These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9026#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1114 fasta sequence [CGGCACGAGGGCTTCAATAACCTTATGACTGAAATCATCCCAATTTTTTACGATAGAGTTAGATGGTAGTCATGAAGCTGGTCTGGGTGGGCAAATGAAAATTTTATCGGACTTATTATCTAAATTCGACAATAATCTGTCTAAACACTTTAAAAAAATAGAACTTGTCCCGGAACATTTTGCATTTCGATGGTTAAGTTTATTGTTGGCACGAGAATTCATGCTTCCAGATGTACTCCTATTATGGGATACACTTTTCTCAGATCCACACAGGTTCAACTTACTTCCATATGTTTGCTGTTCAATGTTAATTGGTATTCGTGATCAATTATTGAAAGCTGATTTTCCTACGGCTGTTCAGCTTGTCCAAAATTATCCATCAAATGTCGATGTAATGCATATTCTTTTGAAAGCCAGAGCATTCTATACAGATCGCCAGATTTGAAGCCTTATCTTTTCAACTGTTAGATTATTTTTTGTTATGACCACCTATTCTGAACAAGAAATAGAAATGTTAATGTGCTATATTTAAATGTGTGTACATGTGTATGCGCATATGTTCGTACTCACCTATCCACGAGTGTTCTTTTTTTTCTTCTCTTTCTCTCCTATTTACTAATCTCAAATATTTCTCCTTTATTTTGATTGAATATCAGTTACTTGGTGACTGATTACANNACATCGTTTTGATATCTTTGATGATT-AAATTACTGTTATTGTTATAATTTATTTCATATTAAATTTGTAATATGATCACTTTTATTTTGGTCTCTTTTTCCCCATCCATATTCTTTTTTAATAAAATGTTAATATTGTCTTATTCTAAATTGTTATTGCATCTTAATGGTAGTGCACCAATGATTTTCTCTTTTCCCTGATTATTAAATTTAAAATGGTTGTTTGAATATTACGATATATTGTTCAAGACAGTTACCTTTTTCTTTTTGAATTTTTACTTTCAGAATGATTATTTTTTTGTTGATTTGAAAACATTGAATTAAATCCTCATTTTGTAACACTATTGTTTAAATAGACATGTGTAATTTCAAAGAGAATGATTTATGTTGTATATTTATGAGAAGTGTTTGTTTGTTTTGTCAAATATTATTTGTAC] [+] EMBL CD083652 [CGGCACGAGGGCTTCAATAACCTTATGACTGAAATCATCCCAATTTTTTACGATAGAGTTAGATGGTAGTCATGAAGCTGGTCTGGGTGGGCAAATGAAAATTTTATCGGACTTATTATCTAAATTCGACAATAATCTGTCTAAACACTTTAAAAAAATAGAACTTGTCCCGGAACATTTTGCATTTCGATGGTTAAGTTTATTGTTGGCACGAGAATTCATGCTTCCAGATGTACTCCTATTATGGGATACACTTTTCTCAGATCCACACAGGTTCAACTTACTTCCATATGTTTGCTGTTCAATGTTAATTGGTATTCGTGATCAATTATTGAAAGCTGATTTTCCTACGGCTGTTCAGCTTGTCCAAAATTATCCATCAAATGTCGATGTAATGCATATTCTTTTGAAAGCCAGAGCATTCTATACAGATCGCCAGATTTGAAGCCTTATCTTTTCAACTGTTAGATTATTTTTTGTTATGACCACCTATTCTGAACAAGAAATAGAAATGTTAATGTGCTA ] [+] EMBL CD082918 [ TGAAGCTGGTCTGGGTGGGCAAATGAAAATTTTATCGGACTTATTATCTAAATTCGACAATAATCTGTCTAAACACTTTAAAAAAATAGAACTTGTTCCGGAACATTTTGCATTTCGATGGTTAAGTTTATTGTTGGCACGAGAATTCATGCTTCCAGATGTACTCCTATTATGGGATACACTTTTCTCAGATCCACACAGGTTCAACTTACTTCCATATGTTTGCTGTTCAATGTTAATTGGTATTCGTGATCAATTATTGAAAGCTGATTTTCCTACGGCTGTTCAGCTTGTCCAAAATTATCCATCAAATGTCGATGTAATGCATATTCTTTTGAAAGCCAGAGCATTCTATACAGATCGCCAGATTTGAAGCCTTATCTTTTCAACTGTTAGATTATTTTTTGTTATGACCACCTATTCTGAACAAGAAATAGAAATGTAAATGTGCTATATTTAAATGTGTGTACATGTGTATGCGCATATGTTCGTACTCACCTATCCACGAGTGTTCTTTTTTTTCTTCTCTTTCTCTCCTATTTACTAATCTCAAATATTTCTCCTTTATTTTGATTGAATATCAGTTACTTGGTGACTGATTACANNACATCGTTTTGATATCTTTGATGATT AAATTA ] [-] EMBL CD076501 [ GTACTCACCTATCCACGAGTGTTCTTTTTTTTCTTCTCTTTCTCTCCTATTTACTAATCTCAAATATTTCTCCTTTATTTTGATTGAATATCAGTTACTTGGTGACTGATTACAAAACATCGTTTTGATATCTTTGATGATTAAAATTACTGTTATTGTTATAATTTATTTCATATTAAATTTGTAATATGATCACTTTTATTTTGGTCTCTTTTTCCCCATCCATATTCTTTTTTAATAAAATGTTAATATTGTCTTATTCTAAATTGTTATTGCATCTTAATGGTAGTGCACCAATGATTTTCTCTTTTCCCTGATTATTAAATTTAAAATGGTTGTTTGAATATTACGATATATTGTTCAAGACAGTTACCTTTTTCTTTTTGAATTTTTACTTTCAGAATGATTATTTTTTTGTTGATTTGAAAACATTGAATTAAATCCTCATTTTGTAACACTATTGTTTAAATAGACATGTGTAATTTCAAAGAGAATGATTTATGTTGTATATTTATGAGAAGTGTTTGTTTGTTTTGTCAAATATTATTTGTAC] [-] EMBL SMW745 [ CTTTTTTAATAAAATGTTAATATTGTCTTATTCTAAATTGTTATTGCATCTTAATGGTAGTGCACCAATGATTTTCTCTTTTCCCTGATTATTAAATTTAAAATGGTTGTTTGAATATTACGATATATTGTTCAAGACAGTTACCTTTTTCTTTCTGAATTTTTACTTTCAGAATGATTATTTTTTTGTTGATTTGAAAACATTGAATTAAATCCTCATTTTGTAACACTATTGTTTAAATAGACATGTGTAAT ] consensusID : consensus_9026#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 626 fasta sequence [TCGATTCTTTTCGTCGTCCCACAGAGTATTCTTGTCTGTCATGATTTGGAAAGGAAGTACCTCTTGGGGTATTACGGAGAAGAGGGGAAACCTCTGCACTTCACTCCCGTTCATTGAGTAAAAATCTTGCTGCTCTTACAAATATGATTCATCTGTCTACTTACGCTCCTTACCAACCAAACCATCGGTTATCTTCCTGGTTTAGTAACCCAATCACAAACAAGTAAGATGATCCGTAATAGCGATTGGAATTCGACCTCACCGCATGAGGAACCTCACTGGGAAGTGATTGAAAGAATTCTATATGTATATTACAAAACTCATGTGTCTCAGGGTTATGTTCAAGGAATGAATGAAATTATTGCACCGATATACTATGTTTTCGCCACTGACCCCGATGAATCCTGGAGAAAATATGCAGAAATGGATACATTTTATTGCTTCAATAACCTTATGACTGAAATTCATCCCAATTTTTTACGAAAGTTAGATGGTAGTCATGAAGCTGGTCTGGGTGGGCAAATGAAAATATTATCGGACTTATTATCTAAATTCGACAATAATCTGTCTAAACACTTTAAAAAAATAGAACTTGTTCCGGAACATTTTGCCCTTCCATGGTTAAG] [-] EMBL BG930970 [TCGATTCTTTTCGTCGTCCCACAGAGTATTCTTGTCTGTCATGATTTGGAAAGGAAGTACCTCTTGGGGTATTACGGAGAAGAGGGGAAACCTCTGCACTTCACTCCCGTTCATTGAGTAAAAATCTTGCTGCTCTTACAAATATGATTCATCTGTCTACTTACGCTCCTTACCAACCAAACCATCGGTTATCTTCCTGGTTTAGTAACCCAATCACAAACAAGTAAGATGATCCGTAA ] [+] EMBL CD178247 [ tGTCCCACAAAGTATTCTTGCCTGTCATTATTTGGAAAGGAAGTACCTGTTGGGGTATTACGGAGAAGAGGGGAAACCTCTGCACTTCAGTCCCGTTCATTGAATAAAAATCTTGCTGGTGTTACAAATATGATTCATCTGTCTACTTACGCTCCTTACCAACCAAACCATCGGTTATCTT CTGGTTTAGTAACGCAATCACAAATAAGTAAGATGAACCGTAATAGCGATTGGAATTCGACCTCACCGCATGAGGAACCTCACTGGGAAGTGATTGAAAGAATTCTATATGTATATTACAAAACTCATGTGTCTCAGGGTTATGTTCAAGGAATGAATGAAATTATTGCACCGATATACTATGTTTTCGCCACTGACCCCGATGAATCCTGGAGAAAATATGCAGAAATGGATACATTTTATTGCTTCAATAACCTTATGACTGAAATTCATCCCAATTTTTTACGAAAGTTAGATGGTAGTCATGAAGCTGGTCTGGGTGGGCAAATGAAAATATTATCGGACTTATTATCTAAATTCGACAATAATCTGTCTAAACA ] [-] EMBL CD118278 [ TTGGAATTCGACCTCACCGCATGAGGAACCTCACTGGGAAGTGATTGAAAGAATTCTATATGTATATTACAAAACTCATGTGTCTCAGGGTTATGTTCAAGGAATGAATGAAATTATTGCACCGATATACTATGTTTTCGCCACTGACCCCGATGAATCCTGGAGAAAATATGCAGAAATGGATACATTTTATTGCTTCAATAACCTTATGACTGAAATTCATCCCAATTTTTTACGAAAGTTAGATGGTAGTCATGAAG ] [-] EMBL CD062690 [ GCAGAAATGGAGACATTTTATTGCTTCAATACCCTTATGACTGAAATTCATCCCAATTTTTTTTAACAGTTAGATGGTAGTCATGAAGCTGGTCTGGGTGGGCAAATGAAAATTTTATCGGACTTATTATCTAAATTCGACAATAATCTGTTTAAACACTTTAAAAAAATAGAACTTGTTCCGGAACATTTTGCCCTTCCATGGTTAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9026#0 CGGCACGAGGGCTTCAATAACCTTATGACTGAAATCATCCCAATTTTTTACGATAGAGTT 60 consensus_9026#1 ------------------------------------------------------------ consensus_9026#0 AGATGGTAGTCATGAAGCTGGTCTGGGTGGGCAAATGAAAATTTTATCGGACTTATTATC 120 consensus_9026#1 ------------------------------------------------------------ consensus_9026#0 TAAATTCGACAATAATCTGTCTAAACACTTTAAAAAAATAGAACTTGTCCCGGAACATTT 180 consensus_9026#1 ------------------------------------------------------------ consensus_9026#0 TGCATTTCGATGGTTAAGTTTATTGTTGGCACGAGAATTCATGCTTCCAGATGTACTCCT 240 consensus_9026#1 ------TCGATTCTT---TTCGTCGTCCCACAGAGTATTCTTGTCT---GTCATGATTTG 48 ***** ** ** * ** *** **** ** * * * * consensus_9026#0 ATTATGGGATACACTTTTCTCAGATCCACACAGGTTCAACTTA-CTTCCATATGTTTGCT 299 consensus_9026#1 G--AAAGGAAGTACCTCTTGGGGTATTACGGAGAAGAGGGGAAACCTCTGCAC-TTCACT 105 * *** ** * * * ** ** * * ** * ** ** consensus_9026#0 GTTCAATGTTAATTGGTATTCGTGATCAATTATTGAAAGCTGATTTTCCTACGGCTGTTC 359 consensus_9026#1 CCCGTTCATTGAGTAAAAATCTTG-CTGCTCTTACAAATATGATTCATCTGTCTACTTAC 164 ** * * * ** ** * * *** ***** ** * * consensus_9026#0 AGCTTGTCCAAAATTATCCATCAAATGTCGATGTAATGCA-TATTCTTTTGAAAGCCAGA 418 consensus_9026#1 GCTCCTTACCAACCAAACCATCGGTTATCTTCCTGGTTTAGTAACCCAATCACAAACAAG 224 * * ** * ***** * ** * * * ** * * * * ** consensus_9026#0 GCATTCTATACAGATCGCCAGATTTGAAGCCTTATCTTTTCAACTGTTAGATTATTTTTT 478 consensus_9026#1 TAAGATGATCCGTAATAGCGA--TTGGAATTCGACCTCACCGCATGAGGAACCTCACTGG 282 * ** * * * *** * * ** * ** * * consensus_9026#0 GTTATGACC--ACCTATTCTGAACAAGAAATAGAAATGTTAATGTGCTATATTTAAATGT 536 consensus_9026#1 GAAGTGATTGAAAGAATTCTATATGTATATTACAAA-ACTCATGTGTC----TCAGGGTT 337 * *** * ***** * * ** *** * ***** * * * consensus_9026#0 GTGTACATGTGTATGCGCATATGTTCGTACTCACCTATCCACGAGTGTTCTTTTTTTTCT 596 consensus_9026#1 ATGTTCAAG---GAATGAATGAAATTAT-TGCACCGATATACTA-TGTTTTCGCCACTGA 392 *** ** * * ** * * **** ** ** * **** * * consensus_9026#0 TCTCTTTCTCTCCTATTTACTAATCTCAAATATTTCTCCTTTATTTTGATTGAATATCAG 656 consensus_9026#1 CCCCGATGAATCCTGGAGAAAATATGCAGAAATGGATACATTTTATTGCTTCAATA---- 448 * * * **** * * ** * ** * * ** * *** ** **** consensus_9026#0 TTACTTGGTGACTGATTACANNACATCGTTTTGATATCTTTGATGATTAAATTACTGTTA 716 consensus_9026#1 --ACCTTATGACTGA----AATTCATC--CCAATTTTTTACGAAAGTTAGATGGTAGTCA 500 ** * ******* * **** * * * ** *** ** ** * consensus_9026#0 TTGTTATAATTTATTTCATATTAAATTTGTAATATGATCACTTTTATTTTGGTCTCTTTT 776 consensus_9026#1 TGAAGCTGGTCTGG---GTGGGCAAATGAAAATATTATCGGACTTATT---ATCTAAATT 554 * * * * * ** * ***** *** ***** *** ** consensus_9026#0 TCCCCATCCATATTCTTTTTTAATAAAATGTTAATATTGT-CTTATTCTAAATTGTTATT 835 consensus_9026#1 ----CGACAATAATCTGTCTAAACACTTTAAAAAAATAGAACTTGTTCCGGAACATT-TT 609 * * *** *** * * ** * * ** ** * *** *** * ** ** consensus_9026#0 GCATCTTAATGGTAGTGCACCAATGATTTTCTCTTTTCCCTGATTATTAAATTTAAAATG 895 consensus_9026#1 GCCCTTCCATGGTTAAG------------------------------------------- 626 ** * ***** * consensus_9026#0 GTTGTTTGAATATTACGATATATTGTTCAAGACAGTTACCTTTTTCTTTTTGAATTTTTA 955 consensus_9026#1 ------------------------------------------------------------ consensus_9026#0 CTTTCAGAATGATTATTTTTTTGTTGATTTGAAAACATTGAATTAAATCCTCATTTTGTA 1015 consensus_9026#1 ------------------------------------------------------------ consensus_9026#0 ACACTATTGTTTAAATAGACATGTGTAATTTCAAAGAGAATGATTTATGTTGTATATTTA 1075 consensus_9026#1 ------------------------------------------------------------ consensus_9026#0 TGAGAAGTGTTTGTTTGTTTTGTCAAATATTATTTGTAC 1114 consensus_9026#1 --------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||