cluster # 9024

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Schistosoma mansoni
cluster # 9024 cluster # 9024 Sequences # 8 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9024#0 length = 1193 sequences # 6

consensus_9024#1 length = 140 sequences # 1
consensus_9024#2 length = 115 sequences # 1

consensusID : consensus_9024#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1193
fasta sequence

                              [GAGGGGGCTTTAGCCTCTGCGCCGNTGATATTCCCGATCTCGTTTACTTCGTAAACGTTCAATTTCGGCTTCTAATTCAATAGGACCTACTCCTCGACGAGCTAAGTCTTCACGAGCAGTTGCCAACTCACGTTTCAGTATACTGATTTGAGCTGTAAGACTTGATTGGTAACATCGGCGGCTTCGAGTTTTGAAGCCTTTTTCGATATTTCCTCATGAATACGGAGGATTACGTTTTCCCGATAAGTCAGAAGTTGATTAAGCTCGTTGACTTGGCTCTCTAGTTCCATCACCTTAGCACGCAGAGTGGCAGGATCAGTCTTCGAAAGTCGTTCTAAATCGTTTTCCAGCTTTTTGTCATCAGCGATCCATGGAGGCAAAGTGGGTCCAATCAGACGACCACCAAGCATACCACCACCATATCTTCTTTCAGAATGTGCCATTTCCTTGATACGTGCTTCCAGAGTTGCGCATTTCTCACCCAGCATCTCATATTCATCTAGTTGGTGTTCCAACTGCATTTGCAGCTGCTTTTTATCACAGCATAATTCTTCAATCTTGTGCTCCAATCCGCTTTTAACTTCTTTAAGTTCCGCAATACGATTTTCGGATTTAGCCTGTTCGGATTTGAAATACTCGTTAGCAGCAGCTAATCCACTCTCACTAGTTGTTTCAGAACGATCATTGACCAAATTATCAAAAAGTTCCTGTAGCGCCTTCAATCGTTCTTTTAAGTCATCAGCATCTTCACCTCTAACAATAGCTATATTTAATTCCGTCTCTAGATTAGAGGTTTTATGTAACAAATTATCTCGTTCCTCCGTGATATTTCTCAAGCGTTCTTCAATTTCCTTCGTGAAATTACTTTGTTTTACAATAATGCTATCCTTGATCTTTATTAAACCGGATGCTTCATCTGCACGCCTTTCAGCATCAGGCGTTCACATTGTCCTTGTGAATCGGCTAATTCCTGCTTTGTGGCATCGAACGCCTTAAGACGCCCTTCTAAGTCAGCAATCTGCAAACGGCAATCCATAACCTTTTTTTTCTCATCCCTATTCTGATTCCAGCTCTTTTATAGTATTTTCCAGCTGACCACGTGTATTTGAAAGTTGAGTTGTGAGCTCGGAACAAAGGCGTTCTTTTGTTTTGAACTCGGCAGACATTTTATCAACCTGTGCAGATTTAGCATC]

[+] EMBL CD094686             [GAGGGGGCTTTAGCCTCTGCGCCGNTGATATTCCCGATCTCGTTTACTTCGTAAACGTTCAATTTCGGCTTCTAATTCAATAGGACCTACTCCTCGACGAGCTAAGTCTTCACGAGCAGTTGCCAACTCACGTTTCAGTATACTGATTTGAGCTGTAAGACTTGATTGGTAACATCGGCGGCTTCGAGTTTTGAAGCCTTTTTCGATATTTCCTCATGAATACGGAGGATTACGTTTTCCCGATAAGTCAGAAGTTGATTAAGCTCGTTGACTTGGCTCTCTAGTTCCATCACCTTAGCACGCAGAGTGGCAGGATCAGTCTTCGAAAGTCGTTCTAAATCGTTTTCCAGCTTTTTGTCATCAGCGATCCATGGAGGCAAAGTGGGTCCAATCAGACGACCACCAAGCATACCACCACCATATCTTCTTTCAGAATGTGCCATTTCCTTGATACGTGCTTCCAGAGTTGCGCATTTCTCACCCAGCTTCTCATATTCATCTAGTTGGTGTTCCAACTGCATTTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CD118590             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GTTGCGCATTTCTCACGCAGTATGTCATATTCATATAGTTGATGTTCCAACTGCATTTGCAGCTGCTTTTTATCACAGCATAATTCTTCAATCTTGTGCTCCAATCCGCTTATAGCTTCTTTAAGTTCCGCAATACGGTTTTCGGATTTAGCCTGTTCGGATTTGAAATACTCGTTAGCAGCAGATAATCCACTCTCACTAGTTGTTTCAGATCGATCATTGTCCAAATTATCAAAAAGTTCCTGTAGCGCCTTCAATCGTTCTTTTAAGTCATCAGCATCTTCACCTATAACAATAGCTATATTTAATTCCGTCTCTAGATTAGAGGTTTTATGTAACAAATTATCTCGTTCCTCCGTGATATTTGTCAAGCGTTCTTCAATTTCCTTCGTGAAATTACTTTGTTATACAATAATGCTATCCTTGATGTTCATTAAACCGGA                                                                                                                                                                                                                                                                                             ]
[-] EMBL CD118550             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GTTGCGCATTTCTCACCCAGCCTCTCATATTCATCTAGTTGTTGTTCCAACTGCATTTGCAGTTGCTTTTTATCACAACATAATTCTTCAATCTTCTGCTCCAATCCGCTTTTAACTTCTTTAAGTTCCGCAATACGATTTTCGGATTTAGCCTGTTCGGATTTGAAATACTCGTTAGCAGCAGCTAATCCACTCTCACTAGTTGTTACAGAACGATCATTGACCAAATTATCAAAAAGTTCCTGTAGCGCCTTCAATCGTTCTTTTAAGTCATCAGCATCTTCACCTCTAACAATAGCTATATTTAATTCCGTCTCTAGATTAGAGGTTTTATGTAACAAATTATCTCGTTCCTCCGTGATATTTCTCAAGCGTTCTTCAATTTCCTTCGTGAAATTACTTTGTTTTACAATAATGCTATCCTTGATCTTTATTAAACCGGA                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD146523             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TCCAATCCGCTTTTAACTTCTTTAAGTTCCGCAATACGATTTTCGGATTTAGCCTGTTCGGATTTGAAATACTCGTTAGCAGCAGCTAATCCACTCTCACTAGTTGTTTCAGAACGATCATTGACCAAATTATCAAAAAGTTCCTGTAGCGCCTTCAATCGTTCTTTTAAGTCATCAGCATCTTCACCTCTAACAATAGCTATATTTAATTCCGTCTCTAGATTAGAGGTTTTATGTAACAAATTATCTCGTTCCTCCGTGATATTTCTCAAGCGTTCTTCAATTTCCTTCGTGAAATTACTTTGTTTTACAATAATGCTATCCTTGATCTTTATTAAACCGGATGCTTCATCTGCACGCCTTTCAGCATCAG                                                                                                                                                                                                                                                                ]
[+] EMBL CD146530             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TCCAATCCGCTTTTAACTTCTTTAAGTTCCGCAATACGATTTTCGGATTTAGCCTGTTCGGATTTGAAATACTCGTTAGCAGCAGCTAATCCACTCTCACTAGTTGTTTCAGAACGATCATTGACCAAATTATCAAAAAGTTCCTGTAGCGCCTTCAATCGTTCTTTTAAGTCATCAGCATCTTCACCTCTAACAATAGCTATATTTAATTCCGTCTCTAGATTAGAGGTTTTATGTAACAAATTATCTCGTTCCTCCGTGATATTTCTCAAGCGTTCTTCAATTTCCTTCGTGAAATTACTTTGTTTTACAATAATGCTATCCTTGATCTTTATTAAACCGGATGCTTCATCTGCACGCCTTTCAGCATCAG                                                                                                                                                                                                                                                                ]
[+] EMBL CD094838             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TCAAGCGTTCTTCAATTTCCTTCGTGAAATTACTTTGTTTTACAATAATGCTATCCTTGATCTTTATTAAACCGGATGCTTCATCTGCACGCCTTTCAGCATCAGGCGTTCACATTGTCCTTGTGAATCGGCTAATTCCTGCTTTGTGGCATCGAACGCCTTAAGACGCCCTTCTAAGTCAGCAATCTGCAAACGGCAATCCATAACCTTTTTTTTCTCATCCCTATTCTGATTCCAGCTCTTTTATAGTATTTTCCAGCTGACCACGTGTATTTGAAAGTTGAGTTGTGAGCTCGGAACAAAGGCGTTCTTTTGTTTTGAACTCGGCAGACATTTTATCAACCTGTGCAGATTTAGCATC]




>consensus_9024#0
GAGGGGGCTTTAGCCTCTGCGCCGNTGATATTCCCGATCTCGTTTACTTCGTAAACGTTC
AATTTCGGCTTCTAATTCAATAGGACCTACTCCTCGACGAGCTAAGTCTTCACGAGCAGT
TGCCAACTCACGTTTCAGTATACTGATTTGAGCTGTAAGACTTGATTGGTAACATCGGCG
GCTTCGAGTTTTGAAGCCTTTTTCGATATTTCCTCATGAATACGGAGGATTACGTTTTCC
CGATAAGTCAGAAGTTGATTAAGCTCGTTGACTTGGCTCTCTAGTTCCATCACCTTAGCA
CGCAGAGTGGCAGGATCAGTCTTCGAAAGTCGTTCTAAATCGTTTTCCAGCTTTTTGTCA
TCAGCGATCCATGGAGGCAAAGTGGGTCCAATCAGACGACCACCAAGCATACCACCACCA
TATCTTCTTTCAGAATGTGCCATTTCCTTGATACGTGCTTCCAGAGTTGCGCATTTCTCA
CCCAGCATCTCATATTCATCTAGTTGGTGTTCCAACTGCATTTGCAGCTGCTTTTTATCA
CAGCATAATTCTTCAATCTTGTGCTCCAATCCGCTTTTAACTTCTTTAAGTTCCGCAATA
CGATTTTCGGATTTAGCCTGTTCGGATTTGAAATACTCGTTAGCAGCAGCTAATCCACTC
TCACTAGTTGTTTCAGAACGATCATTGACCAAATTATCAAAAAGTTCCTGTAGCGCCTTC
AATCGTTCTTTTAAGTCATCAGCATCTTCACCTCTAACAATAGCTATATTTAATTCCGTC
TCTAGATTAGAGGTTTTATGTAACAAATTATCTCGTTCCTCCGTGATATTTCTCAAGCGT
TCTTCAATTTCCTTCGTGAAATTACTTTGTTTTACAATAATGCTATCCTTGATCTTTATT
AAACCGGATGCTTCATCTGCACGCCTTTCAGCATCAGGCGTTCACATTGTCCTTGTGAAT
CGGCTAATTCCTGCTTTGTGGCATCGAACGCCTTAAGACGCCCTTCTAAGTCAGCAATCT
GCAAACGGCAATCCATAACCTTTTTTTTCTCATCCCTATTCTGATTCCAGCTCTTTTATA
GTATTTTCCAGCTGACCACGTGTATTTGAAAGTTGAGTTGTGAGCTCGGAACAAAGGCGT
TCTTTTGTTTTGAACTCGGCAGACATTTTATCAACCTGTGCAGATTTAGCATC

consensusID : consensus_9024#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 140
fasta sequence

                              [ACTCATCTCATCAATGTGGCATTCCGATTCCTCTTGAAAGCGAATTTCATAGATTTAAAGAACAATTTTAGCTGATGTTAGAAACAATAAGGCGAACGACTGCCAAAATCAACTGTATAACCATATACCTGTCAAATTCA]

[+] EMBL CD059474             [ACTCATCTCATCAATGTGGCATTCCGATTCCTCTTGAAAGCGAATTTCATAGATTTAAAGAACAATTTTAGCTGATGTTAGAAACAATAAGGCGAACGACTGCCAAAATCAACTGTATAACCATATACCTGTCAAATTCA]




>consensus_9024#1
ACTCATCTCATCAATGTGGCATTCCGATTCCTCTTGAAAGCGAATTTCATAGATTTAAAG
AACAATTTTAGCTGATGTTAGAAACAATAAGGCGAACGACTGCCAAAATCAACTGTATAA
CCATATACCTGTCAAATTCA

consensusID : consensus_9024#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 115
fasta sequence

                              [GCTCCAGTCGAATTGGACTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAACGATTGGTTGAGCGTGTCGGTGAGATGGAGGCAAGTTGAAGCGGACGCAGAAAGT]

[+] EMBL CD059472             [GCTCCAGTCGAATTGGACTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAACGATTGGTTGAGCGTGTCGGTGAGATGGAGGCAAGTTGAAGCGGACGCAGAAAGT]




>consensus_9024#2
GCTCCAGTCGAATTGGACTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAA
CGATTGGTTGAGCGTGTCGGTGAGATGGAGGCAAGTTGAAGCGGACGCAGAAAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9024#0      GAGGGGGCTTTAGCCTCTGCGCCGNTGATATTCCCGATCTCGTTTACTTCGTAAACGTTC 60
consensus_9024#1      ------------------------------------------------------------
consensus_9024#2      ------------------------------------------------------------
                                                                                  

consensus_9024#0      AATTTCGGCTTCTAATTCAATAGGACCTACTCCTCGACGAGCTAAGTCTTCACGAGCAGT 120
consensus_9024#1      ------------------------------------------------------------
consensus_9024#2      ------------------------------------------------------------
                                                                                  

consensus_9024#0      TGCCAACTCACGTTTCAGTATACTGATTTGAGCTGTAAGACTTGATTGGTAACATCGGCG 180
consensus_9024#1      ------------------------------------------------------------
consensus_9024#2      ------------------------------------------------------------
                                                                                  

consensus_9024#0      GCTTCGAGTTTTGAAGCCTTTTTCGATATTTCCTCATGAATACGGAGGATTACGTTTTCC 240
consensus_9024#1      ------------------------------------------------------------
consensus_9024#2      ------------------------------------------------------------
                                                                                  

consensus_9024#0      CGATAAGTCAGAAGTTGATTAAGCTCGTTGACTTGGCTCTCTAGTTCCATCACCTTAGCA 300
consensus_9024#1      ------------------------------------------------------------
consensus_9024#2      ------------------------------------------------------------
                                                                                  

consensus_9024#0      CGCAGAGTGGCAGGATCAGTCTTCGAAAGTCGTTCTAAATCGTTTTCCAGCTTTTTGTCA 360
consensus_9024#1      ------------------------------------------------------------
consensus_9024#2      ------------------------------------------------------------
                                                                                  

consensus_9024#0      TCAGCGATCCATGGAGGCAAAGTGGGTCCAATCAGACGACCACCAAGCATACCACCACCA 420
consensus_9024#1      ------------------------------------------------------------
consensus_9024#2      ------------------------------------------------------------
                                                                                  

consensus_9024#0      TATCTTCTTTCAGAATGTGCCATTTCCTTGATACGTGCTTCCAGAGTTGCGCATTTCTCA 480
consensus_9024#1      ------------------------------------------------------------
consensus_9024#2      ------------------------------------------------------------
                                                                                  

consensus_9024#0      CCCAGCATCTCATATTCATCTAGTTGGTGTTCCAACTGCATTTGCAGCTGCTTTTTATCA 540
consensus_9024#1      ------------------------------------------------------------
consensus_9024#2      ------------------------------------------------------------
                                                                                  

consensus_9024#0      CAGCATAATTCTTCAATCTTGTGCTCCAATCCGCTTTTAACTTCTTTAAGTTCCGCAATA 600
consensus_9024#1      ------------------------------------------------------------
consensus_9024#2      ------------------------------------------------------------
                                                                                  

consensus_9024#0      CGATTTTCGGATTTAGCCTGTTCGGATTTGAAATACTCGTTAGCAGCAGCTAATCCACTC 660
consensus_9024#1      ------------------------------------------------------------
consensus_9024#2      ------------------------------------------------------------
                                                                                  

consensus_9024#0      TCACTAGTTGTTTCAGAACGATCATTGACCAAATTATCAAAAAGTTCCTGTAGCGCCTTC 720
consensus_9024#1      ------------------------------------------------------------
consensus_9024#2      ------------------------------------------------------------
                                                                                  

consensus_9024#0      AATCGTTCTTTTAAGTCATCAGCATCTTCACCTCTAACAATAGCTATATTTAATTCCGTC 780
consensus_9024#1      ------------------------------------------------------------
consensus_9024#2      ------------------------------------------------------------
                                                                                  

consensus_9024#0      TCTAGATTAGAGGTTTTATGTAACAAATTATCTCGTTCCTCCGTGATATTTCTCAAGCGT 840
consensus_9024#1      ------------------------------------------------------------
consensus_9024#2      ------------------------------------------------------------
                                                                                  

consensus_9024#0      TCTTCAATTTCCTTCGTGAAATTACTTTGTTTTACAATAATGCTATCCTTGATCTTTATT 900
consensus_9024#1      ------------------------------------------------------------
consensus_9024#2      ------------------------------------------------------------
                                                                                  

consensus_9024#0      AAACCGGATGCTTCATCTGCACGCCTTTCAGCATCA-GGCGTTCACATTGTCCTTGTGAA 959
consensus_9024#1      --------------------ACTCATCTCATCAATGTGGCATTCCGATTCCTCTTGAAA- 39
consensus_9024#2      ------------------------GCTCCAGTCGAATTGGACTCTGAGGCGCTTGCAGAG 36
                                                  **        *   **  *      *    * 

consensus_9024#0      TCGGCTAATTCCTGCTTTGTGGCATCGAACGCCTTAAGACGCCCTTCTAAGTCAGCAATC 1019
consensus_9024#1      ---GCGAATTTCA---TAGATTTAAAGAACAATTTTAGCTGATGTTAGAAA-CAATAA-- 90
consensus_9024#2      ACTGC-AGCACAACCGGAACGGGAACGATTGGTTGAGCGTGTCGGTGAGATGGAGGCAAG 95
                         ** *                *  **     *      *    *   *   *   *  

consensus_9024#0      TGCAAACGGCAATCCATAACCTTTTTTTTCTCATCCCTATTCTGATTCCAGCTCTTTTAT 1079
consensus_9024#1      GGCGAACGACTGCCAAAATCAACTGTATAACCATATACCTGTCAAATTCA---------- 140
consensus_9024#2      TTGAAGCGGACGCAGAAAGT---------------------------------------- 115
                          * **       * *                                          

consensus_9024#0      AGTATTTTCCAGCTGACCACGTGTATTTGAAAGTTGAGTTGTGAGCTCGGAACAAAGGCG 1139
consensus_9024#1      ------------------------------------------------------------
consensus_9024#2      ------------------------------------------------------------
                                                                                  

consensus_9024#0      TTCTTTTGTTTTGAACTCGGCAGACATTTTATCAACCTGTGCAGATTTAGCATC 1193
consensus_9024#1      ------------------------------------------------------
consensus_9024#2      ------------------------------------------------------