These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9025#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 808 fasta sequence [GCCGCCGACTCTAGATGATCCCCCATCGGGAATCAATAAAAGAGATTGACTATGAGACTGTTACTACTATGGAACCACAGCACGTTGTAGCTATCAAATCATTATGGGATGATCCGGGTATTAAAGAATGCTATGATCGTCGTCGTGAATATCAACTAACAGATTCAGCAAAATACTATTTAGATAATCTTGACAGAATTTCACAAGCAGATTATTTACCGACGCTCCAAGATATTTTACGAGTTCGAGTTCCTACTACAGGAATTGTAGAGTACTTGTTTGATTTGGATTCTATCATATTTCGAATGGTTGATGTTGGTGGACAACGTTCTGAACGTCGAAAATGGATACATTGTTTTGAAAGTGTCACTTCAATTATGTTTTTAGTTGCATTATCTGAGTATGATCAAGTATTGGTGGAATCCGATAATGAGAATCGTATGGAAGAAAGTAAAGCGCTCTTCAGAACAATCATTACTTATCCATGGTTTCAAGAGTCATCTGTTATTTTATTCCTGAATAAGAAAGATCTTTTAGAAGAGAAAGTTCTCTATTCTCATCTTGTTGATTATTTTCCTGAATATGATGGTCCTCAACGCGATGCAGAAGCTGCTCGTGATTTTATTTTGAAAATGTTTGTTGAATTAAATCCTGATCCTGAGAAAATAATCTATTCTCATTTCACATGCGCTACTGACACAGAGAATATACGTTTTGTTTTTGCTGCTGTAAAAGATACAATACTTCAGTTGAATTTAAAAGAATATAATCTTGTTTGAGGAATTATGTCATAAAGTATGCATCATTT] [+] EMBL CD062646 [GCCGCCGACTCTAGATGATCCCCCATCGGGAATCAATAAAAGAGATTGACTATGAGACTGTTACTACTATGGAACCACAGCACGTTGTAGCTATCAAATCATTGTGGGATGATCCGGGTATTAAAGAATGCTATGATCGTCGTCGTGAATATCAACTAACAGATTCAGCAAAATACTATTTAGATAATCTTGACAGAATTTCACAAGCAGATTATTTACCGACGCTCCAAGATATTTTACGAGTTCGAGTTCCTACTACAGGAATTGTACAGTACTTGTTTGATTTGGATTCTATCATATTTCGAATGGTTGATGTTGGTGGACAACGTTCTGAACGTCGAAAATGGATACATTGTTTTGAAAGTGTCACTTCAATTATGTTTTTAGTTGCATTgggt ] [+] EMBL CD169811 [ AAAAGAGATTGACTATGAGACTGTTACTACTATGGAACCACAGCACGTTGTAGCTATCAAATCATTATGGGATGATCCGGGTATTAAAGAATGCTATGATCGTCGTCGTGAATATCAACTAACAGATTCAGCAAAATACTATTTAGATGATCTTGACAGAATTTCACAAGCAGATTATTTACCGACGCTCCAAGATATTTTACGAGTTCGAGTTCCTACTACAGGAATTGTAGAGTACTTGTTTGATTTGGATTCTATCATATTTCGAATGGTTGATGTTGGTGGACAACGTTCTGAACGTCGAAAATGGATACATTGTTTTGAAAGTGTCACTTCAATTATGTTTTTAGTTGCATTATCTGAGTATGATCAAGTATTGGTGGAATCCGATAATGAGAATCGTATGGAAGAAAGTAAAGCGCTCTTCAGAACAATCATTA ] [+] EMBL CD169754 [ AAAAGAGATTGACTATGAGACTGTTACTACTATGGAACCACAGCACGTTGTAGCTATCAAATCATTATGGGATGATCCGGGTATTAAAGAATGCTATGATCGTCGTCGTGAATATCAACTAACAGATTCAGCAAAATACTATTTAGATAATCTTGACAGAATTTCACAAGCAGATTATTTACCGACGCTCCAAGATATTTTACGAGTTCGAGTTCCTACTACAGGAATTGTAGAGTACTTGTTTGATTTGGATTCTATCATATTTCGAATGGTTGATGTTGGTGGACAACGTTCTGAACGTCGAAAATGGATACATTGTTTTGAAAGTGTCACTTCAATTATGTTTTTAGTTGCATTATCTGAGTATGATCAAGTATTGGTGGAATCCGATAATGAGAATCGTATGGAAGAAAGTAAAGCGCTCTTCAGAACAAT ] [+] EMBL CD178311 [ AATGCTATGATCGTCGTCGTGAATATCAACTAACAGATTCAGCAAAATACTATTTAGATAATCTTGACAGAATTTCACAAGCAGATTATTTACCGACGCTCCAAGATATTTTACGAGTTCGAGTTCCTACTACAGGAATTGTAGAGTACTTGTTTGATTTGGATTCTATCATATTTCGAATGGTTGATGTTGGTGGACAACGTTCTGAACGTCGAAAATGGATACATTGTTTTGAAAGTGTCACTTCAATTATGTTTTTAGTTGCATTATCTGAGTATGATCAAGTATTGGTGGAATCCGATAATGAGAATCGTATGGAAGAAAGTAAAGCGCTCTTCAGAACAATCATTACTTATCCATGGTTTCAAGAGTCATCTGTTATTTTATTCCTGAATAAGAAAGATCTTTTAGAAGAGAAAGTTCTCTATTCTCATCTTGTTGATTATTTTCCTGGATATGATGGTCCTCAACGCGATGCAGAAGCTGCTCGTAATTT ] [-] EMBL CD179092 [ GAGAATCGTATGGAAGAAAGTAAAGCGCTCTTCAGAACAATCATTACTTATCCATGGTTTCAAGAGTCATCTGTTATTTTATTCCTGAATAAGAAAGATCTTTTAGAAGAGAAAGTTCTCTATTCTCATCTTGTTGATTATTTTCCTGAATATGATGGTCCTCAACGCGATGCAGAAGCTGCTCGTGATTTTATTTTGAAAATGTTTGTTGAATTAAATCCTGATCCTGAGAAAATAATCTATTCTCATTTCACATGCGCTACTGACACAGAGAATATACGTTTTGTTTTTGCTGCTGTAAAAGATACAATACTTCAGTTGAATTTAAAAGAATATAATCTTGTTTGAGGAATTATGTCATAAAGTATGCATCATTT] [+] EMBL CD178843 [ GCTCTTCAGAACAATCATTACTTATCCATGGTTTCAAGAGTCATCTGTTATTTTATTCCTGAATAAGAAAGATCTTTCAGAAGAGAAAGTTCTCTATTCTCATCTTGTTGATTATTTTCCTGAATATGATGGTCCTCAACGCGATGCAGAAGCTGCTCGTGATTTTATTTTGAAAATGTTTGTTGAATTAAATCCTGATCCTGAGAAAATAATCTATTCTCATTTCACATGTGCTACTGACACAGAGAATATACGTTTTGTTTTTGCTGCTGTAAAAGATACAATACTTCAGTTGAATTTAAAAGAATATAATCTTGTTTGAGGAATTATGTCATAAAGTATGCATCATT ] consensusID : consensus_9025#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 437 fasta sequence [TTTGTGTCTTCCAAACAAATTCTTGCTTAAATACGTTCAGATGAGATATTAGAATGATTTCCGCATAATTTTGTATTGTATTTTATAGAATCGTATGGAAGAAAGTAAAGCGCTCTTCAGAACAATCATTACTTATCCATGGTTTCAAGAGTCATCTGTTATTTTATTCCTGAATAAGAAAGATCTTTTAGAAGAGAAAGTTCTCTATTCTCATCTTGTTGATTATTTTCCTGAATATGATGGTAAGTGTTATGTTTTCCTTGTTTAAAATGAAAGATTAATTACATTCTGTTTGGTATTTATCCATTTTTAACATAAATTGTCAATCCAAACTTGAAGTAACTATCTTCAATGTACAAATAGGATGCTGATTGTTGACGTGTTCATTGTATGAAATTATTTCTGGGAAAAAAAAGGTTATTAAATAAAACGGTGGG] [+] EMBL CD089396 [TTTGTGTCTTCCAAACAAATTCTTGCTTAAATACGTTCAGATGAGATATTAGAATGATTTCCGCATAATTTTGTATTGTATTTTATAGAATCGTATGGAAGAAAGTAAAGCGCTCTTCAGAACAATCATTACTTATCCATGGTTTCAAGAGTCATCTGTTATTTTATTCCTGAATAAGAAAGATCTTTTAGAAGAGAAAGTTCTCTATTCTCATCTTGTTGATTATTTTCCTGAATATGATGGTAAGTGTTATGTTTTCCTTGTTTAAAATGAAAGATTAATTACATTCTGTTTGGTATTTATCCATTTTTAACATAAATTGTCAATCCAAACTTGAAGTAACTATCTTCAATGTACAAATAGGATGCTGATTGTTGACGTGTTCATTGTATGAAATTATTTCTGGGAAAAAAAAGGTTATTAAATAAAACGGTGGG] [+] EMBL CD089394 [TTTGTGTCTTCCAAACAAATTCTTGCTTAAATACGTTCAGATGAGATATTAGAATGATTTCCGCATAATTTTGTATTGTATTTTATAGAATCGTATGGAAGAAAGTAAAGCGCTCTTCAGAACAATCATTACTTATCCATGGTTTCAAGAGTCATCTGTTATTTTATTCCTGAATAAGAAAGATCTTTTAGAAGAGAAAGTTCTCTATTCTCATCTTGTTGATTATTTTCCTGAATATGATGGTAAGTGTTATGTTTTCCTTGTTTAAAATGAAAGATTAATTACATTCTGTTTGGTATTTATCCATTTTTAACATAAATTGT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9025#0 GCCGCCGACTCTAGATGATCCCCCATCGGGAATCAATAAAAGAGATTGACTATGAGACTG 60 consensus_9025#1 ------------------------------------------------------------ consensus_9025#0 TTACTACTATGGAACCACAGCACGTTGTAGCTATCAAATCATTATGGGATGATCCGGGTA 120 consensus_9025#1 ------------------------------------------------------------ consensus_9025#0 TTAAAGAATGCTATGATCGTCGTCGTGAATATCAACTAACAGATTCAGCAAAATACTATT 180 consensus_9025#1 ------------------------------------------------------------ consensus_9025#0 TAGATAATCTTGACAGAATTTCACAAGCAGATTATTTACCGACGCTCCAAGATATTTTAC 240 consensus_9025#1 ------------------------------------------------------------ consensus_9025#0 GAGTTCGAGTTCCTACTACAGGAATTGTAGAGTACTTGTTTGATTTGGATTCTATCATAT 300 consensus_9025#1 ------------------------------------------------------------ consensus_9025#0 TTCGAATGGTTGATGTTGGTGGACAACGTTCTGAACGTCGAAAATGGATACATTGTTTTG 360 consensus_9025#1 -----------------------------TTTGTGTCTTCCAAACAAATTC-TTGCTT-- 28 * ** * *** ** * *** ** consensus_9025#0 AAAGTGTCACTTCAATTATGTTTTTAGTTGCATTATCTGAGTATGATCAAGTATTGGTGG 420 consensus_9025#1 -AAATACG--TTCAGATGAGATATTAGA---ATGATTTCCGCATAATTTTGTATTGT--- 79 ** * **** * * * **** ** ** * * ** ** ****** consensus_9025#0 AATCCGATAATGAGAATCGTATGGAAGAAAGTAAAGCGCTCTTCAGAACAATCATTACTT 480 consensus_9025#1 -ATTTTATA----GAATCGTATGGAAGAAAGTAAAGCGCTCTTCAGAACAATCATTACTT 134 ** *** *********************************************** consensus_9025#0 ATCCATGGTTTCAAGAGTCATCTGTTATTTTATTCCTGAATAAGAAAGATCTTTTAGAAG 540 consensus_9025#1 ATCCATGGTTTCAAGAGTCATCTGTTATTTTATTCCTGAATAAGAAAGATCTTTTAGAAG 194 ************************************************************ consensus_9025#0 AGAAAGTTCTCTATTCTCATCTTGTTGATTATTTTCCTGAATATGATGGTCCTCAACGCG 600 consensus_9025#1 AGAAAGTTCTCTATTCTCATCTTGTTGATTATTTTCCTGAATATGATGG---TAAGTGTT 251 ************************************************* * * * consensus_9025#0 ATGCAGAAGCTGCTCGTGATTTTATTTTGAAAATGTTTGTTGAATTAAATCCTGATCCTG 660 consensus_9025#1 ATGTT--------------TTCCTTGTTTAAAATGAAAGATTAATTACATTCTGTTT--- 294 *** ** * ** ****** * * ***** ** *** * consensus_9025#0 AGAAAATAATCTATTCTCATTTCACATGCGCTACTGACACAGAGAATATACGTTTTGTTT 720 consensus_9025#1 -GGTATTTATCCATTTTTAACATAAATTGTCAATCCAAACTTGAAGTAACTATCTTCAAT 353 * * * *** *** * * * ** * * * ** * ** * ** * consensus_9025#0 TTGCTGCTGTAAAAGATACAATACTTCAGTTGAATTTAAAAGAATATAATCTTGTTTGAG 780 consensus_9025#1 GTACAAATAGGATGCTGATTGTTGACGTGTTCATTGTATGAAATTAT----TTCTGGGAA 409 * * * * * * *** * * ** * * *** ** * ** consensus_9025#0 GAATTATGTCATAAAGTATGCATCATTT- 808 consensus_9025#1 AAAAAAGGTTATTAAATA-AAACGGTGGG 437 ** * ** ** ** ** * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||