cluster # 9025

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Schistosoma mansoni
cluster # 9025 cluster # 9025 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9025#0 length = 808 sequences # 6

consensus_9025#1 length = 437 sequences # 2

consensusID : consensus_9025#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 808
fasta sequence

                              [GCCGCCGACTCTAGATGATCCCCCATCGGGAATCAATAAAAGAGATTGACTATGAGACTGTTACTACTATGGAACCACAGCACGTTGTAGCTATCAAATCATTATGGGATGATCCGGGTATTAAAGAATGCTATGATCGTCGTCGTGAATATCAACTAACAGATTCAGCAAAATACTATTTAGATAATCTTGACAGAATTTCACAAGCAGATTATTTACCGACGCTCCAAGATATTTTACGAGTTCGAGTTCCTACTACAGGAATTGTAGAGTACTTGTTTGATTTGGATTCTATCATATTTCGAATGGTTGATGTTGGTGGACAACGTTCTGAACGTCGAAAATGGATACATTGTTTTGAAAGTGTCACTTCAATTATGTTTTTAGTTGCATTATCTGAGTATGATCAAGTATTGGTGGAATCCGATAATGAGAATCGTATGGAAGAAAGTAAAGCGCTCTTCAGAACAATCATTACTTATCCATGGTTTCAAGAGTCATCTGTTATTTTATTCCTGAATAAGAAAGATCTTTTAGAAGAGAAAGTTCTCTATTCTCATCTTGTTGATTATTTTCCTGAATATGATGGTCCTCAACGCGATGCAGAAGCTGCTCGTGATTTTATTTTGAAAATGTTTGTTGAATTAAATCCTGATCCTGAGAAAATAATCTATTCTCATTTCACATGCGCTACTGACACAGAGAATATACGTTTTGTTTTTGCTGCTGTAAAAGATACAATACTTCAGTTGAATTTAAAAGAATATAATCTTGTTTGAGGAATTATGTCATAAAGTATGCATCATTT]

[+] EMBL CD062646             [GCCGCCGACTCTAGATGATCCCCCATCGGGAATCAATAAAAGAGATTGACTATGAGACTGTTACTACTATGGAACCACAGCACGTTGTAGCTATCAAATCATTGTGGGATGATCCGGGTATTAAAGAATGCTATGATCGTCGTCGTGAATATCAACTAACAGATTCAGCAAAATACTATTTAGATAATCTTGACAGAATTTCACAAGCAGATTATTTACCGACGCTCCAAGATATTTTACGAGTTCGAGTTCCTACTACAGGAATTGTACAGTACTTGTTTGATTTGGATTCTATCATATTTCGAATGGTTGATGTTGGTGGACAACGTTCTGAACGTCGAAAATGGATACATTGTTTTGAAAGTGTCACTTCAATTATGTTTTTAGTTGCATTgggt                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD169811             [                                     AAAAGAGATTGACTATGAGACTGTTACTACTATGGAACCACAGCACGTTGTAGCTATCAAATCATTATGGGATGATCCGGGTATTAAAGAATGCTATGATCGTCGTCGTGAATATCAACTAACAGATTCAGCAAAATACTATTTAGATGATCTTGACAGAATTTCACAAGCAGATTATTTACCGACGCTCCAAGATATTTTACGAGTTCGAGTTCCTACTACAGGAATTGTAGAGTACTTGTTTGATTTGGATTCTATCATATTTCGAATGGTTGATGTTGGTGGACAACGTTCTGAACGTCGAAAATGGATACATTGTTTTGAAAGTGTCACTTCAATTATGTTTTTAGTTGCATTATCTGAGTATGATCAAGTATTGGTGGAATCCGATAATGAGAATCGTATGGAAGAAAGTAAAGCGCTCTTCAGAACAATCATTA                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD169754             [                                     AAAAGAGATTGACTATGAGACTGTTACTACTATGGAACCACAGCACGTTGTAGCTATCAAATCATTATGGGATGATCCGGGTATTAAAGAATGCTATGATCGTCGTCGTGAATATCAACTAACAGATTCAGCAAAATACTATTTAGATAATCTTGACAGAATTTCACAAGCAGATTATTTACCGACGCTCCAAGATATTTTACGAGTTCGAGTTCCTACTACAGGAATTGTAGAGTACTTGTTTGATTTGGATTCTATCATATTTCGAATGGTTGATGTTGGTGGACAACGTTCTGAACGTCGAAAATGGATACATTGTTTTGAAAGTGTCACTTCAATTATGTTTTTAGTTGCATTATCTGAGTATGATCAAGTATTGGTGGAATCCGATAATGAGAATCGTATGGAAGAAAGTAAAGCGCTCTTCAGAACAAT                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD178311             [                                                                                                                              AATGCTATGATCGTCGTCGTGAATATCAACTAACAGATTCAGCAAAATACTATTTAGATAATCTTGACAGAATTTCACAAGCAGATTATTTACCGACGCTCCAAGATATTTTACGAGTTCGAGTTCCTACTACAGGAATTGTAGAGTACTTGTTTGATTTGGATTCTATCATATTTCGAATGGTTGATGTTGGTGGACAACGTTCTGAACGTCGAAAATGGATACATTGTTTTGAAAGTGTCACTTCAATTATGTTTTTAGTTGCATTATCTGAGTATGATCAAGTATTGGTGGAATCCGATAATGAGAATCGTATGGAAGAAAGTAAAGCGCTCTTCAGAACAATCATTACTTATCCATGGTTTCAAGAGTCATCTGTTATTTTATTCCTGAATAAGAAAGATCTTTTAGAAGAGAAAGTTCTCTATTCTCATCTTGTTGATTATTTTCCTGGATATGATGGTCCTCAACGCGATGCAGAAGCTGCTCGTAATTT                                                                                                                                                                                          ]
[-] EMBL CD179092             [                                                                                                                                                                                                                                                                                                                                                                                                                                               GAGAATCGTATGGAAGAAAGTAAAGCGCTCTTCAGAACAATCATTACTTATCCATGGTTTCAAGAGTCATCTGTTATTTTATTCCTGAATAAGAAAGATCTTTTAGAAGAGAAAGTTCTCTATTCTCATCTTGTTGATTATTTTCCTGAATATGATGGTCCTCAACGCGATGCAGAAGCTGCTCGTGATTTTATTTTGAAAATGTTTGTTGAATTAAATCCTGATCCTGAGAAAATAATCTATTCTCATTTCACATGCGCTACTGACACAGAGAATATACGTTTTGTTTTTGCTGCTGTAAAAGATACAATACTTCAGTTGAATTTAAAAGAATATAATCTTGTTTGAGGAATTATGTCATAAAGTATGCATCATTT]
[+] EMBL CD178843             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GCTCTTCAGAACAATCATTACTTATCCATGGTTTCAAGAGTCATCTGTTATTTTATTCCTGAATAAGAAAGATCTTTCAGAAGAGAAAGTTCTCTATTCTCATCTTGTTGATTATTTTCCTGAATATGATGGTCCTCAACGCGATGCAGAAGCTGCTCGTGATTTTATTTTGAAAATGTTTGTTGAATTAAATCCTGATCCTGAGAAAATAATCTATTCTCATTTCACATGTGCTACTGACACAGAGAATATACGTTTTGTTTTTGCTGCTGTAAAAGATACAATACTTCAGTTGAATTTAAAAGAATATAATCTTGTTTGAGGAATTATGTCATAAAGTATGCATCATT ]




>consensus_9025#0
GCCGCCGACTCTAGATGATCCCCCATCGGGAATCAATAAAAGAGATTGACTATGAGACTG
TTACTACTATGGAACCACAGCACGTTGTAGCTATCAAATCATTATGGGATGATCCGGGTA
TTAAAGAATGCTATGATCGTCGTCGTGAATATCAACTAACAGATTCAGCAAAATACTATT
TAGATAATCTTGACAGAATTTCACAAGCAGATTATTTACCGACGCTCCAAGATATTTTAC
GAGTTCGAGTTCCTACTACAGGAATTGTAGAGTACTTGTTTGATTTGGATTCTATCATAT
TTCGAATGGTTGATGTTGGTGGACAACGTTCTGAACGTCGAAAATGGATACATTGTTTTG
AAAGTGTCACTTCAATTATGTTTTTAGTTGCATTATCTGAGTATGATCAAGTATTGGTGG
AATCCGATAATGAGAATCGTATGGAAGAAAGTAAAGCGCTCTTCAGAACAATCATTACTT
ATCCATGGTTTCAAGAGTCATCTGTTATTTTATTCCTGAATAAGAAAGATCTTTTAGAAG
AGAAAGTTCTCTATTCTCATCTTGTTGATTATTTTCCTGAATATGATGGTCCTCAACGCG
ATGCAGAAGCTGCTCGTGATTTTATTTTGAAAATGTTTGTTGAATTAAATCCTGATCCTG
AGAAAATAATCTATTCTCATTTCACATGCGCTACTGACACAGAGAATATACGTTTTGTTT
TTGCTGCTGTAAAAGATACAATACTTCAGTTGAATTTAAAAGAATATAATCTTGTTTGAG
GAATTATGTCATAAAGTATGCATCATTT

consensusID : consensus_9025#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 437
fasta sequence

                              [TTTGTGTCTTCCAAACAAATTCTTGCTTAAATACGTTCAGATGAGATATTAGAATGATTTCCGCATAATTTTGTATTGTATTTTATAGAATCGTATGGAAGAAAGTAAAGCGCTCTTCAGAACAATCATTACTTATCCATGGTTTCAAGAGTCATCTGTTATTTTATTCCTGAATAAGAAAGATCTTTTAGAAGAGAAAGTTCTCTATTCTCATCTTGTTGATTATTTTCCTGAATATGATGGTAAGTGTTATGTTTTCCTTGTTTAAAATGAAAGATTAATTACATTCTGTTTGGTATTTATCCATTTTTAACATAAATTGTCAATCCAAACTTGAAGTAACTATCTTCAATGTACAAATAGGATGCTGATTGTTGACGTGTTCATTGTATGAAATTATTTCTGGGAAAAAAAAGGTTATTAAATAAAACGGTGGG]

[+] EMBL CD089396             [TTTGTGTCTTCCAAACAAATTCTTGCTTAAATACGTTCAGATGAGATATTAGAATGATTTCCGCATAATTTTGTATTGTATTTTATAGAATCGTATGGAAGAAAGTAAAGCGCTCTTCAGAACAATCATTACTTATCCATGGTTTCAAGAGTCATCTGTTATTTTATTCCTGAATAAGAAAGATCTTTTAGAAGAGAAAGTTCTCTATTCTCATCTTGTTGATTATTTTCCTGAATATGATGGTAAGTGTTATGTTTTCCTTGTTTAAAATGAAAGATTAATTACATTCTGTTTGGTATTTATCCATTTTTAACATAAATTGTCAATCCAAACTTGAAGTAACTATCTTCAATGTACAAATAGGATGCTGATTGTTGACGTGTTCATTGTATGAAATTATTTCTGGGAAAAAAAAGGTTATTAAATAAAACGGTGGG]
[+] EMBL CD089394             [TTTGTGTCTTCCAAACAAATTCTTGCTTAAATACGTTCAGATGAGATATTAGAATGATTTCCGCATAATTTTGTATTGTATTTTATAGAATCGTATGGAAGAAAGTAAAGCGCTCTTCAGAACAATCATTACTTATCCATGGTTTCAAGAGTCATCTGTTATTTTATTCCTGAATAAGAAAGATCTTTTAGAAGAGAAAGTTCTCTATTCTCATCTTGTTGATTATTTTCCTGAATATGATGGTAAGTGTTATGTTTTCCTTGTTTAAAATGAAAGATTAATTACATTCTGTTTGGTATTTATCCATTTTTAACATAAATTGT                                                                                                                  ]




>consensus_9025#1
TTTGTGTCTTCCAAACAAATTCTTGCTTAAATACGTTCAGATGAGATATTAGAATGATTT
CCGCATAATTTTGTATTGTATTTTATAGAATCGTATGGAAGAAAGTAAAGCGCTCTTCAG
AACAATCATTACTTATCCATGGTTTCAAGAGTCATCTGTTATTTTATTCCTGAATAAGAA
AGATCTTTTAGAAGAGAAAGTTCTCTATTCTCATCTTGTTGATTATTTTCCTGAATATGA
TGGTAAGTGTTATGTTTTCCTTGTTTAAAATGAAAGATTAATTACATTCTGTTTGGTATT
TATCCATTTTTAACATAAATTGTCAATCCAAACTTGAAGTAACTATCTTCAATGTACAAA
TAGGATGCTGATTGTTGACGTGTTCATTGTATGAAATTATTTCTGGGAAAAAAAAGGTTA
TTAAATAAAACGGTGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9025#0      GCCGCCGACTCTAGATGATCCCCCATCGGGAATCAATAAAAGAGATTGACTATGAGACTG 60
consensus_9025#1      ------------------------------------------------------------
                                                                                  

consensus_9025#0      TTACTACTATGGAACCACAGCACGTTGTAGCTATCAAATCATTATGGGATGATCCGGGTA 120
consensus_9025#1      ------------------------------------------------------------
                                                                                  

consensus_9025#0      TTAAAGAATGCTATGATCGTCGTCGTGAATATCAACTAACAGATTCAGCAAAATACTATT 180
consensus_9025#1      ------------------------------------------------------------
                                                                                  

consensus_9025#0      TAGATAATCTTGACAGAATTTCACAAGCAGATTATTTACCGACGCTCCAAGATATTTTAC 240
consensus_9025#1      ------------------------------------------------------------
                                                                                  

consensus_9025#0      GAGTTCGAGTTCCTACTACAGGAATTGTAGAGTACTTGTTTGATTTGGATTCTATCATAT 300
consensus_9025#1      ------------------------------------------------------------
                                                                                  

consensus_9025#0      TTCGAATGGTTGATGTTGGTGGACAACGTTCTGAACGTCGAAAATGGATACATTGTTTTG 360
consensus_9025#1      -----------------------------TTTGTGTCTTCCAAACAAATTC-TTGCTT-- 28
                                                   * **    *   ***   ** * *** **  

consensus_9025#0      AAAGTGTCACTTCAATTATGTTTTTAGTTGCATTATCTGAGTATGATCAAGTATTGGTGG 420
consensus_9025#1      -AAATACG--TTCAGATGAGATATTAGA---ATGATTTCCGCATAATTTTGTATTGT--- 79
                       ** *     ****  *  * * ****    ** ** *  * ** **   ******    

consensus_9025#0      AATCCGATAATGAGAATCGTATGGAAGAAAGTAAAGCGCTCTTCAGAACAATCATTACTT 480
consensus_9025#1      -ATTTTATA----GAATCGTATGGAAGAAAGTAAAGCGCTCTTCAGAACAATCATTACTT 134
                       **   ***    ***********************************************

consensus_9025#0      ATCCATGGTTTCAAGAGTCATCTGTTATTTTATTCCTGAATAAGAAAGATCTTTTAGAAG 540
consensus_9025#1      ATCCATGGTTTCAAGAGTCATCTGTTATTTTATTCCTGAATAAGAAAGATCTTTTAGAAG 194
                      ************************************************************

consensus_9025#0      AGAAAGTTCTCTATTCTCATCTTGTTGATTATTTTCCTGAATATGATGGTCCTCAACGCG 600
consensus_9025#1      AGAAAGTTCTCTATTCTCATCTTGTTGATTATTTTCCTGAATATGATGG---TAAGTGTT 251
                      *************************************************   * *  *  

consensus_9025#0      ATGCAGAAGCTGCTCGTGATTTTATTTTGAAAATGTTTGTTGAATTAAATCCTGATCCTG 660
consensus_9025#1      ATGTT--------------TTCCTTGTTTAAAATGAAAGATTAATTACATTCTGTTT--- 294
                      ***                **   * ** ******   * * ***** ** *** *    

consensus_9025#0      AGAAAATAATCTATTCTCATTTCACATGCGCTACTGACACAGAGAATATACGTTTTGTTT 720
consensus_9025#1      -GGTATTTATCCATTTTTAACATAAATTGTCAATCCAAACTTGAAGTAACTATCTTCAAT 353
                       *  * * *** *** * *    * **   * *   * **    * **    * **   *

consensus_9025#0      TTGCTGCTGTAAAAGATACAATACTTCAGTTGAATTTAAAAGAATATAATCTTGTTTGAG 780
consensus_9025#1      GTACAAATAGGATGCTGATTGTTGACGTGTTCATTGTATGAAATTAT----TTCTGGGAA 409
                       * *   *   *     *   *      *** * * **  * * ***    ** *  ** 

consensus_9025#0      GAATTATGTCATAAAGTATGCATCATTT- 808
consensus_9025#1      AAAAAAGGTTATTAAATA-AAACGGTGGG 437
                       **  * ** ** ** **   *   *