAGTAACAAATGTCCAG 839
consensus_9022#1 ------------------------------------------------------------
consensus_9022#0 CATGGTTCGTTGAAAACCGTGACACATCTGTTTGTACAGATCGGTGTTTAGATGTTGGTA 899
consensus_9022#1 ------------------------------------------------------------
consensus_9022#0 AAGGTTCAATTAGTGGAAATTTAGTCTGTATGATTGGTGAGAGAACCGTCGCCACAAAAT 959
consensus_9022#1 ------------------------------------------------------------
consensus_9022#0 ATTGCGATAAATTAGATAAACCAAATATGGAATGTGAAAACCCTATATGTCAAGTACGAT 1019
consensus_9022#1 ------------------------------------------------------------
consensus_9022#0 GGAACGTCAGTAATTGGTCTCAATGCTCACGTTCATGTGGTGGAGTTGGTGTTCAAG 1076
consensus_9022#1 ---------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||